Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15620

Experiment: planktonic; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM;
3,445,482	+				-2.8
3,445,483	-				+0.4
3,445,533	+				+1.6
3,445,533	+				-0.7
3,445,533	+				+0.3
3,445,534	-				-0.4
3,445,534	-				-0.6
3,445,534	-				+0.8
3,445,579	+				-0.2
3,445,579	+				+0.1
3,445,579	+				-0.3
3,445,579	+				+1.3
3,445,579	+				-0.9
3,445,579	+				-1.2
3,445,579	+				+0.9
3,445,579	+				+0.4
3,445,580	-				-0.3
3,445,580	-				-0.9
3,445,580	-				-0.6
3,445,580	-				-0.5
3,445,580	-				-0.2
3,445,580	-				+0.4
3,445,699	+		LRK54_RS15615	0.23	-0.2
3,445,699	+		LRK54_RS15615	0.23	-1.8
3,445,699	+		LRK54_RS15615	0.23	-0.3
3,445,699	+		LRK54_RS15615	0.23	-0.8
3,445,699	+		LRK54_RS15615	0.23	-0.2
3,445,700	-		LRK54_RS15615	0.23	+0.9
3,445,700	-		LRK54_RS15615	0.23	+0.4
3,445,700	-		LRK54_RS15615	0.23	+0.0
3,445,700	-		LRK54_RS15615	0.23	+0.0
3,445,700	-		LRK54_RS15615	0.23	-0.4
3,445,700	-		LRK54_RS15615	0.23	-0.1
3,445,700	-		LRK54_RS15615	0.23	-0.4
3,445,700	-		LRK54_RS15615	0.23	-0.4
3,445,700	-		LRK54_RS15615	0.23	-0.2
3,445,700	-		LRK54_RS15615	0.23	+0.8
3,445,792	+		LRK54_RS15615	0.37	-0.6
3,445,792	+		LRK54_RS15615	0.37	-1.2
3,445,793	-		LRK54_RS15615	0.37	-0.5
3,445,831	+		LRK54_RS15615	0.43	-1.6
3,445,897	+		LRK54_RS15615	0.53	-0.3
3,445,897	+		LRK54_RS15615	0.53	-1.0
3,445,897	+		LRK54_RS15615	0.53	-0.3
3,445,897	+		LRK54_RS15615	0.53	+0.7
3,445,897	+		LRK54_RS15615	0.53	+0.9
3,445,897	+		LRK54_RS15615	0.53	-0.3
3,445,897	+		LRK54_RS15615	0.53	+0.3
3,445,897	+		LRK54_RS15615	0.53	+0.2
3,445,897	+		LRK54_RS15615	0.53	-0.7
3,445,897	+		LRK54_RS15615	0.53	-1.6
3,445,897	+		LRK54_RS15615	0.53	+0.6
3,445,897	+		LRK54_RS15615	0.53	-0.3
3,445,897	+		LRK54_RS15615	0.53	-0.3
3,445,897	+		LRK54_RS15615	0.53	-0.6
3,445,897	+		LRK54_RS15615	0.53	-0.4
3,445,897	+		LRK54_RS15615	0.53	-0.5
3,445,897	+		LRK54_RS15615	0.53	+1.2
3,445,897	+		LRK54_RS15615	0.53	+1.0
3,445,897	+		LRK54_RS15615	0.53	-0.6
3,445,897	+		LRK54_RS15615	0.53	-0.7
3,445,897	+		LRK54_RS15615	0.53	+2.0
3,445,897	+		LRK54_RS15615	0.53	+1.2
3,445,898	-		LRK54_RS15615	0.53	-0.7
3,445,898	-		LRK54_RS15615	0.53	-1.4
3,445,898	-		LRK54_RS15615	0.53	-0.4
3,445,898	-		LRK54_RS15615	0.53	+2.4
3,445,898	-		LRK54_RS15615	0.53	-0.3
3,445,898	-		LRK54_RS15615	0.53	-0.7
3,445,898	-		LRK54_RS15615	0.53	+0.7
3,445,898	-		LRK54_RS15615	0.53	-0.1
3,445,898	-		LRK54_RS15615	0.53	+0.2
3,445,898	-		LRK54_RS15615	0.53	+0.3
3,445,898	-		LRK54_RS15615	0.53	-2.3
3,445,898	-		LRK54_RS15615	0.53	-0.9
3,445,898	-		LRK54_RS15615	0.53	-0.0
3,445,898	-		LRK54_RS15615	0.53	-1.8
3,445,898	-		LRK54_RS15615	0.53	-1.2
3,445,993	+		LRK54_RS15615	0.67	-2.4
3,445,993	+		LRK54_RS15615	0.67	-0.7
3,445,994	-		LRK54_RS15615	0.68	+0.0
3,445,994	-		LRK54_RS15615	0.68	+0.3
3,445,994	-		LRK54_RS15615	0.68	-0.7
3,445,994	-		LRK54_RS15615	0.68	-0.8
3,445,994	-		LRK54_RS15615	0.68	-2.2
3,445,994	-		LRK54_RS15615	0.68	-1.6
3,445,994	-		LRK54_RS15615	0.68	-0.7
3,446,143	+				+0.5
3,446,143	+				-0.7
3,446,144	-				+1.4
3,446,144	-				-0.2
3,446,144	-				+1.6
3,446,144	-				+0.3
3,446,144	-				-0.4
3,446,170	+				-0.6
3,446,170	+				-0.6
3,446,170	+				+1.8
3,446,170	+				-0.9
3,446,170	+				-0.7
3,446,171	-				-2.2
3,446,171	-				+0.8
3,446,171	-				-1.0
3,446,171	-				-2.2
3,446,171	-				-1.0
3,446,171	-				-0.1
3,446,171	-				-1.3
3,446,171	-				-1.3
3,446,191	+				+0.5
3,446,191	+				-0.8
3,446,191	+				-0.3
3,446,191	+				-0.8
3,446,192	-				-0.5
3,446,192	-				+0.8
3,446,192	-				+0.0
3,446,192	-				-1.4
3,446,192	-				-1.2
3,446,382	+				+0.8
3,446,382	+				-0.1
3,446,382	+				-0.0
3,446,382	+				-0.7
3,446,493	-		LRK54_RS15620	0.51	-0.4
3,446,570	+		LRK54_RS15620	0.83	-0.6
3,446,570	+		LRK54_RS15620	0.83	+0.3
3,446,570	+		LRK54_RS15620	0.83	+0.6
3,446,570	+		LRK54_RS15620	0.83	+0.5
3,446,570	+		LRK54_RS15620	0.83	-1.6
3,446,570	+		LRK54_RS15620	0.83	+3.6
3,446,570	+		LRK54_RS15620	0.83	+0.4
3,446,571	-		LRK54_RS15620	0.83	+0.6
3,446,571	-		LRK54_RS15620	0.83	+0.3
3,446,571	-		LRK54_RS15620	0.83	-0.5
3,446,571	-		LRK54_RS15620	0.83	+0.0
3,446,571	-		LRK54_RS15620	0.83	-1.2
3,446,571	-		LRK54_RS15620	0.83	-1.8
3,446,571	-		LRK54_RS15620	0.83	+0.2
3,446,947	+		LRK54_RS15625	0.20	+2.6
3,446,947	+		LRK54_RS15625	0.20	-2.2
3,446,947	+		LRK54_RS15625	0.20	+0.5
3,446,948	-		LRK54_RS15625	0.20	-1.3
3,446,948	-		LRK54_RS15625	0.20	+0.1
3,446,948	-		LRK54_RS15625	0.20	-0.3
3,446,948	-		LRK54_RS15625	0.20	+0.8
3,447,051	+		LRK54_RS15625	0.28	+2.5
3,447,051	+		LRK54_RS15625	0.28	+0.7
3,447,052	-		LRK54_RS15625	0.28	+1.0
3,447,052	-		LRK54_RS15625	0.28	+0.7
3,447,052	-		LRK54_RS15625	0.28	+0.5
3,447,504	+		LRK54_RS15625	0.65	-2.2
3,447,522	+		LRK54_RS15625	0.67	-0.0
3,447,522	+		LRK54_RS15625	0.67	+0.1
3,447,523	-		LRK54_RS15625	0.67	+0.8