Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05460

Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Aluminum chloride 1mM
1,177,269	+				-2.2
1,177,269	+				-0.4
1,177,269	+				+4.5
1,177,269	+				-2.2
1,177,269	+				+1.0
1,177,269	+				-1.4
1,177,269	+				+1.2
1,177,269	+				+0.0
1,177,269	+				+0.4
1,177,269	+				-1.6
1,177,269	+				-0.8
1,177,269	+				+1.9
1,177,269	+				-0.3
1,177,269	+				+1.3
1,177,269	+				+1.2
1,177,269	+				-3.8
1,177,269	+				+0.0
1,177,270	-				+0.9
1,177,270	-				-0.1
1,177,270	-				+1.4
1,177,270	-				-0.3
1,177,270	-				-2.1
1,177,270	-				-1.4
1,177,270	-				-1.2
1,177,270	-				+0.2
1,177,270	-				-1.8
1,177,270	-				+0.2
1,177,270	-				-0.5
1,177,270	-				-1.3
1,177,270	-				+0.4
1,177,270	-				-2.3
1,177,270	-				+1.6
1,177,270	-				+1.7
1,177,270	-				+0.4
1,177,270	-				-0.3
1,177,270	-				-0.1
1,177,271	+				+0.0
1,177,271	+				+0.2
1,177,271	+				-1.6
1,177,271	+				-1.4
1,177,271	+				+1.9
1,177,271	+				-1.2
1,177,271	+				+0.7
1,177,271	+				+2.1
1,177,271	+				-0.1
1,177,271	+				+0.8
1,177,271	+				-0.7
1,177,271	+				+0.5
1,177,271	+				-0.3
1,177,271	+				-1.4
1,177,272	-				-0.7
1,177,272	-				-0.3
1,177,272	-				-1.5
1,177,272	-				+0.6
1,177,272	-				-0.7
1,177,272	-				-1.9
1,177,272	-				-0.8
1,177,272	-				+0.2
1,177,272	-				-0.9
1,177,272	-				+0.4
1,177,272	-				+0.4
1,177,272	-				-1.1
1,177,272	-				-0.3
1,177,272	-				+0.2
1,177,272	-				-1.0
1,177,272	-				-0.2
1,177,272	-				-2.0
1,177,272	-				+0.2
1,177,272	-				-0.8
1,177,272	-				-0.4
1,177,332	+				-0.1
1,177,332	+				+0.7
1,177,332	+				+1.1
1,177,332	+				-0.9
1,177,332	+				-1.4
1,177,332	+				-1.7
1,177,332	+				+0.2
1,177,332	+				-0.1
1,177,332	+				+1.9
1,177,332	+				-2.9
1,177,332	+				-0.6
1,177,332	+				+0.2
1,177,332	+				-3.4
1,177,332	+				-1.9
1,177,333	-				-2.6
1,177,333	-				-0.3
1,177,333	-				-1.7
1,177,333	-				+1.1
1,177,333	-				-0.7
1,177,333	-				-0.1
1,177,333	-				-2.5
1,177,333	-				-0.7
1,177,333	-				+0.3
1,177,333	-				+0.5
1,177,333	-				-2.5
1,177,518	+		LRK54_RS05455	0.29	-0.7
1,177,518	+		LRK54_RS05455	0.29	+1.4
1,177,518	+		LRK54_RS05455	0.29	-0.8
1,177,519	-		LRK54_RS05455	0.29	+1.6
1,177,519	-		LRK54_RS05455	0.29	-0.2
1,177,519	-		LRK54_RS05455	0.29	+1.4
1,177,519	-		LRK54_RS05455	0.29	-0.2
1,177,519	-		LRK54_RS05455	0.29	-1.0
1,177,519	-		LRK54_RS05455	0.29	-0.6
1,177,571	+		LRK54_RS05455	0.36	+0.9
1,177,572	-		LRK54_RS05455	0.37	-1.2
1,177,572	-		LRK54_RS05455	0.37	-0.2
1,177,727	+		LRK54_RS05455	0.57	-2.3
1,177,727	+		LRK54_RS05455	0.57	-0.8
1,177,727	+		LRK54_RS05455	0.57	-0.3
1,177,727	+		LRK54_RS05455	0.57	-0.7
1,177,727	+		LRK54_RS05455	0.57	-0.4
1,177,727	+		LRK54_RS05455	0.57	-0.8
1,177,727	+		LRK54_RS05455	0.57	-0.1
1,177,727	+		LRK54_RS05455	0.57	+2.4
1,177,727	+		LRK54_RS05455	0.57	+0.3
1,177,727	+		LRK54_RS05455	0.57	+0.8
1,177,727	+		LRK54_RS05455	0.57	-1.6
1,177,727	+		LRK54_RS05455	0.57	-0.5
1,177,727	+		LRK54_RS05455	0.57	-1.7
1,177,728	-		LRK54_RS05455	0.58	-1.4
1,177,728	-		LRK54_RS05455	0.58	-0.6
1,177,728	-		LRK54_RS05455	0.58	-0.4
1,177,728	-		LRK54_RS05455	0.58	+1.2
1,177,728	-		LRK54_RS05455	0.58	+1.1
1,177,728	-		LRK54_RS05455	0.58	-0.4
1,177,728	-		LRK54_RS05455	0.58	-1.4
1,177,728	-		LRK54_RS05455	0.58	+2.0
1,177,728	-		LRK54_RS05455	0.58	-1.1
1,177,728	-		LRK54_RS05455	0.58	+0.3
1,177,781	+		LRK54_RS05455	0.65	+0.2
1,177,781	+		LRK54_RS05455	0.65	+1.0
1,177,781	+		LRK54_RS05455	0.65	-0.1
1,177,781	+		LRK54_RS05455	0.65	-0.2
1,177,781	+		LRK54_RS05455	0.65	+0.1
1,177,781	+		LRK54_RS05455	0.65	-2.6
1,177,781	+		LRK54_RS05455	0.65	-0.2
1,177,781	+		LRK54_RS05455	0.65	-0.2
1,177,781	+		LRK54_RS05455	0.65	-0.9
1,177,781	+		LRK54_RS05455	0.65	+1.6
1,177,781	+		LRK54_RS05455	0.65	-0.6
1,177,781	+		LRK54_RS05455	0.65	+0.8
1,177,781	+		LRK54_RS05455	0.65	-2.1
1,177,781	+		LRK54_RS05455	0.65	+0.3
1,177,781	+		LRK54_RS05455	0.65	-1.3
1,177,781	+		LRK54_RS05455	0.65	+1.7
1,177,781	+		LRK54_RS05455	0.65	-1.5
1,177,781	+		LRK54_RS05455	0.65	-2.0
1,177,781	+		LRK54_RS05455	0.65	-0.2
1,177,781	+		LRK54_RS05455	0.65	-2.5
1,177,781	+		LRK54_RS05455	0.65	+0.9
1,177,781	+		LRK54_RS05455	0.65	-0.2
1,177,781	+		LRK54_RS05455	0.65	-0.3
1,177,781	+		LRK54_RS05455	0.65	-0.1
1,177,781	+		LRK54_RS05455	0.65	+0.1
1,177,781	+		LRK54_RS05455	0.65	-1.0
1,177,782	-		LRK54_RS05455	0.65	+1.1
1,177,782	-		LRK54_RS05455	0.65	-2.4
1,177,782	-		LRK54_RS05455	0.65	-1.4
1,177,782	-		LRK54_RS05455	0.65	+2.1
1,177,782	-		LRK54_RS05455	0.65	+0.1
1,177,782	-		LRK54_RS05455	0.65	-0.6
1,177,782	-		LRK54_RS05455	0.65	+2.3
1,177,782	-		LRK54_RS05455	0.65	-0.1
1,177,782	-		LRK54_RS05455	0.65	+0.9
1,177,782	-		LRK54_RS05455	0.65	+1.3
1,177,782	-		LRK54_RS05455	0.65	-1.7
1,177,782	-		LRK54_RS05455	0.65	-0.9
1,177,782	-		LRK54_RS05455	0.65	+1.9
1,177,782	-		LRK54_RS05455	0.65	+0.5
1,177,782	-		LRK54_RS05455	0.65	+0.4
1,177,782	-		LRK54_RS05455	0.65	+1.9
1,177,782	-		LRK54_RS05455	0.65	+0.9
1,177,782	-		LRK54_RS05455	0.65	-1.1
1,177,782	-		LRK54_RS05455	0.65	-0.4
1,177,782	-		LRK54_RS05455	0.65	+0.5
1,177,782	-		LRK54_RS05455	0.65	-1.6
1,177,782	-		LRK54_RS05455	0.65	-0.3
1,177,782	-		LRK54_RS05455	0.65	+1.3
1,177,782	-		LRK54_RS05455	0.65	-0.9
1,177,782	-		LRK54_RS05455	0.65	+0.0
1,177,782	-		LRK54_RS05455	0.65	-0.1
1,177,782	-		LRK54_RS05455	0.65	-2.3
1,177,782	-		LRK54_RS05455	0.65	-3.6
1,177,782	-		LRK54_RS05455	0.65	+0.2
1,177,782	-		LRK54_RS05455	0.65	+0.7
1,177,782	-		LRK54_RS05455	0.65	+0.4
1,177,814	+		LRK54_RS05455	0.69	+0.6
1,177,814	+		LRK54_RS05455	0.69	-0.4
1,177,814	+		LRK54_RS05455	0.69	-0.6
1,177,814	+		LRK54_RS05455	0.69	+0.9
1,177,814	+		LRK54_RS05455	0.69	-0.4
1,177,814	+		LRK54_RS05455	0.69	+2.5
1,177,814	+		LRK54_RS05455	0.69	-1.3
1,177,814	+		LRK54_RS05455	0.69	-0.2
1,177,814	+		LRK54_RS05455	0.69	+0.2
1,177,814	+		LRK54_RS05455	0.69	-0.1
1,177,814	+		LRK54_RS05455	0.69	-1.4
1,177,814	+		LRK54_RS05455	0.69	+1.4
1,177,814	+		LRK54_RS05455	0.69	-0.2
1,177,814	+		LRK54_RS05455	0.69	+0.1
1,177,815	-		LRK54_RS05455	0.69	+1.8
1,177,815	-		LRK54_RS05455	0.69	-2.3
1,177,815	-		LRK54_RS05455	0.69	+0.6
1,177,815	-		LRK54_RS05455	0.69	+0.2
1,177,815	-		LRK54_RS05455	0.69	+3.9
1,177,815	-		LRK54_RS05455	0.69	-0.6
1,177,815	-		LRK54_RS05455	0.69	-0.9
1,177,815	-		LRK54_RS05455	0.69	-0.2
1,177,815	-		LRK54_RS05455	0.69	+0.5
1,177,815	-		LRK54_RS05455	0.69	+0.7
1,177,815	-		LRK54_RS05455	0.69	-1.6
1,177,815	-		LRK54_RS05455	0.69	+1.4
1,177,815	-		LRK54_RS05455	0.69	+0.5
1,177,815	-		LRK54_RS05455	0.69	-0.4
1,177,841	+		LRK54_RS05455	0.73	-3.2
1,177,841	+		LRK54_RS05455	0.73	+0.6
1,177,841	+		LRK54_RS05455	0.73	-1.5
1,177,841	+		LRK54_RS05455	0.73	+1.0
1,177,841	+		LRK54_RS05455	0.73	-1.8
1,177,841	+		LRK54_RS05455	0.73	+0.7
1,177,841	+		LRK54_RS05455	0.73	-1.1
1,177,842	-		LRK54_RS05455	0.73	-0.1
1,177,842	-		LRK54_RS05455	0.73	-1.7
1,177,842	-		LRK54_RS05455	0.73	+0.5
1,177,842	-		LRK54_RS05455	0.73	-1.4
1,177,842	-		LRK54_RS05455	0.73	+1.6
1,177,842	-		LRK54_RS05455	0.73	+0.0
1,177,842	-		LRK54_RS05455	0.73	-1.4
1,177,842	-		LRK54_RS05455	0.73	+1.9
1,177,842	-		LRK54_RS05455	0.73	-1.5
1,177,842	-		LRK54_RS05455	0.73	-0.3
1,177,842	-		LRK54_RS05455	0.73	-0.2
1,177,842	-		LRK54_RS05455	0.73	+1.1
1,177,842	-		LRK54_RS05455	0.73	+1.0
1,177,943	+		LRK54_RS05455	0.87	+1.4
1,177,943	+		LRK54_RS05455	0.87	+0.4
1,177,943	+		LRK54_RS05455	0.87	+0.6
1,177,943	+		LRK54_RS05455	0.87	-0.0
1,177,943	+		LRK54_RS05455	0.87	-0.3
1,177,943	+		LRK54_RS05455	0.87	-0.4
1,177,943	+		LRK54_RS05455	0.87	-0.8
1,177,943	+		LRK54_RS05455	0.87	+0.6
1,177,944	-		LRK54_RS05455	0.87	-0.2
1,177,944	-		LRK54_RS05455	0.87	-1.1
1,177,944	-		LRK54_RS05455	0.87	-1.0
1,177,982	+				-0.8
1,177,982	+				-0.1
1,177,982	+				+0.8
1,177,982	+				-2.8
1,177,982	+				-0.4
1,177,982	+				-1.5
1,177,982	+				-0.5
1,177,982	+				-0.4
1,177,982	+				-3.4
1,177,982	+				+1.9
1,177,982	+				-2.7
1,177,982	+				-1.6
1,177,983	-				-0.7
1,177,983	-				+0.0
1,177,983	-				+0.6
1,177,983	-				-1.3
1,177,983	-				+0.8
1,177,983	-				-1.2
1,177,983	-				-2.4
1,177,983	-				-1.2
1,177,983	-				+1.0
1,177,983	-				-0.8
1,177,983	-				-1.0
1,177,983	-				-0.2
1,177,983	-				-0.0
1,177,983	-				-0.1
1,177,983	-				-3.2
1,177,983	-				-1.2
1,177,983	-				+1.0
1,178,003	+				+0.5
1,178,003	+				+1.4
1,178,003	+				+0.2
1,178,003	+				+0.8
1,178,004	-				-1.8
1,178,004	-				+2.9
1,178,004	-				+1.1
1,178,070	+				+0.0
1,178,070	+				+1.4
1,178,070	+				+1.2
1,178,070	+				-0.5
1,178,070	+				+1.9
1,178,070	+				-1.4
1,178,070	+				-0.6
1,178,070	+				+0.9
1,178,070	+				-1.9
1,178,071	-				-1.9
1,178,071	-				-0.8
1,178,071	-				-0.7
1,178,071	-				-1.1
1,178,071	-				-1.4
1,178,071	-				-0.5
1,178,094	+				+0.6
1,178,094	+				+1.2
1,178,094	+				+0.6
1,178,095	-				+0.1
1,178,095	-				+1.2
1,178,095	-				-2.7
1,178,185	+		LRK54_RS05460	0.10	-0.7
1,178,185	+		LRK54_RS05460	0.10	+0.1
1,178,185	+		LRK54_RS05460	0.10	+0.5
1,178,185	+		LRK54_RS05460	0.10	-2.0
1,178,185	+		LRK54_RS05460	0.10	+1.9
1,178,185	+		LRK54_RS05460	0.10	+1.9
1,178,185	+		LRK54_RS05460	0.10	-1.9
1,178,185	+		LRK54_RS05460	0.10	-3.3
1,178,185	+		LRK54_RS05460	0.10	-1.2
1,178,185	+		LRK54_RS05460	0.10	+0.3
1,178,185	+		LRK54_RS05460	0.10	+1.1
1,178,185	+		LRK54_RS05460	0.10	+0.9
1,178,185	+		LRK54_RS05460	0.10	+1.1
1,178,185	+		LRK54_RS05460	0.10	+0.3
1,178,185	+		LRK54_RS05460	0.10	-0.5
1,178,185	+		LRK54_RS05460	0.10	-0.9
1,178,185	+		LRK54_RS05460	0.10	+0.4
1,178,185	+		LRK54_RS05460	0.10	+1.6
1,178,185	+		LRK54_RS05460	0.10	-1.2
1,178,186	-		LRK54_RS05460	0.11	+0.3
1,178,186	-		LRK54_RS05460	0.11	-0.8
1,178,186	-		LRK54_RS05460	0.11	-2.1
1,178,186	-		LRK54_RS05460	0.11	+1.6
1,178,186	-		LRK54_RS05460	0.11	-1.5
1,178,186	-		LRK54_RS05460	0.11	-2.3
1,178,186	-		LRK54_RS05460	0.11	+1.4
1,178,186	-		LRK54_RS05460	0.11	-1.4
1,178,186	-		LRK54_RS05460	0.11	-2.1
1,178,186	-		LRK54_RS05460	0.11	+2.4
1,178,210	+		LRK54_RS05460	0.16	-1.5
1,178,210	+		LRK54_RS05460	0.16	-0.9
1,178,306	-		LRK54_RS05460	0.39	+1.4
1,178,306	-		LRK54_RS05460	0.39	-1.3
1,178,474	+		LRK54_RS05460	0.78	-1.9
1,178,474	+		LRK54_RS05460	0.78	-2.7
1,178,474	+		LRK54_RS05460	0.78	+0.0
1,178,474	+		LRK54_RS05460	0.78	-2.1
1,178,474	+		LRK54_RS05460	0.78	-1.3
1,178,474	+		LRK54_RS05460	0.78	-0.1
1,178,474	+		LRK54_RS05460	0.78	-0.9
1,178,474	+		LRK54_RS05460	0.78	-1.4
1,178,474	+		LRK54_RS05460	0.78	-1.5
1,178,474	+		LRK54_RS05460	0.78	+0.6
1,178,475	-		LRK54_RS05460	0.78	-0.4
1,178,475	-		LRK54_RS05460	0.78	-1.2
1,178,475	-		LRK54_RS05460	0.78	-1.9
1,178,475	-		LRK54_RS05460	0.78	-2.2
1,178,475	-		LRK54_RS05460	0.78	-2.1
1,178,554	+				-0.1
1,178,554	+				-1.3
1,178,554	+				-0.4
1,178,554	+				-0.9
1,178,554	+				+0.9
1,178,554	+				+0.1
1,178,554	+				-1.0
1,178,554	+				-0.1
1,178,554	+				-1.3
1,178,554	+				+0.7
1,178,554	+				+0.6
1,178,554	+				+0.1
1,178,554	+				-1.3
1,178,554	+				-1.8
1,178,554	+				-0.5
1,178,554	+				+0.6
1,178,554	+				+0.5
1,178,554	+				-0.2
1,178,555	-				-0.4
1,178,555	-				-1.7
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