Experiment: planktonic; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03290 and LRK54_RS03295 are separated by 192 nucleotides LRK54_RS03295 and LRK54_RS03300 are separated by 131 nucleotides
LRK54_RS03290: LRK54_RS03290 - RIP metalloprotease RseP, at 707,251 to 708,597
_RS03290
LRK54_RS03295: LRK54_RS03295 - outer membrane protein assembly factor BamA, at 708,790 to 711,210
_RS03295
LRK54_RS03300: LRK54_RS03300 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 711,342 to 712,370
_RS03300
Position (kb) 708
709
710
711
712 Strain fitness (log2 ratio) -2
-1
0
1
2 at 707.872 kb on + strand, within LRK54_RS03290 at 707.872 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.520 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 711.312 kb on + strand at 711.312 kb on + strand at 711.312 kb on + strand at 711.312 kb on + strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand at 711.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; remove 707,872 + LRK54_RS03290 0.46 -0.4 707,872 + LRK54_RS03290 0.46 -1.0 708,457 + LRK54_RS03290 0.90 +0.0 708,457 + LRK54_RS03290 0.90 -0.8 708,457 + LRK54_RS03290 0.90 -0.7 708,457 + LRK54_RS03290 0.90 -0.4 708,457 + LRK54_RS03290 0.90 -0.7 708,457 + LRK54_RS03290 0.90 -0.1 708,460 + LRK54_RS03290 0.90 -0.3 708,460 + LRK54_RS03290 0.90 -2.0 708,460 + LRK54_RS03290 0.90 -0.1 708,460 + LRK54_RS03290 0.90 -0.4 708,460 + LRK54_RS03290 0.90 -0.7 708,460 + LRK54_RS03290 0.90 -1.2 708,460 + LRK54_RS03290 0.90 -2.0 708,460 + LRK54_RS03290 0.90 -0.6 708,460 + LRK54_RS03290 0.90 -1.4 708,460 + LRK54_RS03290 0.90 -0.9 708,520 + -1.6 708,565 + +1.0 708,565 + -1.5 708,565 + +0.4 708,565 + +1.0 708,771 + -0.6 708,771 + +0.9 708,771 + +0.1 708,771 + +1.0 708,771 + +0.2 708,771 + +0.0 708,771 + -0.2 711,312 + -0.6 711,312 + -0.3 711,312 + -0.1 711,312 + -0.7 711,313 - -0.8 711,313 - -1.8 711,313 - -0.3 711,313 - -1.0 711,313 - +2.4 711,313 - +0.7 711,313 - +1.3 711,313 - +0.0 711,313 - +1.7 711,313 - -1.0 711,313 - +0.2 711,313 - -0.1
Or see this region's nucleotide sequence