Strain Fitness in Shewanella oneidensis MR-1 around SO2551

Experiment: Minimal 20C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal 20C
2,682,431	+				+0.9
2,682,431	+				-0.9
2,682,439	-				-0.0
2,682,539	+				-0.2
2,682,547	-				+1.4
2,682,566	+				+0.6
2,682,638	-		SO2550	0.11	-0.2
2,682,639	-		SO2550	0.11	-0.2
2,682,659	+		SO2550	0.14	+0.3
2,682,703	-		SO2550	0.20	-0.4
2,682,709	+		SO2550	0.21	-1.4
2,682,757	+		SO2550	0.28	+0.7
2,682,814	+		SO2550	0.36	+0.5
2,682,846	-		SO2550	0.41	+0.4
2,682,886	-		SO2550	0.46	-0.3
2,682,890	+		SO2550	0.47	-0.5
2,682,944	-		SO2550	0.55	-0.4
2,683,008	+		SO2550	0.64	+0.8
2,683,024	+		SO2550	0.66	+0.4
2,683,052	-		SO2550	0.70	+0.0
2,683,130	-		SO2550	0.82	+0.2
2,683,136	+		SO2550	0.83	-1.0
2,683,271	+				+0.3
2,683,309	+				+0.1
2,683,309	+				-0.1
2,683,317	-				-0.4
2,683,319	+				+0.3
2,683,327	-				-0.8
2,683,344	+				-0.8
2,683,407	+				+0.7
2,683,528	+		SO2551	0.19	+0.5
2,683,600	+		SO2551	0.28	-0.6
2,683,719	+		SO2551	0.44	-0.1
2,683,786	+		SO2551	0.53	+0.6
2,683,840	-		SO2551	0.60	-1.0
2,683,863	+		SO2551	0.63	+0.3
2,683,863	+		SO2551	0.63	-0.3
2,683,866	-		SO2551	0.63	+0.1
2,683,894	+		SO2551	0.67	-0.1
2,683,902	-		SO2551	0.68	+0.9
2,683,957	+		SO2551	0.75	+0.1
2,684,066	+		SO2551	0.89	-0.6
2,684,114	-				+0.0
2,684,178	-				-0.3
2,684,178	-				+0.8
2,684,182	-				+0.4
2,684,182	-				+0.5
2,684,182	-				-0.5
2,684,182	-				+0.1
2,684,182	-				-1.0
2,684,184	+				+0.5
2,684,184	+				+0.2
2,684,184	+				-0.8
2,684,184	+				-0.9
2,684,184	+				+0.1
2,684,184	+				+0.8
2,684,184	+				+0.8
2,684,184	+				-0.7
2,684,184	+				-0.3
2,684,184	+				-0.3
2,684,184	+				+0.2
2,684,184	+				+0.1
2,684,184	+				+0.1
2,684,184	+				-0.1
2,684,184	+				-0.8
2,684,184	+				-0.4
2,684,184	+				-0.3
2,684,192	-				+0.4
2,684,192	-				+0.4
2,684,192	-				+0.4
2,684,192	-				-0.4
2,684,192	-				-0.3
2,684,192	-				+0.1
2,684,192	-				-0.6
2,684,192	-				-0.0
2,684,192	-				-0.3
2,684,192	-				+0.1
2,684,192	-				+0.5
2,684,192	-				+0.6
2,684,192	-				+0.1
2,684,199	-				+1.0
2,684,199	-				-0.1
2,684,200	-				+1.1
2,684,215	-				+0.2
2,684,225	+				+0.3
2,684,225	+				-0.1
2,684,239	+				+0.5
2,684,241	+				+0.4
2,684,241	+				-1.0
2,684,241	+				-0.2
2,684,241	+				-0.2
2,684,241	+				-0.6
2,684,241	+				+0.4
2,684,241	+				+0.3
2,684,241	+				-0.3
2,684,241	+				-0.6
2,684,241	+				-0.9
2,684,244	-				+0.3
2,684,247	+				-0.6
2,684,249	-				-0.2
2,684,249	-				-0.1
2,684,249	-				+0.6
2,684,249	-				+0.9
2,684,249	-				-0.0
2,684,249	-				+1.4
2,684,249	-				+0.0
2,684,249	-				+0.2
2,684,249	-				+0.1
2,684,251	+				-0.6
2,684,251	+				-0.4
2,684,251	+				-0.4
2,684,251	+				-0.2
2,684,251	+				+0.2
2,684,251	+				-0.1
2,684,259	-				+0.1
2,684,259	-				-0.1
2,684,259	-				+0.3
2,684,259	-				-0.1
2,684,259	-				+0.2
2,684,259	-				+1.0
2,684,259	-				-0.4
2,684,259	-				-0.2
2,684,259	-				+0.4
2,684,259	-				-0.2
2,684,265	+				-0.2
2,684,265	+				+0.2
2,684,266	+				-0.2
2,684,271	+				-0.2
2,684,272	-				+0.6
2,684,274	-				-0.2
2,684,274	-				+1.1
2,684,274	-				+0.4
2,684,303	+				-0.3
2,684,304	+				-0.4
2,684,304	+				+0.8
2,684,312	-				-0.4
2,684,312	-				-0.9
2,684,325	+				-0.2
2,684,333	-				+0.9
2,684,366	+				+0.1
2,684,371	-				-0.2
2,684,374	-				+1.5
2,684,432	+				-0.3
2,684,433	+				-0.4
2,684,433	+				+0.7
2,684,441	-				-0.2
2,684,441	-				+0.3
2,684,448	+				-0.1
2,684,463	-				+0.2
2,684,469	+				+0.0
2,684,469	+				+0.5
2,684,469	+				-0.8
2,684,469	+				-1.1
2,684,469	+				+0.7
2,684,469	+				-0.1
2,684,469	+				-1.0
2,684,469	+				-1.1
2,684,472	-				-0.5
2,684,477	-				-0.5
2,684,477	-				-1.6
2,684,477	-				-0.3
2,684,489	+				-0.4
2,684,506	+				-0.6
2,684,506	+				-2.1
2,684,506	+				+1.4
2,684,506	+				-0.4
2,684,506	+				-0.2
2,684,506	+				+0.1
2,684,506	+				-0.4
2,684,506	+				-0.3
2,684,506	+				+2.4
2,684,506	+				-2.3
2,684,506	+				+0.3
2,684,506	+				-0.1
2,684,506	+				+0.3
2,684,506	+				-0.3
2,684,506	+				+0.3
2,684,511	+				-0.6
2,684,514	-				+0.6
2,684,514	-				-0.2
2,684,514	-				+0.4
2,684,514	-				-0.2
2,684,514	-				-0.7
2,684,514	-				+0.6
2,684,514	-				-0.4
2,684,514	-				-0.2
2,684,514	-				-0.3
2,684,514	-				+0.3
2,684,514	-				+0.6
2,684,514	-				+0.2
2,684,514	-				-0.3
2,684,519	-				+0.6
2,684,519	-				-0.5
2,684,566	+				-1.0
2,684,574	-				+0.4
2,684,605	-		SO2552	0.18	-0.1
2,684,621	-		SO2552	0.22	-0.3
2,684,633	+		SO2552	0.25	+1.0
2,684,633	+		SO2552	0.25	+1.4
2,684,633	+		SO2552	0.25	+0.5
2,684,635	+		SO2552	0.26	-0.2
2,684,636	+		SO2552	0.26	+0.3
2,684,640	-		SO2552	0.27	+0.1
2,684,640	-		SO2552	0.27	+1.2
2,684,641	-		SO2552	0.28	+0.2
2,684,641	-		SO2552	0.28	-0.2
2,684,641	-		SO2552	0.28	-0.1
2,684,646	+		SO2552	0.29	-0.0
2,684,646	+		SO2552	0.29	-0.6
2,684,648	+		SO2552	0.29	-0.0
2,684,648	+		SO2552	0.29	+0.4
2,684,654	-		SO2552	0.31	-0.5
2,684,654	-		SO2552	0.31	-0.6
2,684,654	-		SO2552	0.31	-0.2
2,684,656	+		SO2552	0.31	+0.5
2,684,713	+		SO2552	0.47	-0.0
2,684,713	+		SO2552	0.47	+0.4
2,684,732	-		SO2552	0.52	+0.8
2,684,739	+		SO2552	0.53	-0.6
2,684,744	+		SO2552	0.55	+0.5
2,684,744	+		SO2552	0.55	+0.2
2,684,744	+		SO2552	0.55	-0.2
2,684,744	+		SO2552	0.55	+0.4
2,684,744	+		SO2552	0.55	-1.6
2,684,744	+		SO2552	0.55	+0.1
2,684,752	-		SO2552	0.57	-1.2
2,684,752	-		SO2552	0.57	-0.3
2,684,752	-		SO2552	0.57	-0.6
2,684,752	-		SO2552	0.57	+0.7
2,684,767	-		SO2552	0.61	-0.2
2,684,795	-		SO2552	0.68	-0.0
2,684,797	+		SO2552	0.69	+0.0
2,684,821	-		SO2552	0.75	-0.3
2,684,826	+		SO2552	0.76	+0.2
2,684,826	+		SO2552	0.76	+0.6
2,684,826	+		SO2552	0.76	+0.3
2,684,859	+		SO2552	0.85	-0.3
2,684,867	-		SO2552	0.87	-0.9
2,684,908	+				+0.1
2,684,908	+				+0.2
2,684,910	+				+0.1
2,684,924	-				+1.4
2,684,949	+				-0.5
2,684,949	+				-0.3
2,684,957	-				+0.5
2,684,957	-				+0.0
2,684,957	-				-0.4
2,684,957	-				+0.0
2,684,957	-				+1.4
2,684,973	+				-0.5
2,684,976	-				+0.2
2,684,976	-				+0.2
2,684,981	-				+0.9
2,685,064	+				-0.5
2,685,072	-				-0.2
2,685,075	-				+0.5
2,685,086	+				-1.0
2,685,116	+		SO2553	0.13	-2.6