Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15905

Experiment: planktonic; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM;
3,502,129	+		LRK54_RS15895	0.51	-0.9
3,502,129	+		LRK54_RS15895	0.51	-0.7
3,502,129	+		LRK54_RS15895	0.51	+0.1
3,502,129	+		LRK54_RS15895	0.51	-1.4
3,502,130	-		LRK54_RS15895	0.52	+0.7
3,502,130	-		LRK54_RS15895	0.52	+0.7
3,502,130	-		LRK54_RS15895	0.52	+0.8
3,502,130	-		LRK54_RS15895	0.52	-1.6
3,502,130	-		LRK54_RS15895	0.52	-0.7
3,502,130	-		LRK54_RS15895	0.52	-1.5
3,502,201	+		LRK54_RS15895	0.60	-1.1
3,502,201	+		LRK54_RS15895	0.60	-1.1
3,502,201	+		LRK54_RS15895	0.60	+1.4
3,502,201	+		LRK54_RS15895	0.60	-1.1
3,502,201	+		LRK54_RS15895	0.60	-0.1
3,502,201	+		LRK54_RS15895	0.60	+0.2
3,502,201	+		LRK54_RS15895	0.60	-0.1
3,502,201	+		LRK54_RS15895	0.60	-1.8
3,502,201	+		LRK54_RS15895	0.60	-1.4
3,502,202	-		LRK54_RS15895	0.60	-0.1
3,502,202	-		LRK54_RS15895	0.60	-0.5
3,502,202	-		LRK54_RS15895	0.60	-1.5
3,502,208	+		LRK54_RS15895	0.61	+0.3
3,502,208	+		LRK54_RS15895	0.61	-1.2
3,502,208	+		LRK54_RS15895	0.61	+0.1
3,502,208	+		LRK54_RS15895	0.61	-0.1
3,502,208	+		LRK54_RS15895	0.61	-1.4
3,502,208	+		LRK54_RS15895	0.61	-0.5
3,502,208	+		LRK54_RS15895	0.61	-1.9
3,502,208	+		LRK54_RS15895	0.61	+0.9
3,502,208	+		LRK54_RS15895	0.61	-1.1
3,502,208	+		LRK54_RS15895	0.61	+1.1
3,502,208	+		LRK54_RS15895	0.61	+0.5
3,502,209	-		LRK54_RS15895	0.61	-0.3
3,502,209	-		LRK54_RS15895	0.61	-0.6
3,502,209	-		LRK54_RS15895	0.61	+0.4
3,502,209	-		LRK54_RS15895	0.61	-0.1
3,502,209	-		LRK54_RS15895	0.61	-0.5
3,502,209	-		LRK54_RS15895	0.61	-0.2
3,502,209	-		LRK54_RS15895	0.61	-0.5
3,502,209	-		LRK54_RS15895	0.61	+0.9
3,502,209	-		LRK54_RS15895	0.61	+1.2
3,502,209	-		LRK54_RS15895	0.61	+1.5
3,502,209	-		LRK54_RS15895	0.61	-0.5
3,502,209	-		LRK54_RS15895	0.61	-0.0
3,502,209	-		LRK54_RS15895	0.61	-0.4
3,502,209	-		LRK54_RS15895	0.61	-0.1
3,502,209	-		LRK54_RS15895	0.61	-0.6
3,502,209	-		LRK54_RS15895	0.61	-0.7
3,502,209	-		LRK54_RS15895	0.61	-0.2
3,502,361	-		LRK54_RS15895	0.78	+0.2
3,502,384	+		LRK54_RS15895	0.81	+0.3
3,502,384	+		LRK54_RS15895	0.81	-0.0
3,502,384	+		LRK54_RS15895	0.81	-1.2
3,502,385	-		LRK54_RS15895	0.81	+0.9
3,502,385	-		LRK54_RS15895	0.81	+1.0
3,502,385	-		LRK54_RS15895	0.81	+0.1
3,502,569	+				-0.9
3,502,569	+				-1.8
3,502,569	+				+0.8
3,502,569	+				-0.1
3,502,570	-				-1.2
3,502,570	-				-0.2
3,502,570	-				-1.9
3,502,570	-				-0.3
3,502,570	-				-1.1
3,502,570	-				+0.2
3,502,570	-				+0.6
3,502,639	+				-0.9
3,502,639	+				-0.3
3,502,639	+				-0.7
3,502,639	+				+1.2
3,502,639	+				-0.5
3,502,640	-				-0.5
3,502,640	-				-0.6
3,502,814	+		LRK54_RS15900	0.49	+2.1
3,502,814	+		LRK54_RS15900	0.49	+1.5
3,502,814	+		LRK54_RS15900	0.49	-0.3
3,502,815	-		LRK54_RS15900	0.49	-1.2
3,502,815	-		LRK54_RS15900	0.49	+0.6
3,502,815	-		LRK54_RS15900	0.49	-1.0
3,502,815	-		LRK54_RS15900	0.49	-0.9
3,502,815	-		LRK54_RS15900	0.49	-0.7
3,502,815	-		LRK54_RS15900	0.49	+0.4
3,502,815	-		LRK54_RS15900	0.49	-0.6
3,502,862	+		LRK54_RS15900	0.60	+0.7
3,502,862	+		LRK54_RS15900	0.60	+2.8
3,502,862	+		LRK54_RS15900	0.60	-0.9
3,502,863	-		LRK54_RS15900	0.60	-1.8
3,502,863	-		LRK54_RS15900	0.60	-0.1
3,502,863	-		LRK54_RS15900	0.60	+0.0
3,502,877	+		LRK54_RS15900	0.63	-0.5
3,502,877	+		LRK54_RS15900	0.63	-2.2
3,502,877	+		LRK54_RS15900	0.63	-0.9
3,502,877	+		LRK54_RS15900	0.63	-1.5
3,502,877	+		LRK54_RS15900	0.63	-3.1
3,502,877	+		LRK54_RS15900	0.63	-0.1
3,502,877	+		LRK54_RS15900	0.63	-0.1
3,502,877	+		LRK54_RS15900	0.63	+0.3
3,502,877	+		LRK54_RS15900	0.63	-2.4
3,502,878	-		LRK54_RS15900	0.63	-0.9
3,502,878	-		LRK54_RS15900	0.63	+0.8
3,502,878	-		LRK54_RS15900	0.63	+0.1
3,502,878	-		LRK54_RS15900	0.63	-0.4
3,502,878	-		LRK54_RS15900	0.63	-0.0
3,502,878	-		LRK54_RS15900	0.63	-1.3
3,502,878	-		LRK54_RS15900	0.63	-0.1
3,502,878	-		LRK54_RS15900	0.63	+0.4
3,502,954	+		LRK54_RS15900	0.81	-0.4
3,502,954	+		LRK54_RS15900	0.81	+0.3
3,502,954	+		LRK54_RS15900	0.81	+0.3
3,502,954	+		LRK54_RS15900	0.81	-2.5
3,502,954	+		LRK54_RS15900	0.81	-1.6
3,502,954	+		LRK54_RS15900	0.81	+1.3
3,502,954	+		LRK54_RS15900	0.81	-0.5
3,502,955	-		LRK54_RS15900	0.81	-0.6
3,502,955	-		LRK54_RS15900	0.81	+0.2
3,502,955	-		LRK54_RS15900	0.81	-0.3
3,502,955	-		LRK54_RS15900	0.81	+0.3
3,502,955	-		LRK54_RS15900	0.81	-0.6
3,502,955	-		LRK54_RS15900	0.81	-2.2
3,502,955	-		LRK54_RS15900	0.81	-0.3
3,502,955	-		LRK54_RS15900	0.81	+0.6
3,502,955	-		LRK54_RS15900	0.81	+0.8
3,502,955	-		LRK54_RS15900	0.81	+1.4
3,502,955	-		LRK54_RS15900	0.81	-0.2
3,502,955	-		LRK54_RS15900	0.81	-1.4
3,502,955	-		LRK54_RS15900	0.81	+0.1
3,502,955	-		LRK54_RS15900	0.81	-2.4
3,502,955	-		LRK54_RS15900	0.81	-0.4
3,502,955	-		LRK54_RS15900	0.81	+0.4
3,502,955	-		LRK54_RS15900	0.81	+0.8
3,502,955	-		LRK54_RS15900	0.81	+0.0
3,502,955	-		LRK54_RS15900	0.81	-1.6
3,502,955	-		LRK54_RS15900	0.81	-0.6
3,503,077	-				-1.5
3,503,294	+		LRK54_RS15905	0.28	-0.3
3,503,294	+		LRK54_RS15905	0.28	-0.3
3,503,294	+		LRK54_RS15905	0.28	-0.6
3,503,294	+		LRK54_RS15905	0.28	+1.8
3,503,294	+		LRK54_RS15905	0.28	-1.2
3,503,294	+		LRK54_RS15905	0.28	+0.4
3,503,294	+		LRK54_RS15905	0.28	-0.5
3,503,295	-		LRK54_RS15905	0.28	-1.2
3,503,295	-		LRK54_RS15905	0.28	-2.2
3,503,295	-		LRK54_RS15905	0.28	-0.5
3,503,295	-		LRK54_RS15905	0.28	-0.1
3,503,295	-		LRK54_RS15905	0.28	+0.5
3,503,295	-		LRK54_RS15905	0.28	-0.1
3,503,295	-		LRK54_RS15905	0.28	+0.9
3,503,295	-		LRK54_RS15905	0.28	+0.6
3,503,295	-		LRK54_RS15905	0.28	-0.8
3,503,295	-		LRK54_RS15905	0.28	+0.4
3,503,295	-		LRK54_RS15905	0.28	+0.9
3,503,342	-		LRK54_RS15905	0.36	+0.3
3,503,342	-		LRK54_RS15905	0.36	-0.5
3,503,468	+		LRK54_RS15905	0.57	+0.1
3,503,468	+		LRK54_RS15905	0.57	-0.7
3,503,468	+		LRK54_RS15905	0.57	+0.2
3,503,468	+		LRK54_RS15905	0.57	-0.8
3,503,468	+		LRK54_RS15905	0.57	+0.8
3,503,468	+		LRK54_RS15905	0.57	-1.0
3,503,468	+		LRK54_RS15905	0.57	-0.3
3,503,468	+		LRK54_RS15905	0.57	+0.3
3,503,468	+		LRK54_RS15905	0.57	-0.4
3,503,468	+		LRK54_RS15905	0.57	-0.5
3,503,468	+		LRK54_RS15905	0.57	-0.3
3,503,468	+		LRK54_RS15905	0.57	-0.1
3,503,468	+		LRK54_RS15905	0.57	-0.9
3,503,469	-		LRK54_RS15905	0.57	+0.0
3,503,469	-		LRK54_RS15905	0.57	-1.6
3,503,658	+		LRK54_RS15905	0.88	-0.3
3,503,658	+		LRK54_RS15905	0.88	+0.4
3,503,659	-		LRK54_RS15905	0.88	-0.8
3,503,659	-		LRK54_RS15905	0.88	-0.3
3,503,973	+		LRK54_RS15910	0.43	-0.9
3,503,973	+		LRK54_RS15910	0.43	+3.1
3,503,973	+		LRK54_RS15910	0.43	+0.3
3,503,973	+		LRK54_RS15910	0.43	+0.7
3,503,973	+		LRK54_RS15910	0.43	+0.1
3,503,973	+		LRK54_RS15910	0.43	-0.8
3,503,974	-		LRK54_RS15910	0.43	+1.3
3,503,974	-		LRK54_RS15910	0.43	-1.2
3,503,974	-		LRK54_RS15910	0.43	+0.1
3,504,072	+		LRK54_RS15910	0.60	-1.7
3,504,072	+		LRK54_RS15910	0.60	+0.1
3,504,072	+		LRK54_RS15910	0.60	+0.5
3,504,072	+		LRK54_RS15910	0.60	-0.4
3,504,072	+		LRK54_RS15910	0.60	-1.4
3,504,072	+		LRK54_RS15910	0.60	+0.7
3,504,072	+		LRK54_RS15910	0.60	-0.0
3,504,072	+		LRK54_RS15910	0.60	-0.8
3,504,073	-		LRK54_RS15910	0.61	+0.1
3,504,073	-		LRK54_RS15910	0.61	+1.0
3,504,073	-		LRK54_RS15910	0.61	+0.1
3,504,073	-		LRK54_RS15910	0.61	-0.1
3,504,073	-		LRK54_RS15910	0.61	+0.8
3,504,073	-		LRK54_RS15910	0.61	-0.3
3,504,073	-		LRK54_RS15910	0.61	+0.3
3,504,073	-		LRK54_RS15910	0.61	+2.8
3,504,073	-		LRK54_RS15910	0.61	-0.7
3,504,073	-		LRK54_RS15910	0.61	-2.3
3,504,073	-		LRK54_RS15910	0.61	+0.1
3,504,087	-		LRK54_RS15910	0.63	-0.5
3,504,228	+		LRK54_RS15910	0.88	-1.3
3,504,228	+		LRK54_RS15910	0.88	+1.4
3,504,228	+		LRK54_RS15910	0.88	+1.4
3,504,228	+		LRK54_RS15910	0.88	-1.1
3,504,228	+		LRK54_RS15910	0.88	+0.9
3,504,228	+		LRK54_RS15910	0.88	+0.8
3,504,229	-		LRK54_RS15910	0.89	+1.2
3,504,229	-		LRK54_RS15910	0.89	-1.7
3,504,229	-		LRK54_RS15910	0.89	+1.1
3,504,229	-		LRK54_RS15910	0.89	-0.0
3,504,229	-		LRK54_RS15910	0.89	-2.1
3,504,229	-		LRK54_RS15910	0.89	+0.2
3,504,229	-		LRK54_RS15910	0.89	+0.2
3,504,231	+		LRK54_RS15910	0.89	-0.4
3,504,231	+		LRK54_RS15910	0.89	+1.7
3,504,231	+		LRK54_RS15910	0.89	+0.4
3,504,231	+		LRK54_RS15910	0.89	+1.1
3,504,231	+		LRK54_RS15910	0.89	-0.4
3,504,231	+		LRK54_RS15910	0.89	+0.4
3,504,231	+		LRK54_RS15910	0.89	-1.7
3,504,231	+		LRK54_RS15910	0.89	-0.4
3,504,231	+		LRK54_RS15910	0.89	-1.1
3,504,231	+		LRK54_RS15910	0.89	-0.7
3,504,232	-		LRK54_RS15910	0.89	-0.5
3,504,232	-		LRK54_RS15910	0.89	+0.1
3,504,232	-		LRK54_RS15910	0.89	-0.6
3,504,232	-		LRK54_RS15910	0.89	-0.2
3,504,232	-		LRK54_RS15910	0.89	-1.9
3,504,232	-		LRK54_RS15910	0.89	-1.2
3,504,232	-		LRK54_RS15910	0.89	-0.7
3,504,232	-		LRK54_RS15910	0.89	+0.2
3,504,232	-		LRK54_RS15910	0.89	-0.2
3,504,232	-		LRK54_RS15910	0.89	-1.2
3,504,232	-		LRK54_RS15910	0.89	-0.3
3,504,232	-		LRK54_RS15910	0.89	-1.5
3,504,270	+				+0.5
3,504,270	+				+0.2
3,504,270	+				+1.3
3,504,270	+				-0.6
3,504,270	+				+0.2
3,504,270	+				-1.1
3,504,270	+				-0.2
3,504,270	+				+0.4
3,504,270	+				+0.9
3,504,270	+				+0.1
3,504,270	+				-0.4
3,504,270	+				+1.8
3,504,270	+				+1.7
3,504,270	+				+1.2
3,504,270	+				-0.1
3,504,270	+				+0.1
3,504,270	+				+0.3
3,504,270	+				-1.5
3,504,270	+				-0.6
3,504,270	+				-1.0
3,504,270	+				-0.3
3,504,270	+				+1.5
3,504,270	+				+0.8
3,504,270	+				+0.9
3,504,270	+				-0.4
3,504,271	-				+2.3
3,504,271	-				-2.3
3,504,271	-				-0.1
3,504,271	-				-0.2
3,504,271	-				-0.2
3,504,271	-				-0.6
3,504,271	-				-0.5
3,504,271	-				+1.0
3,504,271	-				+2.0
3,504,271	-				+0.7
3,504,271	-				+0.1
3,504,271	-				+0.0
3,504,271	-				-0.9
3,504,271	-				-0.9
3,504,271	-				-1.8
3,504,271	-				+0.9
3,504,271	-				+0.6
3,504,271	-				-0.5
3,504,271	-				-0.4
3,504,324	+				-1.4
3,504,324	+				+0.2
3,504,324	+				-1.0
3,504,324	+				-1.2
3,504,324	+				+0.5
3,504,324	+				+0.5
3,504,325	-				+0.5
3,504,325	-				+2.8
3,504,325	-				-0.1
3,504,325	-				+1.3
3,504,325	-				+1.8
3,504,325	-				+0.9
3,504,378	+				-0.6
3,504,378	+				-0.7
3,504,378	+				-0.7
3,504,378	+				-0.2
3,504,378	+				+1.5
3,504,378	+				+0.5
3,504,378	+				-2.3
3,504,378	+				+1.0
3,504,379	-				-1.1
3,504,379	-				+0.1
3,504,379	-				-0.7
3,504,379	-				+0.2
3,504,379	-				+0.3
3,504,379	-				+0.8
3,504,379	-				-0.5
3,504,379	-				+0.2
3,504,379	-				+0.8
3,504,379	-				-0.6
3,504,379	-				+1.5
3,504,590	-		LRK54_RS15915	0.22	+3.1
3,504,613	+		LRK54_RS15915	0.25	-0.9
3,504,613	+		LRK54_RS15915	0.25	-0.3
3,504,613	+		LRK54_RS15915	0.25	-1.0
3,504,613	+		LRK54_RS15915	0.25	-1.0
3,504,613	+		LRK54_RS15915	0.25	+1.6
3,504,613	+		LRK54_RS15915	0.25	+0.9
3,504,613	+		LRK54_RS15915	0.25	-0.6
3,504,614	-		LRK54_RS15915	0.25	+1.3
3,504,614	-		LRK54_RS15915	0.25	-0.7
3,504,614	-		LRK54_RS15915	0.25	+0.8
3,504,614	-		LRK54_RS15915	0.25	-0.2
3,504,614	-		LRK54_RS15915	0.25	-1.8
3,504,616	+		LRK54_RS15915	0.25	+0.2
3,504,616	+		LRK54_RS15915	0.25	+0.1
3,504,617	-		LRK54_RS15915	0.25	-0.2