Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13430

Experiment: biofilm; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM;
3,007,790	+				+0.7
3,007,791	-				-1.4
3,007,826	+				-0.9
3,007,826	+				+0.5
3,007,826	+				+1.0
3,007,826	+				-1.9
3,007,826	+				-0.5
3,007,826	+				-0.7
3,007,826	+				-0.1
3,007,826	+				+1.3
3,007,826	+				+0.7
3,007,826	+				+1.2
3,007,826	+				-0.6
3,007,826	+				-0.5
3,007,826	+				-0.8
3,007,827	-				-1.3
3,007,827	-				-1.7
3,007,827	-				+1.3
3,007,827	-				+0.1
3,007,827	-				-0.3
3,007,827	-				-0.9
3,007,827	-				+1.3
3,007,827	-				+0.3
3,007,830	+				-0.7
3,007,830	+				-0.1
3,007,830	+				-1.4
3,007,830	+				-1.0
3,007,830	+				-0.9
3,007,830	+				-0.7
3,007,830	+				-1.3
3,007,831	-				-1.7
3,007,831	-				-0.7
3,007,831	-				-0.2
3,007,831	-				-1.5
3,007,831	-				-1.9
3,007,831	-				-1.6
3,008,105	+		LRK54_RS13425	0.40	-0.4
3,008,105	+		LRK54_RS13425	0.40	-0.0
3,008,105	+		LRK54_RS13425	0.40	-1.3
3,008,105	+		LRK54_RS13425	0.40	-0.4
3,008,105	+		LRK54_RS13425	0.40	-0.1
3,008,106	-		LRK54_RS13425	0.40	-0.5
3,008,106	-		LRK54_RS13425	0.40	-0.5
3,008,106	-		LRK54_RS13425	0.40	+0.1
3,008,107	+		LRK54_RS13425	0.40	-2.3
3,008,475	-		LRK54_RS13425	0.90	-0.7
3,008,701	+		LRK54_RS13430	0.13	-2.1
3,008,701	+		LRK54_RS13430	0.13	-0.3
3,008,701	+		LRK54_RS13430	0.13	-0.8
3,008,702	-		LRK54_RS13430	0.13	+0.3
3,008,702	-		LRK54_RS13430	0.13	-0.9
3,008,738	-		LRK54_RS13430	0.17	-1.2
3,008,738	-		LRK54_RS13430	0.17	-2.0
3,008,738	-		LRK54_RS13430	0.17	-1.5
3,008,941	+		LRK54_RS13430	0.43	-0.3
3,008,941	+		LRK54_RS13430	0.43	-1.0
3,008,941	+		LRK54_RS13430	0.43	-2.7
3,008,941	+		LRK54_RS13430	0.43	+0.3
3,008,941	+		LRK54_RS13430	0.43	-0.1
3,008,942	-		LRK54_RS13430	0.43	-1.1
3,008,944	-		LRK54_RS13430	0.44	-0.5
3,009,175	+		LRK54_RS13430	0.73	-1.2
3,009,176	-		LRK54_RS13430	0.73	-1.0
3,009,176	-		LRK54_RS13430	0.73	-1.5
3,009,319	+				-0.7
3,009,319	+				-1.8
3,009,320	-				+0.0
3,009,320	-				-1.1
3,009,549	+		LRK54_RS13435	0.22	-1.1
3,009,549	+		LRK54_RS13435	0.22	+1.1
3,009,549	+		LRK54_RS13435	0.22	+0.5
3,009,549	+		LRK54_RS13435	0.22	-2.1
3,009,549	+		LRK54_RS13435	0.22	-1.0
3,009,550	-		LRK54_RS13435	0.22	+2.5
3,009,550	-		LRK54_RS13435	0.22	-0.8
3,009,550	-		LRK54_RS13435	0.22	-1.0
3,009,550	-		LRK54_RS13435	0.22	-0.2
3,009,550	-		LRK54_RS13435	0.22	+0.3
3,009,550	-		LRK54_RS13435	0.22	-2.3
3,009,996	+		LRK54_RS13435	0.88	+0.1
3,009,996	+		LRK54_RS13435	0.88	-0.8
3,009,996	+		LRK54_RS13435	0.88	-1.8
3,009,996	+		LRK54_RS13435	0.88	-0.1
3,009,996	+		LRK54_RS13435	0.88	-0.4
3,009,996	+		LRK54_RS13435	0.88	+0.1
3,009,997	-		LRK54_RS13435	0.88	-1.4
3,009,997	-		LRK54_RS13435	0.88	+0.4
3,009,997	-		LRK54_RS13435	0.88	-0.6
3,009,997	-		LRK54_RS13435	0.88	-0.6
3,009,997	-		LRK54_RS13435	0.88	-1.8
3,009,997	-		LRK54_RS13435	0.88	-0.8
3,009,997	-		LRK54_RS13435	0.88	-1.6
3,009,997	-		LRK54_RS13435	0.88	-1.8
3,010,084	+				+0.7
3,010,084	+				+1.0
3,010,085	-				-0.8
3,010,085	-				+0.0
3,010,085	-				-2.6
3,010,085	-				-0.4
3,010,085	-				+0.1
3,010,085	-				-1.6
3,010,085	-				-0.8
3,010,085	-				+0.8
3,010,085	-				-1.4
3,010,169	-				-0.7
3,010,169	-				-0.8
3,010,210	+		LRK54_RS13440	0.11	-0.7
3,010,210	+		LRK54_RS13440	0.11	+1.3
3,010,221	+		LRK54_RS13440	0.12	-0.0
3,010,221	+		LRK54_RS13440	0.12	+0.7
3,010,222	-		LRK54_RS13440	0.12	-1.4
3,010,222	-		LRK54_RS13440	0.12	+3.3
3,010,300	+		LRK54_RS13440	0.18	-0.7
3,010,300	+		LRK54_RS13440	0.18	-0.4
3,010,301	-		LRK54_RS13440	0.18	-1.8
3,010,301	-		LRK54_RS13440	0.18	+0.2
3,010,301	-		LRK54_RS13440	0.18	-0.4
3,010,301	-		LRK54_RS13440	0.18	-0.9