Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17340

Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Aluminum chloride 1mM
3,790,467	+		LRK54_RS17335	0.13	+2.1
3,790,467	+		LRK54_RS17335	0.13	+0.6
3,790,467	+		LRK54_RS17335	0.13	-0.0
3,790,467	+		LRK54_RS17335	0.13	-0.2
3,790,467	+		LRK54_RS17335	0.13	+0.7
3,790,467	+		LRK54_RS17335	0.13	-0.1
3,790,467	+		LRK54_RS17335	0.13	-0.6
3,790,467	+		LRK54_RS17335	0.13	-2.4
3,790,467	+		LRK54_RS17335	0.13	-0.6
3,790,467	+		LRK54_RS17335	0.13	-0.3
3,790,467	+		LRK54_RS17335	0.13	-1.2
3,790,467	+		LRK54_RS17335	0.13	+0.4
3,790,467	+		LRK54_RS17335	0.13	-0.6
3,790,467	+		LRK54_RS17335	0.13	+1.2
3,790,468	-		LRK54_RS17335	0.14	+3.1
3,790,468	-		LRK54_RS17335	0.14	+1.4
3,790,468	-		LRK54_RS17335	0.14	-0.4
3,790,468	-		LRK54_RS17335	0.14	+1.8
3,790,468	-		LRK54_RS17335	0.14	+0.5
3,790,468	-		LRK54_RS17335	0.14	-0.9
3,790,468	-		LRK54_RS17335	0.14	+2.1
3,790,468	-		LRK54_RS17335	0.14	-0.8
3,790,468	-		LRK54_RS17335	0.14	-0.2
3,790,468	-		LRK54_RS17335	0.14	-0.6
3,790,468	-		LRK54_RS17335	0.14	-0.7
3,790,468	-		LRK54_RS17335	0.14	-0.1
3,790,681	+		LRK54_RS17335	0.73	+1.6
3,790,681	+		LRK54_RS17335	0.73	+1.4
3,790,681	+		LRK54_RS17335	0.73	-0.8
3,790,682	-		LRK54_RS17335	0.73	-0.4
3,790,782	+				-1.9
3,790,782	+				-2.4
3,790,782	+				+0.0
3,790,782	+				-0.7
3,790,782	+				-2.7
3,790,783	-				-0.5
3,790,783	-				+3.7
3,790,783	-				-1.5
3,790,783	-				+2.7
3,790,783	-				-0.7
3,790,783	-				-0.3
3,790,783	-				-1.0
3,790,783	-				-0.2
3,790,783	-				-2.2
3,790,783	-				+1.7
3,790,783	-				-0.6
3,790,910	+				-1.5
3,790,910	+				-0.2
3,790,910	+				-0.7
3,790,910	+				-0.9
3,790,911	-				+0.5
3,790,911	-				-0.4
3,790,911	-				+1.4
3,790,911	-				+1.7
3,790,911	-				+0.7
3,790,911	-				-1.1
3,791,055	+				-0.8
3,791,056	-				-2.3
3,791,074	-				-1.1
3,791,132	+				-0.2
3,791,132	+				-0.4
3,791,132	+				+0.3
3,791,132	+				-2.1
3,791,132	+				-3.6
3,791,132	+				-1.1
3,791,132	+				-0.4
3,791,132	+				-0.1
3,791,133	-				-1.6
3,791,133	-				+0.2
3,791,133	-				-0.1
3,791,133	-				-0.8
3,791,133	-				-0.9
3,791,133	-				+2.7
3,791,133	-				-2.2
3,791,133	-				-1.7
3,791,133	-				+1.1
3,791,133	-				+0.4
3,791,133	-				+1.3
3,791,133	-				-1.9
3,791,178	+				-1.0
3,791,178	+				-1.9
3,791,178	+				+0.2
3,791,178	+				+0.5
3,791,178	+				-1.1
3,791,178	+				-1.3
3,791,178	+				-1.8
3,791,178	+				-0.1
3,791,178	+				+1.9
3,791,178	+				-0.4
3,791,178	+				+0.4
3,791,178	+				+0.2
3,791,178	+				-1.3
3,791,178	+				-2.4
3,791,178	+				+0.1
3,791,178	+				+0.4
3,791,178	+				-1.8
3,791,178	+				-0.3
3,791,178	+				+0.2
3,791,178	+				-1.4
3,791,178	+				-2.1
3,791,178	+				-0.6
3,791,178	+				-0.4
3,791,179	-				-0.7
3,791,179	-				-2.9
3,791,179	-				+2.1
3,791,179	-				+1.9
3,791,179	-				+2.6
3,791,179	-				+0.2
3,791,179	-				+0.9
3,791,179	-				+0.8
3,791,179	-				+1.1
3,791,179	-				+1.8
3,791,179	-				-2.2
3,791,179	-				+2.4
3,791,179	-				-0.6
3,791,300	+				+0.4
3,791,300	+				+0.5
3,791,300	+				+0.9
3,791,300	+				+0.2
3,791,300	+				+0.0
3,791,300	+				-0.8
3,791,300	+				-0.6
3,791,300	+				-1.2
3,791,300	+				+0.5
3,791,300	+				-2.3
3,791,300	+				-1.5
3,791,300	+				-2.1
3,791,300	+				-0.2
3,791,300	+				-3.1
3,791,300	+				+1.3
3,791,300	+				+0.5
3,791,300	+				-0.8
3,791,300	+				-0.4
3,791,300	+				-2.6
3,791,300	+				+1.1
3,791,300	+				+1.1
3,791,301	-				-1.5
3,791,301	-				-0.5
3,791,301	-				-2.3
3,791,301	-				-1.7
3,791,301	-				+1.4
3,791,301	-				-0.4
3,791,301	-				-2.9
3,791,301	-				+3.7
3,791,301	-				-0.2
3,791,301	-				-2.1
3,791,301	-				-0.9
3,791,301	-				+0.1
3,791,301	-				-2.7
3,791,301	-				+0.2
3,791,301	-				+2.7
3,791,301	-				-1.6
3,791,301	-				-1.9
3,791,301	-				-0.0
3,791,301	-				-1.1
3,791,301	-				+0.2
3,791,301	-				-1.3
3,791,337	-		LRK54_RS17345	0.21	-0.9
3,791,393	+		LRK54_RS17345	0.51	-1.8
3,791,426	+		LRK54_RS17345	0.69	-0.1
3,791,427	-		LRK54_RS17345	0.70	+0.4
3,791,427	-		LRK54_RS17345	0.70	-2.0
3,791,444	+		LRK54_RS17345	0.79	-0.6
3,791,444	+		LRK54_RS17345	0.79	-1.3
3,791,444	+		LRK54_RS17345	0.79	-2.8
3,791,444	+		LRK54_RS17345	0.79	+1.3
3,791,444	+		LRK54_RS17345	0.79	+1.4
3,791,444	+		LRK54_RS17345	0.79	-0.8
3,791,444	+		LRK54_RS17345	0.79	-1.4
3,791,444	+		LRK54_RS17345	0.79	-0.6
3,791,444	+		LRK54_RS17345	0.79	-0.3
3,791,444	+		LRK54_RS17345	0.79	+0.9
3,791,444	+		LRK54_RS17345	0.79	-1.1
3,791,444	+		LRK54_RS17345	0.79	-0.3
3,791,444	+		LRK54_RS17345	0.79	-1.3
3,791,445	-		LRK54_RS17345	0.80	-0.9
3,791,445	-		LRK54_RS17345	0.80	-0.3
3,791,445	-		LRK54_RS17345	0.80	+1.5
3,791,445	-		LRK54_RS17345	0.80	-3.2
3,791,445	-		LRK54_RS17345	0.80	+0.4
3,791,445	-		LRK54_RS17345	0.80	-1.2
3,791,445	-		LRK54_RS17345	0.80	+2.4
3,791,455	+		LRK54_RS17345	0.85	+0.2
3,791,455	+		LRK54_RS17345	0.85	-0.8
3,791,455	+		LRK54_RS17345	0.85	+1.4
3,791,455	+		LRK54_RS17345	0.85	-2.8
3,791,455	+		LRK54_RS17345	0.85	-0.3
3,791,455	+		LRK54_RS17345	0.85	+2.0
3,791,456	-		LRK54_RS17345	0.86	-1.9
3,791,456	-		LRK54_RS17345	0.86	-3.1
3,791,456	-		LRK54_RS17345	0.86	-1.3
3,791,456	-		LRK54_RS17345	0.86	+0.8
3,791,456	-		LRK54_RS17345	0.86	-0.1
3,791,456	-		LRK54_RS17345	0.86	+0.7
3,791,456	-		LRK54_RS17345	0.86	+0.1
3,791,456	-		LRK54_RS17345	0.86	-1.4
3,791,456	-		LRK54_RS17345	0.86	+0.1
3,791,456	-		LRK54_RS17345	0.86	+0.8
3,791,456	-		LRK54_RS17345	0.86	+0.1
3,791,456	-		LRK54_RS17345	0.86	-0.0
3,791,768	+				-2.6
3,791,768	+				-2.5
3,791,768	+				-2.3
3,791,768	+				+2.2
3,791,769	-				+1.7
3,791,769	-				-0.4
3,791,769	-				+0.5
3,791,769	-				+3.7
3,791,960	+				+0.4