Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18540

Experiment: m.b. Choline Lysine 3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Choline Lysine 3 mM
1,930,334	+				-0.9
1,930,334	+				-0.1
1,930,342	-				-1.3
1,930,362	+		PGA1_c18510	0.15	-0.9
1,930,386	+		PGA1_c18510	0.20	-0.4
1,930,488	-		PGA1_c18510	0.45	-1.3
1,930,508	+		PGA1_c18510	0.50	-0.7
1,930,535	+		PGA1_c18510	0.56	-1.7
1,930,567	+		PGA1_c18510	0.64	+0.1
1,930,567	+		PGA1_c18510	0.64	-0.2
1,930,575	-		PGA1_c18510	0.66	+0.8
1,930,582	+		PGA1_c18510	0.67	+0.9
1,930,652	+		PGA1_c18510	0.84	+0.3
1,930,658	+		PGA1_c18510	0.86	+1.2
1,930,663	+		PGA1_c18510	0.87	-0.9
1,930,674	-		PGA1_c18510	0.89	+0.8
1,930,686	+				+0.0
1,930,686	+				-1.7
1,930,686	+				+0.8
1,930,686	+				-1.7
1,930,694	-				-0.7
1,930,701	+				-0.4
1,930,718	-				-0.2
1,930,724	+				+1.2
1,930,732	-				+0.5
1,930,738	-				-1.4
1,930,828	+		PGA1_c18520	0.39	+0.9
1,930,844	-		PGA1_c18520	0.45	+0.6
1,930,860	+		PGA1_c18520	0.51	-0.1
1,930,860	+		PGA1_c18520	0.51	+0.4
1,930,902	+		PGA1_c18520	0.67	-1.4
1,930,910	-		PGA1_c18520	0.70	-0.2
1,930,911	+		PGA1_c18520	0.70	-1.6
1,930,920	-		PGA1_c18520	0.74	+0.3
1,930,941	-		PGA1_c18520	0.82	+0.6
1,930,962	-				+1.9
1,930,996	+				+0.3
1,930,996	-				-0.7
1,931,036	-		PGA1_c18530	0.14	+0.7
1,931,056	+		PGA1_c18530	0.20	-0.5
1,931,064	-		PGA1_c18530	0.23	+0.5
1,931,148	+		PGA1_c18530	0.50	-0.5
1,931,158	+		PGA1_c18530	0.53	+1.1
1,931,188	+		PGA1_c18530	0.63	+0.9
1,931,200	-		PGA1_c18530	0.67	-1.3
1,931,232	-		PGA1_c18530	0.77	-0.1
1,931,311	+				-0.2
1,931,319	-				+1.4
1,931,319	-				+0.4
1,931,378	+				+1.4
1,931,383	+				-1.1
1,931,409	-		PGA1_c18540	0.11	+2.5
1,931,415	+		PGA1_c18540	0.12	+0.3
1,931,415	-		PGA1_c18540	0.12	+0.9
1,931,433	+		PGA1_c18540	0.14	-0.2
1,931,441	-		PGA1_c18540	0.15	-0.5
1,931,441	-		PGA1_c18540	0.15	-1.8
1,931,470	-		PGA1_c18540	0.18	+1.1
1,931,498	-		PGA1_c18540	0.21	-1.1
1,931,519	+		PGA1_c18540	0.23	+0.5
1,931,537	-		PGA1_c18540	0.25	+1.2
1,931,557	+		PGA1_c18540	0.27	+0.4
1,931,557	+		PGA1_c18540	0.27	+0.3
1,931,565	-		PGA1_c18540	0.28	+0.5
1,931,568	+		PGA1_c18540	0.28	+0.1
1,931,612	-		PGA1_c18540	0.33	-2.9
1,931,612	-		PGA1_c18540	0.33	-0.4
1,931,636	+		PGA1_c18540	0.35	-0.5
1,931,665	+		PGA1_c18540	0.38	-1.4
1,931,665	+		PGA1_c18540	0.38	+0.7
1,931,665	+		PGA1_c18540	0.38	+0.3
1,931,670	+		PGA1_c18540	0.39	+0.3
1,931,723	-		PGA1_c18540	0.45	+1.4
1,931,770	-		PGA1_c18540	0.49	+0.3
1,931,800	-		PGA1_c18540	0.53	-1.3
1,931,843	+		PGA1_c18540	0.57	+1.9
1,931,851	-		PGA1_c18540	0.58	+0.7
1,931,949	+		PGA1_c18540	0.68	-0.4
1,931,957	-		PGA1_c18540	0.69	-0.3
1,931,982	-		PGA1_c18540	0.72	+0.5
1,931,991	+		PGA1_c18540	0.73	+0.1
1,931,996	+		PGA1_c18540	0.73	+0.1
1,931,996	+		PGA1_c18540	0.73	+0.9
1,932,007	+		PGA1_c18540	0.74	+0.2
1,932,007	+		PGA1_c18540	0.74	-1.7
1,932,007	+		PGA1_c18540	0.74	-0.4
1,932,007	+		PGA1_c18540	0.74	-1.4
1,932,008	+		PGA1_c18540	0.75	-0.7
1,932,015	-		PGA1_c18540	0.75	+0.9
1,932,015	-		PGA1_c18540	0.75	-0.6
1,932,015	-		PGA1_c18540	0.75	+1.3
1,932,015	-		PGA1_c18540	0.75	-0.1
1,932,017	+		PGA1_c18540	0.76	+1.2
1,932,032	+		PGA1_c18540	0.77	+1.3
1,932,040	-		PGA1_c18540	0.78	-2.8
1,932,077	+		PGA1_c18540	0.82	+1.8
1,932,077	-		PGA1_c18540	0.82	+1.3
1,932,078	+		PGA1_c18540	0.82	-1.1
1,932,079	+		PGA1_c18540	0.82	+0.9
1,932,123	-		PGA1_c18540	0.87	-0.1
1,932,123	-		PGA1_c18540	0.87	-0.3
1,932,182	-				+0.1
1,932,182	-				-1.0
1,932,182	-				+1.9
1,932,193	+				-0.4
1,932,217	+				-1.0
1,932,225	-				+0.5
1,932,225	-				-0.7
1,932,252	-				+1.5
1,932,256	+				-0.2
1,932,353	-		PGA1_c18550	0.18	+0.1
1,932,353	-		PGA1_c18550	0.18	-1.8
1,932,400	-		PGA1_c18550	0.26	-0.7
1,932,402	-		PGA1_c18550	0.26	-1.0
1,932,503	+		PGA1_c18550	0.43	+0.2
1,932,508	+		PGA1_c18550	0.44	-0.7
1,932,516	-		PGA1_c18550	0.45	-2.5
1,932,516	-		PGA1_c18550	0.45	+0.7
1,932,516	-		PGA1_c18550	0.45	+0.9
1,932,541	-		PGA1_c18550	0.49	+0.9
1,932,592	+		PGA1_c18550	0.58	-0.5
1,932,600	-		PGA1_c18550	0.59	+0.2
1,932,618	+		PGA1_c18550	0.62	+1.4
1,932,619	-		PGA1_c18550	0.62	+1.1
1,932,626	-		PGA1_c18550	0.63	-0.9
1,932,735	-		PGA1_c18550	0.81	-0.7
1,932,743	-		PGA1_c18550	0.83	-0.1
1,932,752	-		PGA1_c18550	0.84	+0.4
1,932,776	-		PGA1_c18550	0.88	+0.7
1,932,814	+				+0.7
1,932,900	+		PGA1_c18560	0.40	-0.2
1,932,929	-		PGA1_c18560	0.56	-0.5
1,932,986	-		PGA1_c18560	0.89	+0.6
1,933,099	+		PGA1_c18570	0.30	+1.3
1,933,109	+		PGA1_c18570	0.33	+0.3
1,933,142	-		PGA1_c18570	0.44	-0.1
1,933,196	-		PGA1_c18570	0.60	+1.1
1,933,233	-		PGA1_c18570	0.72	-0.9
1,933,247	+		PGA1_c18570	0.76	+0.9
1,933,247	+		PGA1_c18570	0.76	-0.3
1,933,247	+		PGA1_c18570	0.76	-0.7