Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02400

Experiment: planktonic; Day2; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02395 and LRK54_RS02400 overlap by 4 nucleotidesLRK54_RS02400 and LRK54_RS02405 are separated by 28 nucleotidesLRK54_RS02405 and LRK54_RS02410 overlap by 4 nucleotides LRK54_RS02395: LRK54_RS02395 - acetylornithine deacetylase, at 520,706 to 521,839 _RS02395 LRK54_RS02400: LRK54_RS02400 - argininosuccinate synthase, at 521,836 to 523,029 _RS02400 LRK54_RS02405: LRK54_RS02405 - OsmC family protein, at 523,058 to 523,531 _RS02405 LRK54_RS02410: LRK54_RS02410 - FMN-binding negative transcriptional regulator, at 523,528 to 524,151 _RS02410 Position (kb) 521 522 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 520.851 kb on + strand, within LRK54_RS02395at 520.851 kb on + strand, within LRK54_RS02395at 520.852 kb on - strand, within LRK54_RS02395at 520.852 kb on - strand, within LRK54_RS02395at 520.866 kb on + strand, within LRK54_RS02395at 521.400 kb on + strand, within LRK54_RS02395at 521.400 kb on + strand, within LRK54_RS02395at 521.400 kb on + strand, within LRK54_RS02395at 521.401 kb on - strand, within LRK54_RS02395at 521.401 kb on - strand, within LRK54_RS02395at 521.401 kb on - strand, within LRK54_RS02395at 521.736 kb on + strandat 521.736 kb on + strandat 521.737 kb on - strandat 521.737 kb on - strandat 521.933 kb on + strandat 521.933 kb on + strandat 521.933 kb on + strandat 521.933 kb on + strandat 521.933 kb on + strandat 521.933 kb on + strandat 521.933 kb on + strandat 521.934 kb on - strandat 521.934 kb on - strandat 521.934 kb on - strandat 521.934 kb on - strandat 522.095 kb on + strand, within LRK54_RS02400at 522.096 kb on - strand, within LRK54_RS02400at 522.096 kb on - strand, within LRK54_RS02400at 522.096 kb on - strand, within LRK54_RS02400at 522.258 kb on - strand, within LRK54_RS02400at 522.258 kb on - strand, within LRK54_RS02400at 522.278 kb on + strand, within LRK54_RS02400at 522.278 kb on + strand, within LRK54_RS02400at 522.278 kb on + strand, within LRK54_RS02400at 522.279 kb on - strand, within LRK54_RS02400at 522.315 kb on + strand, within LRK54_RS02400at 522.315 kb on + strand, within LRK54_RS02400at 522.315 kb on + strand, within LRK54_RS02400at 522.315 kb on + strand, within LRK54_RS02400at 522.316 kb on - strand, within LRK54_RS02400at 522.316 kb on - strand, within LRK54_RS02400at 522.316 kb on - strand, within LRK54_RS02400at 522.316 kb on - strand, within LRK54_RS02400at 522.316 kb on - strand, within LRK54_RS02400at 522.316 kb on - strand, within LRK54_RS02400at 522.506 kb on + strand, within LRK54_RS02400at 522.506 kb on + strand, within LRK54_RS02400at 522.506 kb on + strand, within LRK54_RS02400at 522.506 kb on + strand, within LRK54_RS02400at 522.506 kb on + strand, within LRK54_RS02400at 522.506 kb on + strand, within LRK54_RS02400at 522.506 kb on + strand, within LRK54_RS02400at 522.507 kb on - strand, within LRK54_RS02400at 522.507 kb on - strand, within LRK54_RS02400at 522.507 kb on - strand, within LRK54_RS02400at 522.507 kb on - strand, within LRK54_RS02400at 522.507 kb on - strand, within LRK54_RS02400at 522.507 kb on - strand, within LRK54_RS02400at 522.507 kb on - strand, within LRK54_RS02400at 522.507 kb on - strand, within LRK54_RS02400at 522.563 kb on + strand, within LRK54_RS02400at 522.621 kb on - strand, within LRK54_RS02400at 522.746 kb on + strand, within LRK54_RS02400at 522.747 kb on - strand, within LRK54_RS02400at 522.783 kb on - strand, within LRK54_RS02400at 522.939 kb on + strandat 522.939 kb on + strandat 522.939 kb on + strandat 522.939 kb on + strandat 522.940 kb on - strandat 522.940 kb on - strandat 522.940 kb on - strandat 522.968 kb on + strandat 522.968 kb on + strandat 522.969 kb on - strandat 522.969 kb on - strandat 522.969 kb on - strandat 523.267 kb on + strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.311 kb on + strand, within LRK54_RS02405at 523.311 kb on + strand, within LRK54_RS02405at 523.312 kb on - strand, within LRK54_RS02405at 523.312 kb on - strand, within LRK54_RS02405at 523.312 kb on - strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.512 kb on + strandat 523.513 kb on - strandat 523.513 kb on - strandat 523.513 kb on - strandat 523.859 kb on + strand, within LRK54_RS02410at 523.859 kb on + strand, within LRK54_RS02410at 523.859 kb on + strand, within LRK54_RS02410at 523.859 kb on + strand, within LRK54_RS02410at 523.860 kb on - strand, within LRK54_RS02410at 523.860 kb on - strand, within LRK54_RS02410at 523.905 kb on - strand, within LRK54_RS02410at 523.922 kb on + strand, within LRK54_RS02410at 523.922 kb on + strand, within LRK54_RS02410at 523.922 kb on + strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Aluminum chloride 1mM
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520,851 + LRK54_RS02395 0.13 -2.0
520,851 + LRK54_RS02395 0.13 -2.5
520,852 - LRK54_RS02395 0.13 -0.9
520,852 - LRK54_RS02395 0.13 -0.4
520,866 + LRK54_RS02395 0.14 -2.2
521,400 + LRK54_RS02395 0.61 +2.3
521,400 + LRK54_RS02395 0.61 -0.4
521,400 + LRK54_RS02395 0.61 -1.4
521,401 - LRK54_RS02395 0.61 -0.1
521,401 - LRK54_RS02395 0.61 -0.8
521,401 - LRK54_RS02395 0.61 -0.8
521,736 + -0.6
521,736 + -0.8
521,737 - +1.0
521,737 - -0.1
521,933 + -0.1
521,933 + +1.1
521,933 + +1.5
521,933 + -0.6
521,933 + +0.7
521,933 + -2.8
521,933 + +0.2
521,934 - +0.2
521,934 - +0.3
521,934 - +2.5
521,934 - -0.7
522,095 + LRK54_RS02400 0.22 -1.4
522,096 - LRK54_RS02400 0.22 +1.0
522,096 - LRK54_RS02400 0.22 -0.4
522,096 - LRK54_RS02400 0.22 +0.7
522,258 - LRK54_RS02400 0.35 -0.6
522,258 - LRK54_RS02400 0.35 +0.8
522,278 + LRK54_RS02400 0.37 -2.4
522,278 + LRK54_RS02400 0.37 +0.2
522,278 + LRK54_RS02400 0.37 +0.3
522,279 - LRK54_RS02400 0.37 -0.9
522,315 + LRK54_RS02400 0.40 +0.9
522,315 + LRK54_RS02400 0.40 -0.3
522,315 + LRK54_RS02400 0.40 +0.3
522,315 + LRK54_RS02400 0.40 +1.8
522,316 - LRK54_RS02400 0.40 +1.2
522,316 - LRK54_RS02400 0.40 +2.8
522,316 - LRK54_RS02400 0.40 -0.1
522,316 - LRK54_RS02400 0.40 +2.3
522,316 - LRK54_RS02400 0.40 -0.4
522,316 - LRK54_RS02400 0.40 -2.1
522,506 + LRK54_RS02400 0.56 +0.2
522,506 + LRK54_RS02400 0.56 -0.1
522,506 + LRK54_RS02400 0.56 +0.8
522,506 + LRK54_RS02400 0.56 +1.0
522,506 + LRK54_RS02400 0.56 +0.5
522,506 + LRK54_RS02400 0.56 -0.8
522,506 + LRK54_RS02400 0.56 -0.7
522,507 - LRK54_RS02400 0.56 +0.2
522,507 - LRK54_RS02400 0.56 -0.8
522,507 - LRK54_RS02400 0.56 -0.2
522,507 - LRK54_RS02400 0.56 +0.3
522,507 - LRK54_RS02400 0.56 -1.7
522,507 - LRK54_RS02400 0.56 +2.5
522,507 - LRK54_RS02400 0.56 -0.6
522,507 - LRK54_RS02400 0.56 -0.7
522,563 + LRK54_RS02400 0.61 +0.3
522,621 - LRK54_RS02400 0.66 +0.1
522,746 + LRK54_RS02400 0.76 -0.6
522,747 - LRK54_RS02400 0.76 -0.0
522,783 - LRK54_RS02400 0.79 +1.0
522,939 + +1.0
522,939 + -0.4
522,939 + +0.0
522,939 + +0.3
522,940 - -0.2
522,940 - +0.3
522,940 - +1.3
522,968 + -1.4
522,968 + -1.4
522,969 - +0.2
522,969 - -1.0
522,969 - -1.6
523,267 + LRK54_RS02405 0.44 -1.3
523,268 - LRK54_RS02405 0.44 +1.0
523,268 - LRK54_RS02405 0.44 +0.2
523,268 - LRK54_RS02405 0.44 -1.1
523,268 - LRK54_RS02405 0.44 +0.3
523,268 - LRK54_RS02405 0.44 +0.3
523,268 - LRK54_RS02405 0.44 +0.8
523,268 - LRK54_RS02405 0.44 -1.4
523,268 - LRK54_RS02405 0.44 -1.4
523,269 + LRK54_RS02405 0.45 +0.5
523,269 + LRK54_RS02405 0.45 +0.6
523,269 + LRK54_RS02405 0.45 -0.2
523,269 + LRK54_RS02405 0.45 -0.1
523,269 + LRK54_RS02405 0.45 +0.6
523,269 + LRK54_RS02405 0.45 +0.6
523,269 + LRK54_RS02405 0.45 -0.7
523,269 + LRK54_RS02405 0.45 -1.6
523,269 + LRK54_RS02405 0.45 -1.1
523,270 - LRK54_RS02405 0.45 +0.9
523,270 - LRK54_RS02405 0.45 -0.8
523,270 - LRK54_RS02405 0.45 -0.6
523,270 - LRK54_RS02405 0.45 +2.9
523,270 - LRK54_RS02405 0.45 -0.2
523,270 - LRK54_RS02405 0.45 +0.4
523,270 - LRK54_RS02405 0.45 +0.1
523,270 - LRK54_RS02405 0.45 +0.6
523,311 + LRK54_RS02405 0.53 +1.0
523,311 + LRK54_RS02405 0.53 -0.9
523,312 - LRK54_RS02405 0.54 -0.3
523,312 - LRK54_RS02405 0.54 +0.2
523,312 - LRK54_RS02405 0.54 +1.8
523,452 + LRK54_RS02405 0.83 -0.2
523,452 + LRK54_RS02405 0.83 -0.7
523,452 + LRK54_RS02405 0.83 -1.3
523,452 + LRK54_RS02405 0.83 -0.9
523,452 + LRK54_RS02405 0.83 -0.7
523,452 + LRK54_RS02405 0.83 +0.8
523,452 + LRK54_RS02405 0.83 -0.8
523,452 + LRK54_RS02405 0.83 -1.6
523,453 - LRK54_RS02405 0.83 +0.1
523,453 - LRK54_RS02405 0.83 -0.7
523,453 - LRK54_RS02405 0.83 -2.3
523,453 - LRK54_RS02405 0.83 -1.0
523,453 - LRK54_RS02405 0.83 -0.6
523,453 - LRK54_RS02405 0.83 -1.1
523,512 + +0.6
523,513 - -0.7
523,513 - -0.7
523,513 - +0.2
523,859 + LRK54_RS02410 0.53 +2.7
523,859 + LRK54_RS02410 0.53 +0.4
523,859 + LRK54_RS02410 0.53 +0.5
523,859 + LRK54_RS02410 0.53 +1.8
523,860 - LRK54_RS02410 0.53 -1.6
523,860 - LRK54_RS02410 0.53 -0.3
523,905 - LRK54_RS02410 0.60 +0.6
523,922 + LRK54_RS02410 0.63 +1.0
523,922 + LRK54_RS02410 0.63 -0.6
523,922 + LRK54_RS02410 0.63 +0.0
523,923 - LRK54_RS02410 0.63 +3.3
523,923 - LRK54_RS02410 0.63 +1.3
523,923 - LRK54_RS02410 0.63 -0.7
523,923 - LRK54_RS02410 0.63 +0.6
523,923 - LRK54_RS02410 0.63 -1.2
523,923 - LRK54_RS02410 0.63 -1.6
523,923 - LRK54_RS02410 0.63 +0.2

Or see this region's nucleotide sequence