Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13510

Experiment: biofilm; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM;
3,025,316	+		LRK54_RS13505	0.38	-1.1
3,025,316	+		LRK54_RS13505	0.38	-0.1
3,025,316	+		LRK54_RS13505	0.38	-0.7
3,025,316	+		LRK54_RS13505	0.38	-0.1
3,025,316	+		LRK54_RS13505	0.38	-0.3
3,025,317	-		LRK54_RS13505	0.38	+1.9
3,025,317	-		LRK54_RS13505	0.38	-1.0
3,025,317	-		LRK54_RS13505	0.38	-1.7
3,025,317	-		LRK54_RS13505	0.38	-1.0
3,025,317	-		LRK54_RS13505	0.38	+1.3
3,025,721	+				+0.1
3,025,721	+				-0.7
3,025,766	+				+0.1
3,025,766	+				+0.7
3,025,766	+				-0.1
3,025,766	+				-0.9
3,025,767	-				+0.3
3,025,767	-				-2.3
3,025,853	+				-1.1
3,025,853	+				+0.4
3,025,853	+				-0.5
3,025,854	-				+2.9
3,026,115	+		LRK54_RS13510	0.22	-1.7
3,026,397	+		LRK54_RS13510	0.42	-2.0
3,026,397	+		LRK54_RS13510	0.42	-0.6
3,026,397	+		LRK54_RS13510	0.42	-1.4
3,026,398	-		LRK54_RS13510	0.42	-1.7
3,026,398	-		LRK54_RS13510	0.42	-0.9
3,026,559	+		LRK54_RS13510	0.54	-1.0
3,026,559	+		LRK54_RS13510	0.54	-0.4
3,026,781	+		LRK54_RS13510	0.70	-0.5
3,026,781	+		LRK54_RS13510	0.70	+0.4
3,026,781	+		LRK54_RS13510	0.70	-0.8
3,026,782	-		LRK54_RS13510	0.70	-1.4
3,026,782	-		LRK54_RS13510	0.70	-1.6
3,026,782	-		LRK54_RS13510	0.70	-1.9
3,026,782	-		LRK54_RS13510	0.70	-0.6
3,026,782	-		LRK54_RS13510	0.70	-0.7
3,026,782	-		LRK54_RS13510	0.70	+1.3
3,026,782	-		LRK54_RS13510	0.70	+0.6
3,026,782	-		LRK54_RS13510	0.70	+0.7
3,026,782	-		LRK54_RS13510	0.70	-1.1
3,026,782	-		LRK54_RS13510	0.70	+0.0
3,026,782	-		LRK54_RS13510	0.70	-1.4
3,026,782	-		LRK54_RS13510	0.70	+1.0
3,026,782	-		LRK54_RS13510	0.70	-1.7
3,026,858	+		LRK54_RS13510	0.76	-1.0
3,026,858	+		LRK54_RS13510	0.76	-0.1
3,026,859	-		LRK54_RS13510	0.76	-0.6
3,026,991	+		LRK54_RS13510	0.86	+0.3
3,026,991	+		LRK54_RS13510	0.86	+0.6
3,026,991	+		LRK54_RS13510	0.86	-1.7
3,026,991	+		LRK54_RS13510	0.86	+0.3
3,026,991	+		LRK54_RS13510	0.86	-0.5
3,026,991	+		LRK54_RS13510	0.86	+0.9
3,026,992	-		LRK54_RS13510	0.86	-0.2
3,026,992	-		LRK54_RS13510	0.86	-0.4
3,026,992	-		LRK54_RS13510	0.86	+0.2
3,027,036	+		LRK54_RS13510	0.89	-0.6
3,027,037	-		LRK54_RS13510	0.89	-0.9
3,027,329	+		LRK54_RS13515	0.35	-0.5
3,027,330	-		LRK54_RS13515	0.35	-0.2
3,027,590	+				-0.5
3,027,590	+				+0.1
3,027,591	-				-2.9
3,027,591	-				+1.2