Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11255

Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Aluminum chloride 1mM
2,496,593	+				+1.5
2,496,594	-				-0.7
2,496,594	-				-0.2
2,496,594	-				-1.5
2,496,594	-				+1.0
2,496,594	-				-1.2
2,496,735	+		LRK54_RS11250	0.13	-2.0
2,496,735	+		LRK54_RS11250	0.13	-0.9
2,496,735	+		LRK54_RS11250	0.13	-0.8
2,496,735	+		LRK54_RS11250	0.13	+0.5
2,496,735	+		LRK54_RS11250	0.13	-0.9
2,496,735	+		LRK54_RS11250	0.13	-0.6
2,496,735	+		LRK54_RS11250	0.13	-0.3
2,496,735	+		LRK54_RS11250	0.13	+0.2
2,496,735	+		LRK54_RS11250	0.13	+0.8
2,496,735	+		LRK54_RS11250	0.13	+0.8
2,496,735	+		LRK54_RS11250	0.13	+0.8
2,496,735	+		LRK54_RS11250	0.13	-1.7
2,496,735	+		LRK54_RS11250	0.13	+0.9
2,496,735	+		LRK54_RS11250	0.13	+0.2
2,496,735	+		LRK54_RS11250	0.13	-1.5
2,496,735	+		LRK54_RS11250	0.13	-1.2
2,496,735	+		LRK54_RS11250	0.13	-1.5
2,496,735	+		LRK54_RS11250	0.13	-2.7
2,496,735	+		LRK54_RS11250	0.13	-1.0
2,496,735	+		LRK54_RS11250	0.13	+0.4
2,496,735	+		LRK54_RS11250	0.13	-1.0
2,496,735	+		LRK54_RS11250	0.13	+3.7
2,496,735	+		LRK54_RS11250	0.13	+0.6
2,496,735	+		LRK54_RS11250	0.13	+1.1
2,496,735	+		LRK54_RS11250	0.13	+1.0
2,496,735	+		LRK54_RS11250	0.13	-1.1
2,496,735	+		LRK54_RS11250	0.13	-1.7
2,496,735	+		LRK54_RS11250	0.13	+0.2
2,496,736	-		LRK54_RS11250	0.13	+0.5
2,496,736	-		LRK54_RS11250	0.13	-1.5
2,496,736	-		LRK54_RS11250	0.13	+0.5
2,496,736	-		LRK54_RS11250	0.13	-1.8
2,496,736	-		LRK54_RS11250	0.13	-1.9
2,496,736	-		LRK54_RS11250	0.13	-1.1
2,496,736	-		LRK54_RS11250	0.13	-0.9
2,496,736	-		LRK54_RS11250	0.13	-1.4
2,496,736	-		LRK54_RS11250	0.13	-1.0
2,496,736	-		LRK54_RS11250	0.13	+0.2
2,496,736	-		LRK54_RS11250	0.13	+3.0
2,496,736	-		LRK54_RS11250	0.13	-0.6
2,496,736	-		LRK54_RS11250	0.13	-0.2
2,496,736	-		LRK54_RS11250	0.13	+0.8
2,496,736	-		LRK54_RS11250	0.13	-0.7
2,496,736	-		LRK54_RS11250	0.13	-0.4
2,496,736	-		LRK54_RS11250	0.13	+0.7
2,496,736	-		LRK54_RS11250	0.13	+0.3
2,496,736	-		LRK54_RS11250	0.13	-0.4
2,496,736	-		LRK54_RS11250	0.13	+1.3
2,496,736	-		LRK54_RS11250	0.13	+2.0
2,496,736	-		LRK54_RS11250	0.13	-0.2
2,496,736	-		LRK54_RS11250	0.13	-1.0
2,496,736	-		LRK54_RS11250	0.13	-0.1
2,496,736	-		LRK54_RS11250	0.13	-1.0
2,496,736	-		LRK54_RS11250	0.13	-1.0
2,496,736	-		LRK54_RS11250	0.13	-0.4
2,496,736	-		LRK54_RS11250	0.13	-1.4
2,496,736	-		LRK54_RS11250	0.13	-0.3
2,496,736	-		LRK54_RS11250	0.13	-1.0
2,496,736	-		LRK54_RS11250	0.13	+0.0
2,496,736	-		LRK54_RS11250	0.13	+0.9
2,496,736	-		LRK54_RS11250	0.13	+0.4
2,496,736	-		LRK54_RS11250	0.13	-1.4
2,496,736	-		LRK54_RS11250	0.13	+1.0
2,496,995	+		LRK54_RS11250	0.48	-2.5
2,496,995	+		LRK54_RS11250	0.48	-0.2
2,496,995	+		LRK54_RS11250	0.48	-1.4
2,496,996	-		LRK54_RS11250	0.48	-1.9
2,496,996	-		LRK54_RS11250	0.48	-0.1
2,496,996	-		LRK54_RS11250	0.48	-1.8
2,497,001	+		LRK54_RS11250	0.48	-3.2
2,497,001	+		LRK54_RS11250	0.48	-0.8
2,497,001	+		LRK54_RS11250	0.48	-2.2
2,497,001	+		LRK54_RS11250	0.48	-0.1
2,497,001	+		LRK54_RS11250	0.48	+0.7
2,497,002	-		LRK54_RS11250	0.49	+2.4
2,497,002	-		LRK54_RS11250	0.49	-0.2
2,497,002	-		LRK54_RS11250	0.49	-1.7
2,497,002	-		LRK54_RS11250	0.49	-1.6
2,497,002	-		LRK54_RS11250	0.49	-3.0
2,497,002	-		LRK54_RS11250	0.49	+0.0
2,497,002	-		LRK54_RS11250	0.49	-2.2
2,497,002	-		LRK54_RS11250	0.49	-2.0
2,497,437	-				+1.1
2,497,437	-				-0.4
2,497,447	+				-0.8
2,497,447	+				-0.7
2,497,448	-				-0.5
2,497,448	-				+0.0
2,497,448	-				+1.7
2,497,448	-				-0.9
2,497,448	-				+0.4
2,497,448	-				-1.1
2,497,506	+				+1.2
2,497,506	+				+1.0
2,497,506	+				-1.7
2,497,506	+				-0.8
2,497,506	+				+1.3
2,497,506	+				+0.9
2,497,506	+				+0.8
2,497,506	+				-0.6
2,497,506	+				-0.1
2,497,506	+				-0.4
2,497,506	+				-1.1
2,497,506	+				-0.8
2,497,507	-				-1.1
2,497,507	-				+1.5
2,497,507	-				+2.0
2,497,507	-				-0.7
2,497,507	-				-1.9
2,497,507	-				+2.4
2,497,507	-				-2.2
2,497,507	-				-1.6
2,497,507	-				+0.7
2,497,566	+		LRK54_RS11255	0.16	+0.2
2,497,566	+		LRK54_RS11255	0.16	-0.1
2,497,566	+		LRK54_RS11255	0.16	+0.2
2,497,566	+		LRK54_RS11255	0.16	+1.1
2,497,567	-		LRK54_RS11255	0.16	-1.0
2,497,567	-		LRK54_RS11255	0.16	-0.1
2,497,567	-		LRK54_RS11255	0.16	+3.9
2,497,567	-		LRK54_RS11255	0.16	+1.3
2,497,567	-		LRK54_RS11255	0.16	-0.3
2,497,666	+		LRK54_RS11255	0.38	+0.6
2,497,666	+		LRK54_RS11255	0.38	+0.6
2,497,667	-		LRK54_RS11255	0.39	-1.1
2,497,667	-		LRK54_RS11255	0.39	+1.8
2,497,667	-		LRK54_RS11255	0.39	-0.5
2,497,749	-		LRK54_RS11255	0.57	+0.7
2,497,922	+				-0.8
2,497,922	+				-2.4
2,497,923	-				-0.7
2,497,923	-				-0.7
2,497,932	+				+1.1
2,497,932	+				-2.2
2,497,932	+				-0.1
2,497,932	+				+0.9
2,497,933	-				-1.2
2,497,933	-				+0.1
2,497,933	-				+1.1
2,497,933	-				+1.0
2,497,933	-				-1.6
2,497,933	-				+0.1
2,497,933	-				+0.7
2,497,933	-				+0.6
2,498,166	+		LRK54_RS11260	0.38	+2.9
2,498,166	+		LRK54_RS11260	0.38	+2.1
2,498,167	-		LRK54_RS11260	0.38	-1.1
2,498,167	-		LRK54_RS11260	0.38	+0.9
2,498,280	+		LRK54_RS11260	0.57	-1.3
2,498,280	+		LRK54_RS11260	0.57	+2.9
2,498,280	+		LRK54_RS11260	0.57	+3.4
2,498,280	+		LRK54_RS11260	0.57	-0.1
2,498,280	+		LRK54_RS11260	0.57	-1.1
2,498,280	+		LRK54_RS11260	0.57	-1.0
2,498,281	-		LRK54_RS11260	0.57	-0.4
2,498,281	-		LRK54_RS11260	0.57	-1.5
2,498,281	-		LRK54_RS11260	0.57	+0.5
2,498,391	+		LRK54_RS11260	0.77	+2.4
2,498,391	+		LRK54_RS11260	0.77	+0.9
2,498,391	+		LRK54_RS11260	0.77	-0.9
2,498,391	+		LRK54_RS11260	0.77	+1.1
2,498,391	+		LRK54_RS11260	0.77	-0.2
2,498,391	+		LRK54_RS11260	0.77	-0.7
2,498,391	+		LRK54_RS11260	0.77	+0.0
2,498,400	+		LRK54_RS11260	0.78	-1.3
2,498,400	+		LRK54_RS11260	0.78	-1.7
2,498,400	+		LRK54_RS11260	0.78	+1.6
2,498,400	+		LRK54_RS11260	0.78	+0.6
2,498,400	+		LRK54_RS11260	0.78	-1.0
2,498,400	+		LRK54_RS11260	0.78	-3.0
2,498,400	+		LRK54_RS11260	0.78	+0.0
2,498,400	+		LRK54_RS11260	0.78	+0.5
2,498,400	+		LRK54_RS11260	0.78	-0.6
2,498,400	+		LRK54_RS11260	0.78	+0.5
2,498,400	+		LRK54_RS11260	0.78	-1.0
2,498,400	+		LRK54_RS11260	0.78	-0.1
2,498,400	+		LRK54_RS11260	0.78	+0.3
2,498,400	+		LRK54_RS11260	0.78	+1.4
2,498,400	+		LRK54_RS11260	0.78	+0.1
2,498,400	+		LRK54_RS11260	0.78	+0.9
2,498,400	+		LRK54_RS11260	0.78	+0.2
2,498,400	+		LRK54_RS11260	0.78	+1.4
2,498,401	-		LRK54_RS11260	0.78	-0.6
2,498,401	-		LRK54_RS11260	0.78	+0.1
2,498,401	-		LRK54_RS11260	0.78	-0.6
2,498,401	-		LRK54_RS11260	0.78	+1.7
2,498,401	-		LRK54_RS11260	0.78	+0.6
2,498,401	-		LRK54_RS11260	0.78	-2.1
2,498,401	-		LRK54_RS11260	0.78	-1.5
2,498,401	-		LRK54_RS11260	0.78	+0.3
2,498,401	-		LRK54_RS11260	0.78	-0.8
2,498,401	-		LRK54_RS11260	0.78	-0.5
2,498,401	-		LRK54_RS11260	0.78	-1.2
2,498,401	-		LRK54_RS11260	0.78	-1.1
2,498,401	-		LRK54_RS11260	0.78	-1.4
2,498,401	-		LRK54_RS11260	0.78	+0.4
2,498,401	-		LRK54_RS11260	0.78	-1.4
2,498,401	-		LRK54_RS11260	0.78	-2.6
2,498,401	-		LRK54_RS11260	0.78	+0.2
2,498,401	-		LRK54_RS11260	0.78	-2.8
2,498,401	-		LRK54_RS11260	0.78	-0.2
2,498,401	-		LRK54_RS11260	0.78	+1.1
2,498,491	+				+0.9
2,498,491	+				-1.8
2,498,491	+				+1.1
2,498,491	+				+0.7
2,498,491	+				+0.2
2,498,491	+				-1.2
2,498,491	+				+0.5
2,498,491	+				-1.4
2,498,491	+				+0.9
2,498,491	+				+1.7
2,498,491	+				-0.5
2,498,491	+				+0.6
2,498,491	+				-0.2
2,498,491	+				-0.3
2,498,491	+				+0.3
2,498,491	+				+0.4
2,498,491	+				+0.4
2,498,491	+				-1.1
2,498,491	+				-2.6
2,498,491	+				+1.1
2,498,491	+				+0.2
2,498,491	+				+0.2
2,498,491	+				-1.5
2,498,491	+				+0.4
2,498,491	+				-0.6
2,498,491	+				+1.1
2,498,491	+				+2.8
2,498,491	+				-0.4
2,498,491	+				-1.8
2,498,492	-				-0.8
2,498,492	-				+1.1
2,498,492	-				-0.7
2,498,492	-				+0.0
2,498,492	-				-0.9
2,498,492	-				+0.8
2,498,492	-				-1.8
2,498,492	-				+0.6
2,498,492	-				-2.0
2,498,492	-				-0.3
2,498,492	-				+0.3
2,498,492	-				-1.3
2,498,492	-				-1.6
2,498,492	-				-1.7
2,498,492	-				+0.9
2,498,492	-				+0.6
2,498,492	-				-0.8
2,498,492	-				+0.9
2,498,492	-				-0.1
2,498,492	-				+1.1
2,498,492	-				+0.0
2,498,492	-				+0.5
2,498,492	-				-0.3
2,498,496	+				-0.6
2,498,496	+				+0.2
2,498,496	+				-1.1
2,498,496	+				-0.7
2,498,496	+				-0.7
2,498,496	+				-0.8
2,498,496	+				+2.4
2,498,496	+				+0.3
2,498,497	-				+0.4
2,498,497	-				+1.6
2,498,497	-				+0.3
2,498,497	-				-2.8
2,498,497	-				-0.9
2,498,497	-				+0.2
2,498,497	-				+0.8
2,498,497	-				-2.2
2,498,497	-				-0.6
2,498,497	-				-0.9
2,498,497	-				-0.9
2,498,497	-				-0.9
2,498,497	-				+0.1
2,498,497	-				+2.0
2,498,497	-				-1.7
2,498,497	-				-2.1
2,498,643	+		LRK54_RS11265	0.33	-1.0
2,498,643	+		LRK54_RS11265	0.33	-0.2
2,498,723	+		LRK54_RS11265	0.63	+0.0
2,498,723	+		LRK54_RS11265	0.63	-1.3
2,498,723	+		LRK54_RS11265	0.63	-3.3
2,498,723	+		LRK54_RS11265	0.63	+0.9
2,498,724	-		LRK54_RS11265	0.63	-2.9
2,498,724	-		LRK54_RS11265	0.63	+0.1
2,498,724	-		LRK54_RS11265	0.63	-1.0
2,498,724	-		LRK54_RS11265	0.63	-2.9
2,498,724	-		LRK54_RS11265	0.63	+0.7
2,498,724	-		LRK54_RS11265	0.63	-1.5
2,498,744	+		LRK54_RS11265	0.70	-2.5
2,498,744	+		LRK54_RS11265	0.70	-1.2
2,498,744	+		LRK54_RS11265	0.70	+2.6
2,498,744	+		LRK54_RS11265	0.70	-1.4
2,498,744	+		LRK54_RS11265	0.70	-0.9
2,498,744	+		LRK54_RS11265	0.70	-0.1
2,498,744	+		LRK54_RS11265	0.70	-0.4
2,498,744	+		LRK54_RS11265	0.70	-0.1
2,498,744	+		LRK54_RS11265	0.70	-0.2
2,498,744	+		LRK54_RS11265	0.70	-0.3
2,498,744	+		LRK54_RS11265	0.70	+0.9
2,498,744	+		LRK54_RS11265	0.70	+0.6
2,498,744	+		LRK54_RS11265	0.70	+0.4
2,498,744	+		LRK54_RS11265	0.70	-3.4
2,498,744	+		LRK54_RS11265	0.70	+1.2
2,498,745	-		LRK54_RS11265	0.71	-0.7
2,498,745	-		LRK54_RS11265	0.71	-0.0
2,498,745	-		LRK54_RS11265	0.71	+0.4
2,498,745	-		LRK54_RS11265	0.71	+0.3
2,498,745	-		LRK54_RS11265	0.71	-1.4
2,498,745	-		LRK54_RS11265	0.71	-0.4
2,498,745	-		LRK54_RS11265	0.71	+1.5
2,498,745	-		LRK54_RS11265	0.71	-1.4
2,498,745	-		LRK54_RS11265	0.71	-0.7
2,498,745	-		LRK54_RS11265	0.71	-0.6
2,498,745	-		LRK54_RS11265	0.71	-2.4
2,498,745	-		LRK54_RS11265	0.71	-0.2
2,498,745	-		LRK54_RS11265	0.71	-1.9
2,498,745	-		LRK54_RS11265	0.71	-1.1
2,498,745	-		LRK54_RS11265	0.71	-0.1