Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15635

Experiment: biofilm; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM;
3,448,231	+		LRK54_RS15630	0.30	-2.8
3,448,231	+		LRK54_RS15630	0.30	-0.2
3,448,231	+		LRK54_RS15630	0.30	-0.4
3,448,231	+		LRK54_RS15630	0.30	-0.3
3,448,232	-		LRK54_RS15630	0.30	+1.4
3,448,232	-		LRK54_RS15630	0.30	-0.4
3,448,232	-		LRK54_RS15630	0.30	-0.0
3,448,232	-		LRK54_RS15630	0.30	+0.7
3,448,232	-		LRK54_RS15630	0.30	+1.2
3,448,232	-		LRK54_RS15630	0.30	-0.9
3,448,232	-		LRK54_RS15630	0.30	-0.8
3,448,232	-		LRK54_RS15630	0.30	-2.1
3,448,232	-		LRK54_RS15630	0.30	-0.2
3,448,237	+		LRK54_RS15630	0.30	+1.2
3,448,237	+		LRK54_RS15630	0.30	-1.1
3,448,237	+		LRK54_RS15630	0.30	+0.4
3,448,237	+		LRK54_RS15630	0.30	+0.3
3,448,237	+		LRK54_RS15630	0.30	+1.3
3,448,237	+		LRK54_RS15630	0.30	-0.0
3,448,237	+		LRK54_RS15630	0.30	+0.1
3,448,237	+		LRK54_RS15630	0.30	-0.4
3,448,237	+		LRK54_RS15630	0.30	-0.3
3,448,237	+		LRK54_RS15630	0.30	+0.5
3,448,237	+		LRK54_RS15630	0.30	-0.8
3,448,237	+		LRK54_RS15630	0.30	-1.7
3,448,237	+		LRK54_RS15630	0.30	-0.1
3,448,237	+		LRK54_RS15630	0.30	-0.2
3,448,237	+		LRK54_RS15630	0.30	+0.1
3,448,237	+		LRK54_RS15630	0.30	-0.5
3,448,237	+		LRK54_RS15630	0.30	+0.7
3,448,237	+		LRK54_RS15630	0.30	+1.4
3,448,237	+		LRK54_RS15630	0.30	+0.4
3,448,237	+		LRK54_RS15630	0.30	-0.2
3,448,237	+		LRK54_RS15630	0.30	-1.1
3,448,237	+		LRK54_RS15630	0.30	-0.8
3,448,237	+		LRK54_RS15630	0.30	+0.5
3,448,237	-		LRK54_RS15630	0.30	+1.1
3,448,238	-		LRK54_RS15630	0.30	-0.0
3,448,238	-		LRK54_RS15630	0.30	-2.0
3,448,238	-		LRK54_RS15630	0.30	-0.5
3,448,238	-		LRK54_RS15630	0.30	-0.6
3,448,238	-		LRK54_RS15630	0.30	+0.3
3,448,238	-		LRK54_RS15630	0.30	+2.7
3,448,238	-		LRK54_RS15630	0.30	-2.7
3,448,238	-		LRK54_RS15630	0.30	+0.2
3,448,238	-		LRK54_RS15630	0.30	+1.6
3,448,238	-		LRK54_RS15630	0.30	+2.0
3,448,238	-		LRK54_RS15630	0.30	+1.1
3,448,238	-		LRK54_RS15630	0.30	+0.3
3,448,238	-		LRK54_RS15630	0.30	-0.8
3,448,238	-		LRK54_RS15630	0.30	+0.1
3,448,238	-		LRK54_RS15630	0.30	-1.3
3,448,238	-		LRK54_RS15630	0.30	+0.0
3,448,238	-		LRK54_RS15630	0.30	+0.7
3,448,238	-		LRK54_RS15630	0.30	-0.9
3,448,238	-		LRK54_RS15630	0.30	-0.6
3,448,238	-		LRK54_RS15630	0.30	-0.2
3,448,238	-		LRK54_RS15630	0.30	-0.3
3,448,846	+				-0.5
3,448,846	+				-1.7
3,448,846	+				+1.2
3,448,846	+				-0.3
3,448,846	+				+0.5
3,448,846	+				-1.0
3,448,846	+				+0.6
3,448,846	+				-0.9
3,448,846	+				-0.9
3,448,846	+				-0.3
3,448,846	+				+0.5
3,448,846	+				-1.7
3,448,846	+				-0.8
3,448,846	+				-0.9
3,448,846	+				+0.3
3,448,846	+				-0.0
3,448,846	+				+0.3
3,448,846	+				+0.3
3,448,846	+				-0.4
3,448,846	+				-0.1
3,448,846	+				+1.7
3,448,846	+				+1.6
3,448,846	+				-0.2
3,448,846	+				+0.0
3,448,846	+				-1.0
3,448,846	+				+0.3
3,448,846	+				-0.3
3,448,846	+				-0.7
3,448,846	+				-0.8
3,448,846	+				+4.1
3,448,846	+				-1.6
3,448,846	+				-0.1
3,448,846	+				+0.7
3,448,846	+				+0.3
3,448,846	+				-0.3
3,448,846	+				-0.5
3,448,846	+				+1.2
3,448,846	+				+0.4
3,448,846	+				+0.2
3,448,846	+				-0.7
3,448,846	+				+0.7
3,448,846	+				-1.0
3,448,846	+				-2.4
3,448,846	+				+1.0
3,448,846	+				+0.4
3,448,846	+				-0.8
3,448,846	+				-0.8
3,448,846	+				+0.0
3,448,846	+				-1.3
3,448,846	+				-0.5
3,448,846	+				-0.3
3,448,846	+				-0.7
3,448,846	+				-0.1
3,448,846	+				+1.5
3,448,846	+				+1.0
3,448,846	+				-0.6
3,448,847	-				-2.5
3,448,847	-				-1.3
3,448,847	-				-0.8
3,448,847	-				+1.1
3,448,847	-				+1.4
3,448,847	-				+1.1
3,448,847	-				+1.3
3,448,847	-				+1.0
3,448,847	-				+0.4
3,448,847	-				+0.6
3,448,847	-				+0.5
3,448,847	-				-2.2
3,448,847	-				-1.4
3,448,847	-				+0.1
3,448,847	-				-0.0
3,448,847	-				+0.8
3,448,847	-				+0.1
3,448,847	-				-0.1
3,448,847	-				+0.2
3,448,847	-				+2.1
3,448,847	-				+2.7
3,448,847	-				-0.1
3,448,847	-				+0.9
3,448,847	-				-1.9
3,448,847	-				+1.2
3,448,847	-				-0.2
3,448,847	-				-1.3
3,448,847	-				-1.5
3,448,847	-				+0.6
3,448,847	-				-0.6
3,448,847	-				+1.3
3,448,847	-				+0.6
3,448,847	-				-0.7
3,448,847	-				+0.2
3,448,847	-				+0.3
3,448,847	-				-0.6
3,448,847	-				-0.3
3,448,847	-				-0.2
3,448,847	-				+1.0
3,448,847	-				-0.5
3,448,848	-				+0.6
3,448,864	+				+0.4
3,448,864	+				-0.3
3,448,864	+				+0.6
3,448,864	+				-0.3
3,448,864	+				+1.0
3,448,865	-				-1.2
3,448,865	-				+0.5
3,448,865	-				+0.5
3,448,865	-				+2.6
3,448,865	-				-1.4
3,448,865	-				+1.3
3,448,865	-				-1.1
3,448,865	-				-0.4
3,448,901	+				-0.3
3,448,943	+				+0.2
3,448,943	+				-0.3
3,448,943	+				-0.3
3,448,943	+				+0.1
3,448,943	+				-0.9
3,448,943	+				+1.5
3,448,943	+				-2.0
3,448,943	+				+0.6
3,448,944	-				+0.8
3,448,944	-				-1.8
3,448,944	-				-0.3
3,448,944	-				+1.0
3,448,944	-				-0.2
3,448,944	-				-0.1
3,448,944	-				-0.1
3,448,944	-				-0.8
3,449,032	+		LRK54_RS15635	0.42	-1.4
3,449,032	+		LRK54_RS15635	0.42	-0.5
3,449,032	+		LRK54_RS15635	0.42	+1.3
3,449,033	-		LRK54_RS15635	0.43	+0.4
3,449,033	-		LRK54_RS15635	0.43	+0.4
3,449,033	-		LRK54_RS15635	0.43	-1.0
3,449,116	+		LRK54_RS15635	0.84	-2.4
3,449,116	+		LRK54_RS15635	0.84	+0.1
3,449,116	+		LRK54_RS15635	0.84	+0.5
3,449,116	+		LRK54_RS15635	0.84	-2.2
3,449,117	-		LRK54_RS15635	0.85	+1.3
3,449,117	-		LRK54_RS15635	0.85	+0.1
3,449,117	-		LRK54_RS15635	0.85	+0.9
3,449,117	-		LRK54_RS15635	0.85	+0.1
3,449,140	+				+1.8
3,449,140	+				-2.5
3,449,140	+				+1.8
3,449,140	+				+0.4
3,449,140	+				-1.5
3,449,141	-				-0.1
3,449,141	-				-0.2
3,449,141	-				-0.5
3,449,141	-				-0.1
3,449,141	-				-0.3
3,449,141	-				+1.4
3,449,142	-				-0.9
3,449,152	-				-1.7
3,449,342	+				-1.3
3,449,343	-				+0.9
3,449,343	-				+1.5
3,449,723	+		LRK54_RS15640	0.27	+1.6
3,449,723	+		LRK54_RS15640	0.27	-0.3
3,449,723	+		LRK54_RS15640	0.27	+0.4
3,449,723	+		LRK54_RS15640	0.27	-0.8
3,449,723	+		LRK54_RS15640	0.27	-0.2
3,449,723	+		LRK54_RS15640	0.27	+1.6
3,449,723	+		LRK54_RS15640	0.27	+0.3
3,449,723	+		LRK54_RS15640	0.27	+0.9
3,449,723	+		LRK54_RS15640	0.27	+1.7
3,449,723	+		LRK54_RS15640	0.27	+0.5
3,449,723	+		LRK54_RS15640	0.27	+0.8
3,449,723	+		LRK54_RS15640	0.27	+1.0
3,449,723	+		LRK54_RS15640	0.27	+0.6
3,449,723	+		LRK54_RS15640	0.27	+0.8
3,449,723	+		LRK54_RS15640	0.27	-0.8
3,449,723	+		LRK54_RS15640	0.27	-0.2
3,449,723	-		LRK54_RS15640	0.27	+0.9
3,449,724	-		LRK54_RS15640	0.27	-0.5
3,449,724	-		LRK54_RS15640	0.27	+0.5
3,449,724	-		LRK54_RS15640	0.27	+0.3
3,449,724	-		LRK54_RS15640	0.27	+0.3
3,449,724	-		LRK54_RS15640	0.27	-1.4
3,449,724	-		LRK54_RS15640	0.27	-0.1
3,449,724	-		LRK54_RS15640	0.27	+0.3
3,449,724	-		LRK54_RS15640	0.27	+1.6
3,449,724	-		LRK54_RS15640	0.27	+0.9
3,449,828	+		LRK54_RS15640	0.32	-1.3
3,449,828	+		LRK54_RS15640	0.32	-2.3
3,449,828	+		LRK54_RS15640	0.32	+0.9
3,449,828	+		LRK54_RS15640	0.32	+0.6
3,449,828	+		LRK54_RS15640	0.32	-0.9
3,449,828	+		LRK54_RS15640	0.32	-0.3
3,449,828	+		LRK54_RS15640	0.32	-0.8
3,449,828	+		LRK54_RS15640	0.32	+0.5
3,449,828	+		LRK54_RS15640	0.32	-1.3
3,449,829	-		LRK54_RS15640	0.32	+0.3
3,449,829	-		LRK54_RS15640	0.32	-0.3
3,449,829	-		LRK54_RS15640	0.32	-0.2
3,449,829	-		LRK54_RS15640	0.32	-0.7
3,449,876	+		LRK54_RS15640	0.34	+0.4
3,449,876	+		LRK54_RS15640	0.34	+0.3
3,449,876	+		LRK54_RS15640	0.34	-1.4
3,449,876	+		LRK54_RS15640	0.34	-3.1
3,449,876	+		LRK54_RS15640	0.34	-0.9
3,449,877	-		LRK54_RS15640	0.34	+2.6
3,449,877	-		LRK54_RS15640	0.34	-0.3
3,449,877	-		LRK54_RS15640	0.34	+0.9
3,449,877	-		LRK54_RS15640	0.34	-0.3
3,449,880	+		LRK54_RS15640	0.35	-0.8
3,449,880	+		LRK54_RS15640	0.35	+0.2
3,449,880	+		LRK54_RS15640	0.35	+0.7
3,449,880	+		LRK54_RS15640	0.35	-2.1
3,449,880	+		LRK54_RS15640	0.35	-0.8
3,449,880	+		LRK54_RS15640	0.35	-0.2
3,449,880	+		LRK54_RS15640	0.35	-0.6
3,449,880	+		LRK54_RS15640	0.35	-1.6
3,449,880	+		LRK54_RS15640	0.35	-1.3
3,449,880	+		LRK54_RS15640	0.35	-1.3
3,449,880	+		LRK54_RS15640	0.35	-1.0
3,449,880	+		LRK54_RS15640	0.35	-1.0
3,449,880	+		LRK54_RS15640	0.35	-0.6
3,449,880	+		LRK54_RS15640	0.35	+0.9
3,449,880	+		LRK54_RS15640	0.35	-2.4
3,449,881	-		LRK54_RS15640	0.35	-0.1
3,449,881	-		LRK54_RS15640	0.35	+0.2
3,449,881	-		LRK54_RS15640	0.35	-1.9
3,449,881	-		LRK54_RS15640	0.35	-0.3
3,449,881	-		LRK54_RS15640	0.35	+1.0
3,449,881	-		LRK54_RS15640	0.35	+0.7
3,449,881	-		LRK54_RS15640	0.35	+0.4
3,449,881	-		LRK54_RS15640	0.35	+0.3
3,449,903	+		LRK54_RS15640	0.36	-0.3
3,449,903	+		LRK54_RS15640	0.36	+0.0
3,449,903	+		LRK54_RS15640	0.36	+0.6
3,449,903	+		LRK54_RS15640	0.36	+0.6
3,449,903	+		LRK54_RS15640	0.36	-0.3
3,449,903	+		LRK54_RS15640	0.36	-0.3
3,449,903	+		LRK54_RS15640	0.36	-1.2
3,449,903	+		LRK54_RS15640	0.36	+0.6
3,449,903	+		LRK54_RS15640	0.36	+0.3
3,449,903	+		LRK54_RS15640	0.36	-2.5
3,449,903	+		LRK54_RS15640	0.36	-1.7
3,449,904	-		LRK54_RS15640	0.36	+0.2
3,449,904	-		LRK54_RS15640	0.36	-0.2
3,449,904	-		LRK54_RS15640	0.36	+0.4
3,449,904	-		LRK54_RS15640	0.36	+1.1
3,449,904	-		LRK54_RS15640	0.36	-0.9
3,449,904	-		LRK54_RS15640	0.36	-0.4
3,449,904	-		LRK54_RS15640	0.36	-0.2
3,449,904	-		LRK54_RS15640	0.36	-0.6
3,449,904	-		LRK54_RS15640	0.36	-0.9
3,449,904	-		LRK54_RS15640	0.36	+0.1
3,449,904	-		LRK54_RS15640	0.36	-1.4
3,450,023	-		LRK54_RS15640	0.41	+0.1
3,450,023	-		LRK54_RS15640	0.41	+0.1
3,450,023	-		LRK54_RS15640	0.41	-1.8