Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02855 and LRK54_RS02860 are separated by 764 nucleotides LRK54_RS02860 and LRK54_RS02865 are separated by 32 nucleotides LRK54_RS02865 and LRK54_RS02870 are separated by 178 nucleotides
LRK54_RS02855: LRK54_RS02855 - type I restriction-modification system subunit M, at 611,008 to 612,627
_RS02855
LRK54_RS02860: LRK54_RS02860 - type II toxin-antitoxin system HicB family antitoxin, at 613,392 to 613,811
_RS02860
LRK54_RS02865: LRK54_RS02865 - type II toxin-antitoxin system HicA family toxin, at 613,844 to 614,020
_RS02865
LRK54_RS02870: LRK54_RS02870 - DUF502 domain-containing protein, at 614,199 to 614,876
_RS02870
Position (kb) 613
614 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 612.394 kb on + strand, within LRK54_RS02855 at 612.394 kb on + strand, within LRK54_RS02855 at 612.395 kb on - strand, within LRK54_RS02855 at 612.395 kb on - strand, within LRK54_RS02855 at 612.395 kb on - strand, within LRK54_RS02855 at 612.463 kb on + strand, within LRK54_RS02855 at 612.463 kb on + strand, within LRK54_RS02855 at 612.464 kb on - strand, within LRK54_RS02855 at 612.484 kb on + strand at 612.485 kb on - strand at 612.521 kb on + strand at 612.521 kb on + strand at 612.521 kb on + strand at 612.522 kb on - strand at 612.522 kb on - strand at 612.522 kb on - strand at 612.756 kb on + strand at 612.757 kb on - strand at 612.757 kb on - strand at 612.757 kb on - strand at 612.757 kb on - strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.086 kb on - strand at 613.086 kb on - strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.393 kb on + strand at 613.393 kb on + strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.567 kb on + strand, within LRK54_RS02860 at 613.841 kb on + strand at 613.841 kb on + strand at 613.841 kb on + strand at 613.842 kb on - strand at 613.842 kb on - strand at 613.935 kb on + strand, within LRK54_RS02865 at 613.936 kb on - strand, within LRK54_RS02865 at 614.013 kb on + strand at 614.013 kb on + strand at 614.013 kb on + strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.052 kb on + strand at 614.052 kb on + strand at 614.052 kb on + strand at 614.052 kb on + strand at 614.053 kb on - strand at 614.053 kb on - strand at 614.053 kb on - strand at 614.053 kb on - strand at 614.134 kb on + strand at 614.134 kb on + strand at 614.134 kb on + strand at 614.134 kb on + strand at 614.134 kb on + strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.164 kb on + strand at 614.164 kb on + strand at 614.164 kb on + strand at 614.164 kb on + strand at 614.164 kb on + strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.223 kb on + strand at 614.224 kb on - strand at 614.364 kb on - strand, within LRK54_RS02870 at 614.364 kb on - strand, within LRK54_RS02870 at 614.364 kb on - strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.434 kb on - strand, within LRK54_RS02870 at 614.434 kb on - strand, within LRK54_RS02870 at 614.434 kb on - strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.530 kb on - strand, within LRK54_RS02870 at 614.530 kb on - strand, within LRK54_RS02870 at 614.558 kb on - strand, within LRK54_RS02870 at 614.721 kb on + strand, within LRK54_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Aluminum chloride 1mM remove 612,394 + LRK54_RS02855 0.86 +0.4 612,394 + LRK54_RS02855 0.86 +1.8 612,395 - LRK54_RS02855 0.86 -0.5 612,395 - LRK54_RS02855 0.86 +1.3 612,395 - LRK54_RS02855 0.86 -0.7 612,463 + LRK54_RS02855 0.90 +0.8 612,463 + LRK54_RS02855 0.90 +1.8 612,464 - LRK54_RS02855 0.90 -0.3 612,484 + -1.3 612,485 - +0.5 612,521 + -0.6 612,521 + +1.5 612,521 + -2.3 612,522 - -2.2 612,522 - -1.3 612,522 - +0.7 612,756 + +0.3 612,757 - -1.0 612,757 - -1.4 612,757 - -0.8 612,757 - -1.2 613,074 + +2.9 613,074 + -0.4 613,074 + -0.9 613,074 + +0.2 613,074 + -0.6 613,074 + +0.5 613,074 + +1.9 613,074 + -0.5 613,074 + -1.1 613,075 - +1.3 613,075 - -2.2 613,075 - -1.2 613,075 - -0.3 613,075 - +0.2 613,075 - +0.0 613,075 - -1.9 613,075 - +2.9 613,075 - +0.3 613,086 - -1.3 613,086 - -0.8 613,173 + -1.8 613,173 + +1.5 613,173 + +0.9 613,173 + -0.1 613,173 + +1.5 613,174 - -1.4 613,174 - -0.6 613,174 - -0.3 613,174 - +1.9 613,174 - +0.9 613,174 - +0.0 613,323 + -2.4 613,323 + -0.7 613,323 + -0.3 613,323 + -1.0 613,323 + +0.2 613,323 + -0.5 613,323 + -0.2 613,323 + -2.6 613,323 + -1.7 613,323 + +1.9 613,323 + -0.2 613,323 + -0.7 613,324 - +1.0 613,324 - -1.2 613,324 - +1.0 613,324 - -2.5 613,324 - +0.7 613,324 - -1.8 613,324 - -0.1 613,324 - +0.1 613,324 - -1.8 613,324 - -1.4 613,324 - +3.1 613,324 - -1.6 613,393 + -1.7 613,393 + -0.4 613,394 - +0.6 613,394 - -0.9 613,394 - -1.3 613,394 - -1.5 613,567 + LRK54_RS02860 0.42 +1.5 613,841 + +1.3 613,841 + -0.6 613,841 + -0.7 613,842 - -0.8 613,842 - +0.2 613,935 + LRK54_RS02865 0.51 -1.8 613,936 - LRK54_RS02865 0.52 -0.7 614,013 + -1.6 614,013 + -1.5 614,013 + +0.3 614,014 - -1.4 614,014 - +0.5 614,014 - +0.9 614,014 - +1.9 614,014 - -1.9 614,014 - -1.8 614,052 + -0.4 614,052 + -1.4 614,052 + -0.4 614,052 + +0.7 614,053 - -1.3 614,053 - -2.3 614,053 - +0.9 614,053 - +0.9 614,134 + -0.1 614,134 + +0.3 614,134 + -1.7 614,134 + +0.4 614,134 + +0.5 614,135 - -1.4 614,135 - -1.6 614,135 - +0.9 614,135 - -1.5 614,135 - -0.4 614,135 - -1.1 614,164 + -0.1 614,164 + +1.5 614,164 + -1.1 614,164 + +1.9 614,164 + -0.0 614,165 - -0.4 614,165 - +1.7 614,165 - -1.5 614,165 - +1.5 614,165 - -0.1 614,165 - -1.5 614,165 - -1.5 614,223 + +0.9 614,224 - -0.3 614,364 - LRK54_RS02870 0.24 +0.5 614,364 - LRK54_RS02870 0.24 -2.1 614,364 - LRK54_RS02870 0.24 -0.5 614,433 + LRK54_RS02870 0.35 +1.0 614,433 + LRK54_RS02870 0.35 +0.9 614,433 + LRK54_RS02870 0.35 -0.6 614,433 + LRK54_RS02870 0.35 +0.5 614,433 + LRK54_RS02870 0.35 +0.9 614,433 + LRK54_RS02870 0.35 +0.4 614,433 + LRK54_RS02870 0.35 -0.3 614,433 + LRK54_RS02870 0.35 -0.8 614,434 - LRK54_RS02870 0.35 +0.3 614,434 - LRK54_RS02870 0.35 -1.4 614,434 - LRK54_RS02870 0.35 +1.1 614,529 + LRK54_RS02870 0.49 -0.4 614,529 + LRK54_RS02870 0.49 -0.5 614,529 + LRK54_RS02870 0.49 +3.9 614,529 + LRK54_RS02870 0.49 -0.8 614,529 + LRK54_RS02870 0.49 -0.1 614,529 + LRK54_RS02870 0.49 -2.7 614,529 + LRK54_RS02870 0.49 -0.8 614,529 + LRK54_RS02870 0.49 +1.0 614,529 + LRK54_RS02870 0.49 +0.4 614,530 - LRK54_RS02870 0.49 +2.0 614,530 - LRK54_RS02870 0.49 -1.3 614,558 - LRK54_RS02870 0.53 -2.1 614,721 + LRK54_RS02870 0.77 -0.3
Or see this region's nucleotide sequence