Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15815

Experiment: planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,479,485	+				-1.7
3,479,486	-				-1.2
3,479,523	+				-0.1
3,479,575	+				+3.4
3,479,575	+				+3.4
3,479,575	+				-0.2
3,479,575	+				-0.4
3,479,576	-				+1.0
3,479,576	-				-1.7
3,479,587	+				-0.1
3,479,587	+				+0.2
3,479,588	-				+0.9
3,479,588	-				-0.5
3,479,588	-				-1.5
3,479,588	-				-0.3
3,479,588	-				-0.7
3,479,647	+		LRK54_RS15805	0.20	+0.7
3,479,647	+		LRK54_RS15805	0.20	-0.1
3,479,647	+		LRK54_RS15805	0.20	+0.1
3,479,647	+		LRK54_RS15805	0.20	-0.7
3,479,648	-		LRK54_RS15805	0.21	-1.1
3,479,648	-		LRK54_RS15805	0.21	+0.5
3,479,648	-		LRK54_RS15805	0.21	-1.9
3,479,686	-		LRK54_RS15805	0.35	+1.8
3,479,703	+		LRK54_RS15805	0.41	+0.3
3,479,704	-		LRK54_RS15805	0.42	+1.4
3,479,704	-		LRK54_RS15805	0.42	-2.4
3,479,768	+		LRK54_RS15805	0.66	-0.5
3,479,768	+		LRK54_RS15805	0.66	+0.1
3,479,768	+		LRK54_RS15805	0.66	-1.2
3,479,768	+		LRK54_RS15805	0.66	+0.3
3,479,768	+		LRK54_RS15805	0.66	-2.0
3,479,768	+		LRK54_RS15805	0.66	-0.3
3,479,768	+		LRK54_RS15805	0.66	+0.4
3,479,768	+		LRK54_RS15805	0.66	+1.7
3,479,768	+		LRK54_RS15805	0.66	-0.1
3,479,768	+		LRK54_RS15805	0.66	-3.2
3,479,768	+		LRK54_RS15805	0.66	-2.3
3,479,768	+		LRK54_RS15805	0.66	-0.5
3,479,768	+		LRK54_RS15805	0.66	-2.4
3,479,768	+		LRK54_RS15805	0.66	+0.0
3,479,768	+		LRK54_RS15805	0.66	+0.8
3,479,769	-		LRK54_RS15805	0.66	-1.8
3,479,769	-		LRK54_RS15805	0.66	-1.2
3,479,769	-		LRK54_RS15805	0.66	-0.3
3,479,769	-		LRK54_RS15805	0.66	-0.9
3,479,769	-		LRK54_RS15805	0.66	-1.8
3,479,769	-		LRK54_RS15805	0.66	+0.1
3,479,769	-		LRK54_RS15805	0.66	-1.3
3,479,769	-		LRK54_RS15805	0.66	-2.8
3,479,769	-		LRK54_RS15805	0.66	+0.1
3,479,769	-		LRK54_RS15805	0.66	+0.2
3,479,769	-		LRK54_RS15805	0.66	-0.5
3,479,769	-		LRK54_RS15805	0.66	-0.4
3,479,769	-		LRK54_RS15805	0.66	-0.0
3,479,795	+		LRK54_RS15805	0.76	-1.1
3,479,795	+		LRK54_RS15805	0.76	-0.5
3,479,795	+		LRK54_RS15805	0.76	+0.4
3,479,795	+		LRK54_RS15805	0.76	-1.0
3,479,795	+		LRK54_RS15805	0.76	+2.4
3,479,795	+		LRK54_RS15805	0.76	+1.4
3,479,795	+		LRK54_RS15805	0.76	+0.0
3,479,796	-		LRK54_RS15805	0.76	-1.0
3,479,796	-		LRK54_RS15805	0.76	+0.2
3,479,796	-		LRK54_RS15805	0.76	+1.1
3,479,796	-		LRK54_RS15805	0.76	+0.6
3,479,796	-		LRK54_RS15805	0.76	+1.6
3,479,796	-		LRK54_RS15805	0.76	+3.4
3,479,796	-		LRK54_RS15805	0.76	-2.3
3,479,796	-		LRK54_RS15805	0.76	-0.3
3,479,836	+				-0.7
3,479,836	+				+0.6
3,479,836	+				+1.3
3,479,836	+				-0.8
3,479,836	+				+0.5
3,479,837	-				-0.7
3,479,837	-				-0.4
3,479,837	-				-0.8
3,479,837	-				+0.4
3,479,837	-				-0.6
3,479,837	-				+0.1
3,479,837	-				-0.2
3,479,837	-				-1.4
3,479,837	-				-1.5
3,479,839	+				+1.3
3,479,839	+				-0.6
3,479,839	+				-1.5
3,479,839	+				-1.1
3,479,839	+				-2.0
3,479,839	+				+3.4
3,479,839	+				-1.0
3,479,840	-				-1.1
3,479,840	-				-1.1
3,479,840	-				-0.8
3,479,840	-				-0.5
3,479,947	+				-0.4
3,479,947	+				-0.7
3,479,947	+				+0.8
3,479,947	+				-0.2
3,479,947	+				+0.5
3,479,947	+				+0.1
3,479,947	+				-1.7
3,479,947	+				+1.1
3,479,947	+				-0.8
3,479,947	+				-0.0
3,479,947	+				-1.7
3,479,947	+				-1.0
3,479,947	+				-0.3
3,479,947	+				-0.7
3,479,947	+				-4.0
3,479,948	-				-2.1
3,479,948	-				+0.3
3,479,948	-				+1.4
3,479,948	-				-1.4
3,479,948	-				-0.3
3,479,948	-				+0.2
3,479,948	-				-0.9
3,479,948	-				+0.1
3,479,948	-				+0.9
3,479,948	-				-1.4
3,479,948	-				-0.7
3,479,948	-				-0.7
3,479,948	-				+2.1
3,479,948	-				+0.4
3,479,948	-				-0.2
3,479,948	-				+0.7
3,479,948	-				-1.3
3,479,948	-				-0.6
3,479,948	-				-0.5
3,479,948	-				+0.2
3,479,948	-				+1.2
3,479,948	-				-0.0
3,479,948	-				+0.2
3,479,948	-				-0.1
3,480,016	+		LRK54_RS15810	0.23	+0.9
3,480,016	+		LRK54_RS15810	0.23	-3.6
3,480,016	+		LRK54_RS15810	0.23	-0.9
3,480,016	+		LRK54_RS15810	0.23	-0.3
3,480,017	-		LRK54_RS15810	0.23	-0.1
3,480,017	-		LRK54_RS15810	0.23	-0.5
3,480,017	-		LRK54_RS15810	0.23	-0.2
3,480,017	-		LRK54_RS15810	0.23	-1.2
3,480,030	+		LRK54_RS15810	0.27	+0.1
3,480,245	+				-0.3
3,480,265	+				-0.5
3,480,265	+				-0.3
3,480,298	+				+2.0
3,480,299	-				+1.1
3,480,310	+				-1.3
3,480,311	-				-0.9
3,480,320	+				-0.1
3,480,320	+				+0.7
3,480,321	-				+0.2
3,480,328	-				-0.1
3,480,328	-				-0.2
3,480,383	+				+0.2
3,480,383	+				-0.3
3,480,384	-				-0.6
3,480,384	-				-1.1
3,480,474	+		LRK54_RS15815	0.11	+0.5
3,480,474	+		LRK54_RS15815	0.11	-0.6
3,480,475	-		LRK54_RS15815	0.11	+1.1
3,480,475	-		LRK54_RS15815	0.11	-2.2
3,480,475	-		LRK54_RS15815	0.11	+0.3
3,480,483	+		LRK54_RS15815	0.11	-0.2
3,480,484	-		LRK54_RS15815	0.11	-0.1
3,480,484	-		LRK54_RS15815	0.11	-1.2
3,480,484	-		LRK54_RS15815	0.11	-2.5
3,480,484	-		LRK54_RS15815	0.11	-1.1
3,480,507	+		LRK54_RS15815	0.13	-0.4
3,480,507	+		LRK54_RS15815	0.13	+1.1
3,480,507	+		LRK54_RS15815	0.13	-0.6
3,480,507	+		LRK54_RS15815	0.13	-1.6
3,480,508	-		LRK54_RS15815	0.13	+3.0
3,480,508	-		LRK54_RS15815	0.13	-1.3
3,480,508	-		LRK54_RS15815	0.13	+0.4
3,480,519	+		LRK54_RS15815	0.13	-1.6
3,480,520	-		LRK54_RS15815	0.14	-0.1
3,480,631	-		LRK54_RS15815	0.20	-0.6
3,480,665	-		LRK54_RS15815	0.22	-1.3
3,480,677	+		LRK54_RS15815	0.22	-1.3
3,480,677	+		LRK54_RS15815	0.22	-0.1
3,480,677	+		LRK54_RS15815	0.22	-0.7
3,480,678	-		LRK54_RS15815	0.22	-1.6
3,480,678	-		LRK54_RS15815	0.22	+0.2
3,480,732	+		LRK54_RS15815	0.25	-0.2
3,480,733	-		LRK54_RS15815	0.25	-0.4
3,480,768	+		LRK54_RS15815	0.27	-0.6
3,480,768	+		LRK54_RS15815	0.27	+0.7
3,480,769	-		LRK54_RS15815	0.27	+0.2
3,480,769	-		LRK54_RS15815	0.27	+0.4
3,480,769	-		LRK54_RS15815	0.27	+0.2
3,480,769	-		LRK54_RS15815	0.27	-1.1
3,480,849	+		LRK54_RS15815	0.32	+0.1
3,480,849	+		LRK54_RS15815	0.32	-0.4
3,480,849	+		LRK54_RS15815	0.32	-0.1
3,480,850	-		LRK54_RS15815	0.32	-0.0
3,480,850	-		LRK54_RS15815	0.32	-0.8
3,480,898	+		LRK54_RS15815	0.35	-2.1
3,480,898	+		LRK54_RS15815	0.35	-0.9
3,480,899	-		LRK54_RS15815	0.35	-1.3
3,480,899	-		LRK54_RS15815	0.35	+0.6
3,480,899	-		LRK54_RS15815	0.35	-0.6
3,480,899	-		LRK54_RS15815	0.35	-0.1
3,480,930	+		LRK54_RS15815	0.36	-1.1
3,480,952	-		LRK54_RS15815	0.38	+0.5
3,481,014	-		LRK54_RS15815	0.41	-1.6
3,481,018	-		LRK54_RS15815	0.41	+0.4
3,481,087	-		LRK54_RS15815	0.45	+0.2
3,481,087	-		LRK54_RS15815	0.45	+1.8
3,481,161	+		LRK54_RS15815	0.49	-0.5
3,481,197	+		LRK54_RS15815	0.51	+0.4
3,481,198	-		LRK54_RS15815	0.51	-2.3
3,481,198	-		LRK54_RS15815	0.51	-0.1
3,481,202	+		LRK54_RS15815	0.52	+1.9
3,481,254	+		LRK54_RS15815	0.55	-3.2
3,481,254	+		LRK54_RS15815	0.55	-0.8
3,481,254	+		LRK54_RS15815	0.55	-1.8
3,481,254	+		LRK54_RS15815	0.55	-0.2
3,481,255	-		LRK54_RS15815	0.55	+0.2
3,481,255	-		LRK54_RS15815	0.55	-1.0
3,481,255	-		LRK54_RS15815	0.55	+0.9
3,481,255	-		LRK54_RS15815	0.55	-0.3
3,481,255	-		LRK54_RS15815	0.55	+2.2
3,481,255	-		LRK54_RS15815	0.55	-1.4
3,481,255	-		LRK54_RS15815	0.55	+1.3
3,481,256	+		LRK54_RS15815	0.55	+0.5
3,481,256	+		LRK54_RS15815	0.55	-0.9
3,481,256	+		LRK54_RS15815	0.55	-1.3
3,481,256	+		LRK54_RS15815	0.55	-2.0
3,481,257	-		LRK54_RS15815	0.55	-0.5
3,481,257	-		LRK54_RS15815	0.55	-0.6
3,481,351	+		LRK54_RS15815	0.60	+0.4
3,481,352	-		LRK54_RS15815	0.60	-0.3
3,481,431	+		LRK54_RS15815	0.65	+0.3
3,481,431	+		LRK54_RS15815	0.65	-0.8
3,481,431	+		LRK54_RS15815	0.65	-0.2
3,481,431	+		LRK54_RS15815	0.65	-2.0
3,481,431	+		LRK54_RS15815	0.65	-0.9
3,481,431	+		LRK54_RS15815	0.65	-0.0
3,481,432	-		LRK54_RS15815	0.65	+0.8
3,481,435	+		LRK54_RS15815	0.65	-0.3
3,481,435	+		LRK54_RS15815	0.65	-1.3
3,481,435	+		LRK54_RS15815	0.65	+0.8
3,481,435	+		LRK54_RS15815	0.65	+0.5
3,481,435	+		LRK54_RS15815	0.65	-2.7
3,481,435	+		LRK54_RS15815	0.65	-0.8
3,481,435	+		LRK54_RS15815	0.65	-0.5
3,481,435	+		LRK54_RS15815	0.65	+0.8
3,481,435	+		LRK54_RS15815	0.65	-0.3
3,481,435	+		LRK54_RS15815	0.65	+0.8
3,481,435	+		LRK54_RS15815	0.65	+0.1
3,481,435	+		LRK54_RS15815	0.65	-0.8
3,481,435	+		LRK54_RS15815	0.65	-0.1
3,481,435	+		LRK54_RS15815	0.65	-0.6
3,481,435	+		LRK54_RS15815	0.65	+0.2
3,481,435	+		LRK54_RS15815	0.65	+1.0
3,481,436	-		LRK54_RS15815	0.65	-0.9
3,481,436	-		LRK54_RS15815	0.65	+1.1
3,481,436	-		LRK54_RS15815	0.65	+0.2
3,481,436	-		LRK54_RS15815	0.65	-1.2
3,481,436	-		LRK54_RS15815	0.65	-0.5
3,481,448	+		LRK54_RS15815	0.65	+1.1
3,481,449	-		LRK54_RS15815	0.66	+1.3
3,481,449	-		LRK54_RS15815	0.66	-0.8
3,481,449	-		LRK54_RS15815	0.66	-1.7
3,481,463	+		LRK54_RS15815	0.66	-0.3
3,481,590	+		LRK54_RS15815	0.73	-0.2
3,481,590	+		LRK54_RS15815	0.73	-0.5
3,481,590	+		LRK54_RS15815	0.73	-0.8
3,481,591	-		LRK54_RS15815	0.74	+2.6
3,481,661	+		LRK54_RS15815	0.77	+0.3
3,481,661	+		LRK54_RS15815	0.77	+0.1
3,481,661	+		LRK54_RS15815	0.77	+2.2
3,481,661	+		LRK54_RS15815	0.77	-0.2
3,481,661	+		LRK54_RS15815	0.77	+0.9
3,481,661	+		LRK54_RS15815	0.77	+0.2
3,481,662	-		LRK54_RS15815	0.77	-3.2
3,481,662	-		LRK54_RS15815	0.77	+0.8
3,481,662	-		LRK54_RS15815	0.77	-1.4
3,481,662	-		LRK54_RS15815	0.77	-0.4
3,481,662	-		LRK54_RS15815	0.77	-0.8
3,481,665	+		LRK54_RS15815	0.78	-0.8
3,481,665	+		LRK54_RS15815	0.78	+0.8
3,481,665	+		LRK54_RS15815	0.78	-0.1
3,481,665	+		LRK54_RS15815	0.78	-2.0
3,481,665	+		LRK54_RS15815	0.78	+0.4
3,481,665	+		LRK54_RS15815	0.78	-0.6
3,481,665	+		LRK54_RS15815	0.78	-2.5
3,481,665	+		LRK54_RS15815	0.78	-0.4
3,481,665	+		LRK54_RS15815	0.78	-0.2
3,481,665	+		LRK54_RS15815	0.78	-0.3
3,481,665	+		LRK54_RS15815	0.78	-0.0
3,481,665	+		LRK54_RS15815	0.78	+0.5
3,481,665	+		LRK54_RS15815	0.78	-0.7
3,481,666	-		LRK54_RS15815	0.78	+0.4
3,481,666	-		LRK54_RS15815	0.78	+0.2
3,481,666	-		LRK54_RS15815	0.78	-0.5
3,481,666	-		LRK54_RS15815	0.78	+2.6
3,481,666	-		LRK54_RS15815	0.78	-1.3
3,481,739	+		LRK54_RS15815	0.82	-0.2
3,481,739	+		LRK54_RS15815	0.82	-1.3
3,481,740	-		LRK54_RS15815	0.82	+0.6
3,481,740	-		LRK54_RS15815	0.82	-0.2
3,481,807	+		LRK54_RS15815	0.86	+0.2
3,481,807	+		LRK54_RS15815	0.86	+0.3
3,481,808	-		LRK54_RS15815	0.86	+0.4
3,481,808	-		LRK54_RS15815	0.86	+0.6
3,481,808	-		LRK54_RS15815	0.86	-0.2
3,481,808	-		LRK54_RS15815	0.86	-1.6
3,481,874	-		LRK54_RS15815	0.89	+0.9
3,481,962	+				-1.3
3,481,962	+				-0.5
3,481,962	+				-0.8
3,481,962	+				+0.2
3,481,963	-				-1.2
3,481,963	-				-0.6
3,481,963	-				-0.3
3,482,061	+				-0.0
3,482,062	-				-1.5
3,482,062	-				+0.8
3,482,150	+				-0.7
3,482,150	+				-0.2
3,482,150	+				+0.8
3,482,150	+				+0.8
3,482,150	+				+1.5
3,482,150	+				-1.1
3,482,150	+				+1.4
3,482,150	+				+0.5
3,482,150	+				-0.7
3,482,150	+				-0.2
3,482,150	+				+0.4
3,482,151	-				+0.4
3,482,151	-				-1.0
3,482,151	-				-1.0
3,482,151	-				+1.1
3,482,151	-				-0.4
3,482,151	-				+2.3
3,482,151	-				+1.6
3,482,151	-				+0.2
3,482,151	-				-1.1
3,482,151	-				-2.3
3,482,151	-				-1.6
3,482,151	-				-1.1
3,482,151	-				-0.9
3,482,264	+				+0.8
3,482,264	+				-1.5
3,482,264	+				+1.4
3,482,264	+				+0.3
3,482,264	+				-2.0
3,482,264	+				-0.1
3,482,264	+				+0.4
3,482,265	-				-0.2
3,482,265	-				+1.3
3,482,265	-				-0.8
3,482,265	-				-0.1
3,482,363	+		LRK54_RS15820	0.25	-2.0
3,482,363	+		LRK54_RS15820	0.25	-1.0
3,482,363	+		LRK54_RS15820	0.25	+0.1
3,482,364	-		LRK54_RS15820	0.25	+0.2
3,482,364	-		LRK54_RS15820	0.25	-1.1
3,482,364	-		LRK54_RS15820	0.25	-1.1
3,482,427	+		LRK54_RS15820	0.46	-0.9
3,482,553	+		LRK54_RS15820	0.89	-0.4
3,482,633	+				+0.4
3,482,633	+				+1.1
3,482,634	-				-0.1
3,482,634	-				-1.7
3,482,694	+				-0.4
3,482,694	+				-1.8
3,482,694	+				-0.8
3,482,694	+				-0.8
3,482,694	+				+0.4
3,482,694	+				+0.9
3,482,694	+				-0.1
3,482,695	-				+2.4
3,482,695	-				+0.2
3,482,695	-				-2.3
3,482,701	-				-0.4
3,482,730	+				-0.6
3,482,730	+				-0.3
3,482,754	+				-0.2
3,482,754	+				-0.2
3,482,754	+				+0.2
3,482,867	+		LRK54_RS15825	0.13	+0.1
3,482,903	+		LRK54_RS15825	0.15	-0.2
3,482,904	-		LRK54_RS15825	0.15	+0.7
3,482,904	-		LRK54_RS15825	0.15	-2.4
3,482,917	-		LRK54_RS15825	0.16	-0.1
3,482,917	-		LRK54_RS15825	0.16	-0.6
3,482,917	-		LRK54_RS15825	0.16	+0.1
3,482,917	-		LRK54_RS15825	0.16	+0.7