Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05470

Experiment: planktonic; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM;
1,179,112	+		LRK54_RS05465	0.41	-1.0
1,179,112	+		LRK54_RS05465	0.41	+0.3
1,179,113	-		LRK54_RS05465	0.41	-0.3
1,179,113	-		LRK54_RS05465	0.41	-1.2
1,179,113	-		LRK54_RS05465	0.41	-0.8
1,179,113	-		LRK54_RS05465	0.41	+0.4
1,179,113	-		LRK54_RS05465	0.41	-1.2
1,179,157	+		LRK54_RS05465	0.44	-0.8
1,179,157	+		LRK54_RS05465	0.44	-0.1
1,179,157	+		LRK54_RS05465	0.44	+0.1
1,179,157	+		LRK54_RS05465	0.44	+0.8
1,179,157	+		LRK54_RS05465	0.44	+1.8
1,179,157	+		LRK54_RS05465	0.44	-0.1
1,179,157	+		LRK54_RS05465	0.44	+0.6
1,179,157	+		LRK54_RS05465	0.44	-1.0
1,179,157	+		LRK54_RS05465	0.44	-1.2
1,179,158	-		LRK54_RS05465	0.45	+2.0
1,179,158	-		LRK54_RS05465	0.45	+0.2
1,179,158	-		LRK54_RS05465	0.45	+0.1
1,179,158	-		LRK54_RS05465	0.45	-0.5
1,179,158	-		LRK54_RS05465	0.45	+0.5
1,179,158	-		LRK54_RS05465	0.45	+1.4
1,179,158	-		LRK54_RS05465	0.45	+0.3
1,179,158	-		LRK54_RS05465	0.45	-0.4
1,179,158	-		LRK54_RS05465	0.45	-0.9
1,179,158	-		LRK54_RS05465	0.45	+1.6
1,179,158	-		LRK54_RS05465	0.45	-0.6
1,179,158	-		LRK54_RS05465	0.45	+1.1
1,179,158	-		LRK54_RS05465	0.45	+0.2
1,179,158	-		LRK54_RS05465	0.45	+0.2
1,179,175	+		LRK54_RS05465	0.46	-0.5
1,179,175	+		LRK54_RS05465	0.46	-0.7
1,179,175	+		LRK54_RS05465	0.46	-0.2
1,179,175	+		LRK54_RS05465	0.46	-0.7
1,179,175	+		LRK54_RS05465	0.46	-1.0
1,179,176	-		LRK54_RS05465	0.46	-1.0
1,179,176	-		LRK54_RS05465	0.46	-0.0
1,179,176	-		LRK54_RS05465	0.46	+3.0
1,179,223	+		LRK54_RS05465	0.50	+2.0
1,179,223	+		LRK54_RS05465	0.50	+0.5
1,179,223	+		LRK54_RS05465	0.50	+1.2
1,179,223	+		LRK54_RS05465	0.50	-0.5
1,179,223	+		LRK54_RS05465	0.50	-0.9
1,179,223	+		LRK54_RS05465	0.50	-1.2
1,179,223	+		LRK54_RS05465	0.50	+0.2
1,179,223	+		LRK54_RS05465	0.50	+0.0
1,179,223	+		LRK54_RS05465	0.50	-1.0
1,179,223	+		LRK54_RS05465	0.50	+0.1
1,179,223	+		LRK54_RS05465	0.50	-1.4
1,179,223	+		LRK54_RS05465	0.50	-0.1
1,179,223	+		LRK54_RS05465	0.50	+0.3
1,179,223	+		LRK54_RS05465	0.50	-0.5
1,179,223	+		LRK54_RS05465	0.50	+2.0
1,179,223	+		LRK54_RS05465	0.50	-0.1
1,179,223	+		LRK54_RS05465	0.50	+0.2
1,179,223	+		LRK54_RS05465	0.50	+1.1
1,179,223	+		LRK54_RS05465	0.50	-0.2
1,179,224	-		LRK54_RS05465	0.50	+1.4
1,179,224	-		LRK54_RS05465	0.50	-1.8
1,179,224	-		LRK54_RS05465	0.50	+0.4
1,179,224	-		LRK54_RS05465	0.50	-1.0
1,179,224	-		LRK54_RS05465	0.50	+0.2
1,179,224	-		LRK54_RS05465	0.50	-1.0
1,179,224	-		LRK54_RS05465	0.50	-0.2
1,179,224	-		LRK54_RS05465	0.50	-0.6
1,179,224	-		LRK54_RS05465	0.50	-1.5
1,179,224	-		LRK54_RS05465	0.50	+2.0
1,179,224	-		LRK54_RS05465	0.50	-0.1
1,179,224	-		LRK54_RS05465	0.50	+0.7
1,179,224	-		LRK54_RS05465	0.50	-0.3
1,179,224	-		LRK54_RS05465	0.50	+0.1
1,179,224	-		LRK54_RS05465	0.50	-0.7
1,179,224	-		LRK54_RS05465	0.50	-0.5
1,179,655	+		LRK54_RS05465	0.84	+0.4
1,179,655	+		LRK54_RS05465	0.84	+0.3
1,179,655	+		LRK54_RS05465	0.84	-2.4
1,179,655	+		LRK54_RS05465	0.84	-1.3
1,179,655	+		LRK54_RS05465	0.84	-1.5
1,179,655	+		LRK54_RS05465	0.84	-0.9
1,179,655	+		LRK54_RS05465	0.84	-0.1
1,179,655	+		LRK54_RS05465	0.84	-0.4
1,179,655	+		LRK54_RS05465	0.84	+1.6
1,179,655	+		LRK54_RS05465	0.84	+0.6
1,179,655	+		LRK54_RS05465	0.84	-0.5
1,179,656	-		LRK54_RS05465	0.84	-0.8
1,179,656	-		LRK54_RS05465	0.84	-0.6
1,179,656	-		LRK54_RS05465	0.84	+2.0
1,179,656	-		LRK54_RS05465	0.84	-0.6
1,179,656	-		LRK54_RS05465	0.84	-0.0
1,179,656	-		LRK54_RS05465	0.84	+0.0
1,179,748	+				-0.7
1,179,749	-				-0.5
1,179,749	-				-0.3
1,179,814	+				-2.6
1,179,814	+				-0.5
1,179,814	+				+0.4
1,179,814	+				-1.4
1,179,814	+				-0.4
1,179,814	+				+0.4
1,179,814	+				-2.2
1,179,814	+				-1.0
1,179,814	+				+0.5
1,179,814	+				+0.0
1,179,814	+				-0.4
1,179,814	+				+1.1
1,179,814	+				-1.6
1,179,814	+				-0.0
1,179,814	+				+3.0
1,179,814	+				+0.9
1,179,814	+				-0.4
1,179,814	+				-0.0
1,179,814	+				-0.2
1,179,814	+				+0.9
1,179,815	-				+0.4
1,179,815	-				-0.7
1,179,815	-				-0.6
1,179,815	-				-0.4
1,179,815	-				-0.0
1,179,815	-				-3.1
1,179,815	-				+0.9
1,179,815	-				+0.4
1,179,815	-				-1.1
1,179,815	-				+2.0
1,179,815	-				-0.8
1,179,815	-				-0.3
1,179,815	-				-2.0
1,179,815	-				+0.2
1,179,815	-				+1.4
1,179,815	-				-2.1
1,179,815	-				+1.0
1,179,815	-				-2.0
1,179,815	-				-2.1
1,179,815	-				-2.7
1,179,815	-				-1.6
1,179,817	+				-1.3
1,179,817	+				-0.7
1,179,817	+				-0.1
1,179,817	+				-1.0
1,179,817	+				+0.2
1,179,817	+				+0.8
1,179,817	+				+0.3
1,179,817	+				-0.1
1,179,817	+				-0.2
1,179,817	+				+1.1
1,179,817	+				+0.3
1,179,817	+				-1.1
1,179,817	+				-0.8
1,179,818	-				+0.6
1,179,818	-				-1.6
1,179,818	-				+1.1
1,179,818	-				-0.9
1,179,818	-				+0.1
1,179,818	-				-1.0
1,179,818	-				-0.1
1,179,818	-				-0.2
1,179,818	-				-0.5
1,179,818	-				-1.3
1,179,818	-				-2.2
1,179,818	-				-1.5
1,179,818	-				-0.0
1,179,818	-				-2.0
1,179,818	-				-0.3
1,179,818	-				-1.1
1,179,818	-				-0.0
1,179,818	-				+0.4
1,179,906	+				+1.6
1,179,906	+				-0.4
1,179,906	+				-0.9
1,179,906	+				-0.6
1,179,906	+				-1.4
1,179,906	+				-1.3
1,179,906	+				-0.4
1,179,906	+				+1.5
1,179,906	+				-0.4
1,179,907	-				+0.2
1,179,907	-				-1.3
1,179,907	-				-1.1
1,179,907	-				-1.5
1,179,907	-				+0.7
1,179,907	-				-2.7
1,179,907	-				-0.7
1,179,907	-				+1.7
1,179,907	-				+0.5
1,179,933	+				+0.2
1,179,933	+				+0.2
1,179,933	+				-0.7
1,179,933	+				+0.3
1,179,933	+				-0.2
1,179,933	+				-0.2
1,179,933	+				-0.0
1,179,934	-				+1.5
1,179,934	-				-0.5
1,179,934	-				+0.1
1,179,934	-				-0.7
1,179,934	-				-0.4
1,179,934	-				-0.9
1,179,934	-				-0.0
1,179,934	-				-1.9
1,179,934	-				-1.8
1,179,984	+				-0.6
1,179,984	+				-0.6
1,179,984	+				+0.1
1,179,984	+				+0.7
1,179,984	+				+2.0
1,179,984	+				-0.9
1,179,984	+				+0.5
1,179,984	+				+0.4
1,179,984	+				+0.4
1,179,985	-				-0.6
1,179,985	-				-0.6
1,179,990	+				-1.4
1,179,990	+				-1.5
1,179,990	+				+0.3
1,179,990	+				+0.8
1,179,990	+				-1.2
1,179,990	+				-0.3
1,179,990	+				+0.3
1,179,990	+				+1.0
1,179,990	+				-0.3
1,179,990	+				-0.9
1,179,990	+				-0.4
1,179,990	+				+0.2
1,179,990	+				+0.2
1,179,990	+				-1.3
1,179,990	+				+0.4
1,179,990	+				-1.7
1,179,990	+				-0.6
1,179,990	+				+0.7
1,179,990	+				+0.4
1,179,991	-				+1.0
1,179,991	-				-0.5
1,179,991	-				-1.5
1,179,991	-				-0.8
1,179,991	-				+0.2
1,179,991	-				+2.0
1,179,991	-				+0.6
1,179,991	-				-0.3
1,179,991	-				-0.9
1,179,991	-				+0.2
1,179,991	-				-0.6
1,179,991	-				+1.3
1,179,991	-				-0.7
1,179,991	-				-1.8
1,179,991	-				-0.9
1,179,991	-				+0.5
1,179,991	-				+1.8
1,179,991	-				-0.7
1,179,991	-				+1.3
1,180,161	+		LRK54_RS05470	0.12	+0.2
1,180,161	+		LRK54_RS05470	0.12	-0.4
1,180,161	+		LRK54_RS05470	0.12	+3.0
1,180,161	+		LRK54_RS05470	0.12	+1.6
1,180,161	+		LRK54_RS05470	0.12	+1.1
1,180,162	-		LRK54_RS05470	0.12	-0.0
1,180,162	-		LRK54_RS05470	0.12	+1.0
1,180,162	-		LRK54_RS05470	0.12	-0.7
1,180,162	-		LRK54_RS05470	0.12	+0.0
1,180,162	-		LRK54_RS05470	0.12	-2.1
1,180,257	+		LRK54_RS05470	0.18	-1.1
1,180,257	+		LRK54_RS05470	0.18	+1.3
1,180,257	+		LRK54_RS05470	0.18	+0.2
1,180,257	+		LRK54_RS05470	0.18	-0.2
1,180,257	+		LRK54_RS05470	0.18	+0.4
1,180,257	+		LRK54_RS05470	0.18	-1.0
1,180,257	+		LRK54_RS05470	0.18	+0.4
1,180,257	+		LRK54_RS05470	0.18	-0.3
1,180,257	+		LRK54_RS05470	0.18	+0.4
1,180,257	+		LRK54_RS05470	0.18	-1.3
1,180,257	+		LRK54_RS05470	0.18	-0.5
1,180,257	+		LRK54_RS05470	0.18	-0.5
1,180,257	+		LRK54_RS05470	0.18	-0.2
1,180,257	+		LRK54_RS05470	0.18	+0.2
1,180,257	+		LRK54_RS05470	0.18	-0.4
1,180,257	+		LRK54_RS05470	0.18	-1.1
1,180,257	+		LRK54_RS05470	0.18	-0.7
1,180,257	+		LRK54_RS05470	0.18	-0.2
1,180,257	+		LRK54_RS05470	0.18	-0.0
1,180,257	+		LRK54_RS05470	0.18	+0.4
1,180,257	+		LRK54_RS05470	0.18	-1.6
1,180,257	+		LRK54_RS05470	0.18	+0.3
1,180,258	-		LRK54_RS05470	0.18	-0.4
1,180,258	-		LRK54_RS05470	0.18	+2.0
1,180,258	-		LRK54_RS05470	0.18	+0.7
1,180,258	-		LRK54_RS05470	0.18	+1.2
1,180,258	-		LRK54_RS05470	0.18	+0.3
1,180,258	-		LRK54_RS05470	0.18	+0.7
1,180,258	-		LRK54_RS05470	0.18	+0.7
1,180,258	-		LRK54_RS05470	0.18	+0.1
1,180,258	-		LRK54_RS05470	0.18	+2.2
1,180,258	-		LRK54_RS05470	0.18	-0.9
1,180,258	-		LRK54_RS05470	0.18	-0.5
1,180,258	-		LRK54_RS05470	0.18	-0.0
1,180,258	-		LRK54_RS05470	0.18	+1.5
1,180,258	-		LRK54_RS05470	0.18	+2.3
1,180,258	-		LRK54_RS05470	0.18	-0.3
1,180,258	-		LRK54_RS05470	0.18	-0.5
1,180,258	-		LRK54_RS05470	0.18	-2.6
1,180,281	+		LRK54_RS05470	0.19	+1.6
1,180,281	+		LRK54_RS05470	0.19	-0.2
1,180,281	+		LRK54_RS05470	0.19	+0.0
1,180,282	-		LRK54_RS05470	0.19	-1.0
1,180,282	-		LRK54_RS05470	0.19	+0.2
1,180,527	+		LRK54_RS05470	0.34	-0.8
1,180,527	+		LRK54_RS05470	0.34	-0.2
1,180,528	-		LRK54_RS05470	0.34	-0.8
1,180,528	-		LRK54_RS05470	0.34	+0.8
1,180,899	+		LRK54_RS05470	0.57	-0.3
1,180,899	+		LRK54_RS05470	0.57	-0.1
1,180,899	+		LRK54_RS05470	0.57	-1.8
1,180,899	+		LRK54_RS05470	0.57	-0.7
1,180,899	+		LRK54_RS05470	0.57	+2.4
1,180,900	-		LRK54_RS05470	0.57	+0.7
1,180,900	-		LRK54_RS05470	0.57	-1.5
1,180,900	-		LRK54_RS05470	0.57	-1.8
1,180,900	-		LRK54_RS05470	0.57	-0.2
1,180,900	-		LRK54_RS05470	0.57	-1.1
1,180,900	-		LRK54_RS05470	0.57	-1.4
1,180,900	-		LRK54_RS05470	0.57	+0.6
1,180,900	-		LRK54_RS05470	0.57	+0.9
1,180,900	-		LRK54_RS05470	0.57	+0.1
1,180,900	-		LRK54_RS05470	0.57	-3.4
1,180,900	-		LRK54_RS05470	0.57	+0.1
1,181,089	-		LRK54_RS05470	0.69	+0.2
1,181,094	+		LRK54_RS05470	0.69	-0.1
1,181,094	+		LRK54_RS05470	0.69	+0.7
1,181,094	+		LRK54_RS05470	0.69	-0.9
1,181,094	+		LRK54_RS05470	0.69	+0.0
1,181,094	+		LRK54_RS05470	0.69	-1.6
1,181,095	-		LRK54_RS05470	0.70	+0.1
1,181,095	-		LRK54_RS05470	0.70	+0.2
1,181,190	+		LRK54_RS05470	0.75	+0.7
1,181,190	+		LRK54_RS05470	0.75	-0.2
1,181,190	+		LRK54_RS05470	0.75	+0.5
1,181,190	+		LRK54_RS05470	0.75	-0.3
1,181,190	+		LRK54_RS05470	0.75	-2.2
1,181,190	+		LRK54_RS05470	0.75	-0.1
1,181,190	+		LRK54_RS05470	0.75	-0.3
1,181,190	+		LRK54_RS05470	0.75	+0.7
1,181,190	+		LRK54_RS05470	0.75	-2.2
1,181,191	-		LRK54_RS05470	0.75	+1.0
1,181,191	-		LRK54_RS05470	0.75	-1.5
1,181,191	-		LRK54_RS05470	0.75	-0.5
1,181,191	-		LRK54_RS05470	0.75	-0.0
1,181,191	-		LRK54_RS05470	0.75	-0.5
1,181,191	-		LRK54_RS05470	0.75	-1.0
1,181,191	-		LRK54_RS05470	0.75	-1.3
1,181,191	-		LRK54_RS05470	0.75	-1.0
1,181,191	-		LRK54_RS05470	0.75	+1.0
1,181,191	-		LRK54_RS05470	0.75	-1.4
1,181,191	-		LRK54_RS05470	0.75	+0.6
1,181,191	-		LRK54_RS05470	0.75	+0.2
1,181,331	+		LRK54_RS05470	0.84	-0.1
1,181,334	+		LRK54_RS05470	0.84	-0.5
1,181,334	+		LRK54_RS05470	0.84	-0.7
1,181,334	+		LRK54_RS05470	0.84	-0.7
1,181,334	+		LRK54_RS05470	0.84	-0.7
1,181,334	+		LRK54_RS05470	0.84	-0.6
1,181,335	-		LRK54_RS05470	0.84	+1.1
1,181,335	-		LRK54_RS05470	0.84	-1.0
1,181,370	+		LRK54_RS05470	0.87	+0.1
1,181,370	+		LRK54_RS05470	0.87	-2.0
1,181,370	+		LRK54_RS05470	0.87	-0.7
1,181,370	+		LRK54_RS05470	0.87	+0.0
1,181,370	+		LRK54_RS05470	0.87	+0.1
1,181,370	+		LRK54_RS05470	0.87	-1.1
1,181,370	+		LRK54_RS05470	0.87	-0.6
1,181,370	+		LRK54_RS05470	0.87	-0.5
1,181,370	+		LRK54_RS05470	0.87	+0.3
1,181,370	+		LRK54_RS05470	0.87	+0.1
1,181,370	+		LRK54_RS05470	0.87	+2.2
1,181,370	+		LRK54_RS05470	0.87	-1.2
1,181,370	+		LRK54_RS05470	0.87	+1.2
1,181,370	+		LRK54_RS05470	0.87	+1.8
1,181,370	+		LRK54_RS05470	0.87	-0.1
1,181,370	+		LRK54_RS05470	0.87	-1.6
1,181,370	+		LRK54_RS05470	0.87	-0.5
1,181,370	+		LRK54_RS05470	0.87	+0.7
1,181,371	-		LRK54_RS05470	0.87	-0.8
1,181,371	-		LRK54_RS05470	0.87	+1.9
1,181,371	-		LRK54_RS05470	0.87	+0.7
1,181,371	-		LRK54_RS05470	0.87	-1.9
1,181,371	-		LRK54_RS05470	0.87	+0.3
1,181,371	-		LRK54_RS05470	0.87	+0.9
1,181,371	-		LRK54_RS05470	0.87	-1.8
1,181,371	-		LRK54_RS05470	0.87	-0.6
1,181,371	-		LRK54_RS05470	0.87	-1.1
1,181,371	-		LRK54_RS05470	0.87	-0.1
1,181,371	-		LRK54_RS05470	0.87	-0.0
1,181,371	-		LRK54_RS05470	0.87	+0.5
1,181,371	-		LRK54_RS05470	0.87	-0.6
1,181,371	-		LRK54_RS05470	0.87	+1.4
1,181,371	-		LRK54_RS05470	0.87	-0.2
1,181,371	-		LRK54_RS05470	0.87	+3.0
1,181,371	-		LRK54_RS05470	0.87	-0.8
1,181,371	-		LRK54_RS05470	0.87	+2.2
1,181,371	-		LRK54_RS05470	0.87	-0.9
1,181,371	-		LRK54_RS05470	0.87	-1.5
1,182,009	+		LRK54_RS05475	0.23	+0.0
1,182,009	+		LRK54_RS05475	0.23	-1.4
1,182,009	+		LRK54_RS05475	0.23	-0.0
1,182,009	+		LRK54_RS05475	0.23	+0.5
1,182,009	+		LRK54_RS05475	0.23	+1.4
1,182,009	+		LRK54_RS05475	0.23	+0.1
1,182,010	-		LRK54_RS05475	0.23	+0.2
1,182,010	-		LRK54_RS05475	0.23	-0.0
1,182,010	-		LRK54_RS05475	0.23	-0.6
1,182,010	-		LRK54_RS05475	0.23	-0.0
1,182,010	-		LRK54_RS05475	0.23	-0.9
1,182,010	-		LRK54_RS05475	0.23	-0.4
1,182,010	-		LRK54_RS05475	0.23	-1.1