Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13460

Experiment: planktonic; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM;
3,014,744	+		LRK54_RS13455	0.33	-1.5
3,014,744	+		LRK54_RS13455	0.33	-0.7
3,014,745	-		LRK54_RS13455	0.33	-0.8
3,014,745	-		LRK54_RS13455	0.33	-1.6
3,014,804	+		LRK54_RS13455	0.38	-1.0
3,014,804	+		LRK54_RS13455	0.38	+1.1
3,014,804	+		LRK54_RS13455	0.38	-0.1
3,014,804	+		LRK54_RS13455	0.38	-0.8
3,014,804	+		LRK54_RS13455	0.38	+0.6
3,014,804	+		LRK54_RS13455	0.38	+1.1
3,014,805	-		LRK54_RS13455	0.38	-0.2
3,014,805	-		LRK54_RS13455	0.38	-0.5
3,014,805	-		LRK54_RS13455	0.38	-0.1
3,015,017	+		LRK54_RS13455	0.56	-1.1
3,015,018	-		LRK54_RS13455	0.56	+0.4
3,015,018	-		LRK54_RS13455	0.56	-0.6
3,015,047	+		LRK54_RS13455	0.58	+0.6
3,015,047	+		LRK54_RS13455	0.58	-1.2
3,015,047	+		LRK54_RS13455	0.58	-0.8
3,015,047	+		LRK54_RS13455	0.58	+1.0
3,015,047	+		LRK54_RS13455	0.58	+2.0
3,015,048	-		LRK54_RS13455	0.58	-2.2
3,015,048	-		LRK54_RS13455	0.58	-0.8
3,015,048	-		LRK54_RS13455	0.58	-0.6
3,015,048	-		LRK54_RS13455	0.58	+0.5
3,015,048	-		LRK54_RS13455	0.58	-2.2
3,015,092	+		LRK54_RS13455	0.62	-1.4
3,015,092	+		LRK54_RS13455	0.62	-0.2
3,015,092	+		LRK54_RS13455	0.62	-1.5
3,015,092	+		LRK54_RS13455	0.62	-0.9
3,015,093	-		LRK54_RS13455	0.62	+1.6
3,015,093	-		LRK54_RS13455	0.62	-0.7
3,015,093	-		LRK54_RS13455	0.62	-0.9
3,015,093	-		LRK54_RS13455	0.62	+0.8
3,015,093	-		LRK54_RS13455	0.62	+1.7
3,015,093	-		LRK54_RS13455	0.62	-0.7
3,015,138	+		LRK54_RS13455	0.66	+0.6
3,015,138	+		LRK54_RS13455	0.66	+3.0
3,015,138	+		LRK54_RS13455	0.66	+0.2
3,015,139	-		LRK54_RS13455	0.66	-1.6
3,015,404	+		LRK54_RS13455	0.88	-1.2
3,015,404	+		LRK54_RS13455	0.88	-0.3
3,015,404	+		LRK54_RS13455	0.88	+0.2
3,015,404	+		LRK54_RS13455	0.88	-0.2
3,015,404	+		LRK54_RS13455	0.88	+0.3
3,015,405	-		LRK54_RS13455	0.88	-1.5
3,015,405	-		LRK54_RS13455	0.88	+0.7
3,015,405	-		LRK54_RS13455	0.88	-0.2
3,015,405	-		LRK54_RS13455	0.88	+1.6
3,015,405	-		LRK54_RS13455	0.88	-1.0
3,015,405	-		LRK54_RS13455	0.88	-1.8
3,015,440	+				-1.0
3,015,440	+				-1.0
3,015,440	+				+0.4
3,015,441	-				+2.0
3,015,441	-				+0.5
3,015,441	-				-1.4
3,015,441	-				-2.5
3,015,441	-				-0.9
3,015,441	-				-0.4
3,015,441	-				+0.8
3,015,441	-				-1.0
3,015,441	-				+0.2
3,015,443	+				-0.4
3,015,443	+				-0.0
3,015,443	+				+0.9
3,015,443	+				+0.6
3,015,443	+				-1.1
3,015,444	-				-1.2
3,015,444	-				-0.4
3,015,444	-				-1.4
3,015,444	-				-0.7
3,015,536	+				-0.2
3,015,646	+				-1.3
3,015,646	+				+0.4
3,015,646	+				-0.2
3,015,646	+				-1.6
3,015,646	+				+0.1
3,015,646	+				-0.0
3,015,646	+				+0.3
3,015,646	+				-0.7
3,015,646	+				-2.0
3,015,646	+				-0.3
3,015,647	-				-0.1
3,015,647	-				-0.1
3,015,647	-				+0.9
3,015,647	-				-1.6
3,015,647	-				+0.2
3,015,647	-				-1.4
3,015,647	-				-0.2
3,015,647	-				-0.8
3,015,647	-				-0.5
3,015,647	-				-1.9
3,015,647	-				-0.8
3,015,647	-				+0.1
3,015,647	-				-0.3
3,015,647	-				-0.9
3,015,664	+				+0.8
3,015,664	+				+0.3
3,015,664	+				-0.0
3,015,664	+				+0.1
3,015,664	+				-1.0
3,015,664	+				-0.6
3,015,665	-				+0.3
3,015,665	-				-0.9
3,015,665	-				-0.5
3,015,665	-				+0.4
3,016,337	+		LRK54_RS13460	0.46	-0.3
3,016,337	+		LRK54_RS13460	0.46	-0.5
3,016,338	-		LRK54_RS13460	0.46	-1.2
3,016,338	-		LRK54_RS13460	0.46	-0.1
3,016,338	-		LRK54_RS13460	0.46	+1.1
3,016,338	-		LRK54_RS13460	0.46	+0.4
3,016,338	-		LRK54_RS13460	0.46	+1.6
3,016,338	-		LRK54_RS13460	0.46	+1.4
3,016,338	-		LRK54_RS13460	0.46	+0.4
3,016,338	-		LRK54_RS13460	0.46	-0.1
3,016,338	-		LRK54_RS13460	0.46	-1.4
3,016,338	-		LRK54_RS13460	0.46	-0.4
3,016,481	+		LRK54_RS13460	0.56	+1.0
3,016,481	+		LRK54_RS13460	0.56	-0.6
3,016,481	+		LRK54_RS13460	0.56	-0.2
3,016,481	+		LRK54_RS13460	0.56	+2.0
3,016,481	+		LRK54_RS13460	0.56	-0.8
3,016,481	+		LRK54_RS13460	0.56	+0.2
3,016,481	+		LRK54_RS13460	0.56	-0.0
3,016,481	+		LRK54_RS13460	0.56	-1.3
3,016,481	+		LRK54_RS13460	0.56	+1.6
3,016,481	+		LRK54_RS13460	0.56	+0.5
3,016,482	-		LRK54_RS13460	0.56	-1.8
3,016,482	-		LRK54_RS13460	0.56	-1.0
3,016,482	-		LRK54_RS13460	0.56	+0.2
3,016,482	-		LRK54_RS13460	0.56	+0.2
3,016,482	-		LRK54_RS13460	0.56	+1.0
3,016,482	-		LRK54_RS13460	0.56	+0.9
3,016,482	-		LRK54_RS13460	0.56	-1.1
3,016,482	-		LRK54_RS13460	0.56	+0.4
3,016,482	-		LRK54_RS13460	0.56	-0.5
3,016,604	+		LRK54_RS13460	0.65	+0.1
3,016,604	+		LRK54_RS13460	0.65	+0.1
3,016,604	+		LRK54_RS13460	0.65	+0.3
3,016,604	+		LRK54_RS13460	0.65	-0.3
3,016,604	+		LRK54_RS13460	0.65	-0.9
3,016,604	+		LRK54_RS13460	0.65	+1.2
3,016,604	+		LRK54_RS13460	0.65	-1.5
3,016,604	+		LRK54_RS13460	0.65	-0.5
3,016,604	+		LRK54_RS13460	0.65	-0.9
3,016,604	+		LRK54_RS13460	0.65	-0.2
3,016,605	-		LRK54_RS13460	0.65	-0.8
3,016,605	-		LRK54_RS13460	0.65	-1.7
3,016,605	-		LRK54_RS13460	0.65	-0.1
3,016,605	-		LRK54_RS13460	0.65	-1.5
3,016,605	-		LRK54_RS13460	0.65	-1.4
3,016,605	-		LRK54_RS13460	0.65	+0.4
3,016,605	-		LRK54_RS13460	0.65	-2.0
3,016,605	-		LRK54_RS13460	0.65	-0.6
3,016,667	+		LRK54_RS13460	0.69	-0.3
3,016,667	+		LRK54_RS13460	0.69	-0.8
3,016,668	-		LRK54_RS13460	0.69	+2.4
3,016,668	-		LRK54_RS13460	0.69	-0.7
3,016,668	-		LRK54_RS13460	0.69	-1.1
3,016,670	+		LRK54_RS13460	0.69	+0.2
3,016,670	+		LRK54_RS13460	0.69	-1.1
3,016,670	+		LRK54_RS13460	0.69	-0.1
3,016,670	+		LRK54_RS13460	0.69	-0.9
3,016,671	-		LRK54_RS13460	0.69	+0.1
3,016,671	-		LRK54_RS13460	0.69	-0.3
3,016,671	-		LRK54_RS13460	0.69	-0.3
3,016,671	-		LRK54_RS13460	0.69	+1.1
3,016,671	-		LRK54_RS13460	0.69	-0.3
3,016,671	-		LRK54_RS13460	0.69	+1.0
3,016,671	-		LRK54_RS13460	0.69	+0.9
3,016,671	-		LRK54_RS13460	0.69	+1.4
3,017,111	+				-0.6
3,017,119	+				-0.5
3,017,120	-				-0.3
3,017,120	-				-0.5
3,017,120	-				+0.1
3,017,120	-				-1.3
3,017,192	+				+0.3
3,017,192	+				-0.7
3,017,439	-		LRK54_RS13465	0.19	-0.7
3,017,500	+		LRK54_RS13465	0.23	+0.5
3,017,500	+		LRK54_RS13465	0.23	+2.6
3,017,500	+		LRK54_RS13465	0.23	-1.4
3,017,500	+		LRK54_RS13465	0.23	-1.8
3,017,500	+		LRK54_RS13465	0.23	-3.2
3,017,500	+		LRK54_RS13465	0.23	+0.4
3,017,500	+		LRK54_RS13465	0.23	+2.4
3,017,500	+		LRK54_RS13465	0.23	-0.9
3,017,500	+		LRK54_RS13465	0.23	-0.9
3,017,500	+		LRK54_RS13465	0.23	-1.0
3,017,500	+		LRK54_RS13465	0.23	-1.8
3,017,501	-		LRK54_RS13465	0.23	+0.2
3,017,501	-		LRK54_RS13465	0.23	-2.4
3,017,501	-		LRK54_RS13465	0.23	-0.7
3,017,501	-		LRK54_RS13465	0.23	-0.0
3,017,501	-		LRK54_RS13465	0.23	+0.6
3,017,501	-		LRK54_RS13465	0.23	-0.6
3,017,501	-		LRK54_RS13465	0.23	+0.1
3,017,501	-		LRK54_RS13465	0.23	-1.5
3,017,501	-		LRK54_RS13465	0.23	-0.1
3,017,501	-		LRK54_RS13465	0.23	+1.2
3,017,501	-		LRK54_RS13465	0.23	-0.9
3,017,501	-		LRK54_RS13465	0.23	-0.0
3,017,501	-		LRK54_RS13465	0.23	-1.8
3,017,824	+		LRK54_RS13465	0.46	+1.5
3,017,824	+		LRK54_RS13465	0.46	+1.7
3,017,824	+		LRK54_RS13465	0.46	-0.7
3,017,824	+		LRK54_RS13465	0.46	-0.9
3,017,824	+		LRK54_RS13465	0.46	-0.7
3,017,825	-		LRK54_RS13465	0.46	-0.2
3,017,825	-		LRK54_RS13465	0.46	+0.4
3,017,825	-		LRK54_RS13465	0.46	-0.5
3,017,825	-		LRK54_RS13465	0.46	+0.9
3,017,825	-		LRK54_RS13465	0.46	+0.7
3,017,825	-		LRK54_RS13465	0.46	+1.0
3,017,887	+		LRK54_RS13465	0.51	+0.6
3,017,887	+		LRK54_RS13465	0.51	-1.1
3,017,887	+		LRK54_RS13465	0.51	+2.0
3,017,887	+		LRK54_RS13465	0.51	+1.0
3,017,887	+		LRK54_RS13465	0.51	-0.5
3,017,887	+		LRK54_RS13465	0.51	-0.1
3,017,887	+		LRK54_RS13465	0.51	-0.5
3,017,887	+		LRK54_RS13465	0.51	-0.2
3,017,887	+		LRK54_RS13465	0.51	-1.1
3,017,887	+		LRK54_RS13465	0.51	-0.7
3,017,887	+		LRK54_RS13465	0.51	-1.1
3,017,887	+		LRK54_RS13465	0.51	-1.4
3,017,888	-		LRK54_RS13465	0.51	-0.9
3,017,888	-		LRK54_RS13465	0.51	-0.2
3,017,888	-		LRK54_RS13465	0.51	-1.9
3,017,888	-		LRK54_RS13465	0.51	-0.7
3,017,888	-		LRK54_RS13465	0.51	-0.6
3,017,888	-		LRK54_RS13465	0.51	-0.2
3,017,888	-		LRK54_RS13465	0.51	-1.1
3,017,888	-		LRK54_RS13465	0.51	-0.9
3,017,888	-		LRK54_RS13465	0.51	+0.2
3,017,926	-		LRK54_RS13465	0.54	-0.2
3,017,926	-		LRK54_RS13465	0.54	+0.2
3,017,926	-		LRK54_RS13465	0.54	+0.3
3,017,926	-		LRK54_RS13465	0.54	-1.6
3,018,046	+		LRK54_RS13465	0.62	+1.4
3,018,046	+		LRK54_RS13465	0.62	-0.6
3,018,046	+		LRK54_RS13465	0.62	-1.1
3,018,046	+		LRK54_RS13465	0.62	-1.0
3,018,046	+		LRK54_RS13465	0.62	+1.0
3,018,046	+		LRK54_RS13465	0.62	-1.3
3,018,046	+		LRK54_RS13465	0.62	-1.0
3,018,046	+		LRK54_RS13465	0.62	+0.8
3,018,047	-		LRK54_RS13465	0.62	-0.3
3,018,047	-		LRK54_RS13465	0.62	+0.4
3,018,047	-		LRK54_RS13465	0.62	-0.4
3,018,047	-		LRK54_RS13465	0.62	+0.0
3,018,047	-		LRK54_RS13465	0.62	+1.0
3,018,067	+		LRK54_RS13465	0.64	-0.3
3,018,067	+		LRK54_RS13465	0.64	-2.3
3,018,067	+		LRK54_RS13465	0.64	+1.3
3,018,067	+		LRK54_RS13465	0.64	-1.7
3,018,067	+		LRK54_RS13465	0.64	-0.1
3,018,068	-		LRK54_RS13465	0.64	+0.3
3,018,068	-		LRK54_RS13465	0.64	-1.5
3,018,068	-		LRK54_RS13465	0.64	-0.9
3,018,068	-		LRK54_RS13465	0.64	-1.0
3,018,068	-		LRK54_RS13465	0.64	-0.4
3,018,085	+		LRK54_RS13465	0.65	-1.3
3,018,086	-		LRK54_RS13465	0.65	-1.8
3,018,086	-		LRK54_RS13465	0.65	-2.0
3,018,086	-		LRK54_RS13465	0.65	+2.0
3,018,086	-		LRK54_RS13465	0.65	-1.5
3,018,086	-		LRK54_RS13465	0.65	-0.1