Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17070

Experiment: planktonic; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM;
3,728,674	+		LRK54_RS17060	0.28	+0.2
3,728,861	+		LRK54_RS17060	0.81	-0.8
3,728,861	+		LRK54_RS17060	0.81	-1.4
3,728,861	+		LRK54_RS17060	0.81	-1.6
3,728,862	-		LRK54_RS17060	0.82	-1.2
3,728,862	-		LRK54_RS17060	0.82	+1.2
3,728,993	+				-0.9
3,728,993	+				-0.0
3,728,993	+				-0.3
3,728,993	+				-0.5
3,728,993	+				-1.1
3,728,993	+				-2.6
3,728,993	+				+1.9
3,728,993	+				-0.1
3,728,993	+				+0.0
3,728,994	-				+2.0
3,728,994	-				+0.2
3,728,994	-				+0.7
3,728,994	-				+0.9
3,728,994	-				-0.3
3,728,994	-				-0.1
3,728,994	-				+1.0
3,728,994	-				+1.1
3,728,994	-				+1.0
3,728,994	-				-0.7
3,728,994	-				-1.5
3,728,994	-				+1.3
3,728,994	-				-0.1
3,728,994	-				-2.5
3,728,996	+				-0.6
3,728,996	+				+0.4
3,728,996	+				+1.2
3,728,996	+				+0.4
3,728,996	+				+1.1
3,728,996	+				-0.7
3,728,996	+				-0.4
3,728,996	+				+0.0
3,728,996	+				-0.2
3,728,996	+				-0.9
3,728,996	+				-0.3
3,728,996	+				-1.3
3,728,996	+				-0.8
3,728,997	-				+1.2
3,728,997	-				-1.7
3,728,997	-				+0.5
3,728,997	-				-0.3
3,728,997	-				-1.0
3,728,997	-				+0.4
3,728,997	-				-0.0
3,728,997	-				+0.0
3,728,997	-				+0.1
3,728,997	-				+1.4
3,729,282	+				-0.9
3,729,282	+				+0.3
3,729,283	-				-1.2
3,729,283	-				-0.4
3,729,283	-				-0.1
3,729,283	-				+0.4
3,729,283	-				-0.3
3,729,283	-				-0.3
3,729,283	-				-0.4
3,729,283	-				-1.8
3,729,329	+				+1.5
3,729,329	+				-1.0
3,729,329	+				+0.1
3,729,329	+				+0.1
3,729,329	+				+0.1
3,729,329	+				-0.5
3,729,329	+				-0.0
3,729,330	-				+0.4
3,729,330	-				-1.6
3,729,330	-				-2.7
3,729,330	-				+0.2
3,729,330	-				+0.3
3,729,330	-				+1.6
3,729,418	+				+0.4
3,729,418	+				+0.4
3,729,418	+				-0.4
3,729,418	+				+0.4
3,729,418	+				-0.9
3,729,418	+				+1.8
3,729,418	+				-0.1
3,729,418	+				+0.3
3,729,418	+				+1.0
3,729,418	+				-0.5
3,729,418	+				+0.7
3,729,418	+				-1.6
3,729,419	-				+1.1
3,729,419	-				-1.1
3,729,419	-				+0.1
3,729,419	-				+0.3
3,729,419	-				-0.8
3,729,419	-				-0.9
3,729,419	-				-1.7
3,729,484	+				+0.9
3,729,484	+				-1.4
3,729,484	+				+0.5
3,729,484	+				-2.4
3,729,485	-				-2.1
3,729,496	+				-0.5
3,729,497	-				-1.2
3,729,497	-				-0.7
3,729,523	+				-0.5
3,729,523	+				+0.7
3,729,523	+				+0.4
3,729,523	+				+0.3
3,729,523	+				+0.8
3,729,523	+				-0.1
3,729,523	+				-0.8
3,729,523	+				+0.9
3,729,523	+				-0.2
3,729,523	+				-1.0
3,729,523	+				-0.7
3,729,523	+				-0.4
3,729,523	+				-1.0
3,729,523	+				+0.6
3,729,523	+				+0.4
3,729,523	+				-0.8
3,729,523	+				-1.1
3,729,524	-				-0.5
3,729,524	-				+0.8
3,729,524	-				-0.1
3,729,524	-				-0.2
3,729,524	-				+0.6
3,729,524	-				-2.4
3,729,524	-				-0.4
3,729,524	-				-1.6
3,729,524	-				+1.4
3,729,524	-				+0.7
3,729,524	-				+0.0
3,729,524	-				-1.3
3,729,524	-				-1.6
3,729,524	-				-2.5
3,729,524	-				-0.5
3,729,524	-				+0.3
3,729,524	-				+0.4
3,729,535	+				+0.8
3,729,535	+				-0.1
3,729,535	+				-3.1
3,729,535	+				-0.5
3,729,536	-				+0.4
3,729,536	-				-0.7
3,729,536	-				-2.2
3,729,536	-				-1.7
3,729,536	-				-0.1
3,729,536	-				+0.9
3,729,572	+				+0.4
3,729,572	+				+0.3
3,729,573	-				-2.2
3,729,573	-				+0.2
3,729,702	+		LRK54_RS17070	0.45	-0.6
3,729,703	-		LRK54_RS17070	0.45	-0.4
3,729,703	-		LRK54_RS17070	0.45	+0.5
3,729,723	+		LRK54_RS17070	0.53	-2.2
3,729,723	+		LRK54_RS17070	0.53	-0.7
3,729,723	+		LRK54_RS17070	0.53	+1.1
3,729,723	+		LRK54_RS17070	0.53	-1.9
3,729,723	+		LRK54_RS17070	0.53	-0.2
3,729,723	+		LRK54_RS17070	0.53	-0.0
3,729,723	+		LRK54_RS17070	0.53	-0.9
3,729,723	+		LRK54_RS17070	0.53	-1.0
3,729,723	+		LRK54_RS17070	0.53	-1.0
3,729,723	+		LRK54_RS17070	0.53	+0.4
3,729,723	+		LRK54_RS17070	0.53	+0.7
3,729,723	+		LRK54_RS17070	0.53	+0.5
3,729,723	+		LRK54_RS17070	0.53	+0.4
3,729,723	+		LRK54_RS17070	0.53	+0.4
3,729,723	+		LRK54_RS17070	0.53	+0.2
3,729,723	+		LRK54_RS17070	0.53	+1.4
3,729,723	+		LRK54_RS17070	0.53	-0.6
3,729,724	-		LRK54_RS17070	0.53	-2.1
3,729,724	-		LRK54_RS17070	0.53	-2.0
3,729,724	-		LRK54_RS17070	0.53	+3.2
3,729,724	-		LRK54_RS17070	0.53	+0.4
3,729,724	-		LRK54_RS17070	0.53	+0.7
3,729,724	-		LRK54_RS17070	0.53	-0.8
3,729,724	-		LRK54_RS17070	0.53	+1.2
3,729,724	-		LRK54_RS17070	0.53	-1.4
3,729,724	-		LRK54_RS17070	0.53	+0.5
3,729,724	-		LRK54_RS17070	0.53	+0.1
3,729,794	+		LRK54_RS17070	0.81	+0.0
3,729,795	-		LRK54_RS17070	0.81	-0.3
3,729,884	+		LRK54_RS17075	0.18	+1.3
3,729,884	+		LRK54_RS17075	0.18	+0.4
3,729,884	+		LRK54_RS17075	0.18	-0.9
3,729,884	+		LRK54_RS17075	0.18	+1.1
3,729,885	-		LRK54_RS17075	0.18	+2.6
3,729,885	-		LRK54_RS17075	0.18	-0.9
3,729,885	-		LRK54_RS17075	0.18	-0.1
3,729,914	+		LRK54_RS17075	0.29	-1.4
3,729,914	+		LRK54_RS17075	0.29	-0.5
3,729,914	+		LRK54_RS17075	0.29	-0.6
3,729,914	+		LRK54_RS17075	0.29	-0.6
3,729,914	+		LRK54_RS17075	0.29	+0.5
3,729,914	+		LRK54_RS17075	0.29	-1.2
3,729,915	-		LRK54_RS17075	0.30	+0.6
3,729,915	-		LRK54_RS17075	0.30	+0.2
3,729,915	-		LRK54_RS17075	0.30	-0.6
3,729,915	-		LRK54_RS17075	0.30	-1.3
3,729,954	+		LRK54_RS17075	0.45	+1.0
3,729,954	+		LRK54_RS17075	0.45	-2.9
3,729,955	-		LRK54_RS17075	0.45	+1.7
3,730,043	+		LRK54_RS17075	0.80	+0.1
3,730,043	+		LRK54_RS17075	0.80	+0.2
3,730,043	+		LRK54_RS17075	0.80	-0.4
3,730,043	+		LRK54_RS17075	0.80	+0.3
3,730,043	+		LRK54_RS17075	0.80	+0.9
3,730,043	+		LRK54_RS17075	0.80	+0.0
3,730,043	+		LRK54_RS17075	0.80	+1.1
3,730,043	+		LRK54_RS17075	0.80	-0.3
3,730,043	+		LRK54_RS17075	0.80	+0.8
3,730,044	-		LRK54_RS17075	0.80	+0.6
3,730,044	-		LRK54_RS17075	0.80	+3.2
3,730,044	-		LRK54_RS17075	0.80	-0.9
3,730,044	-		LRK54_RS17075	0.80	-0.1
3,730,044	-		LRK54_RS17075	0.80	+0.7
3,730,044	-		LRK54_RS17075	0.80	+0.3
3,730,044	-		LRK54_RS17075	0.80	+0.7
3,730,149	+				-0.1
3,730,149	+				-0.4
3,730,149	+				-0.3
3,730,149	+				-0.6
3,730,149	+				-0.1
3,730,149	+				+0.3
3,730,149	+				+0.2
3,730,149	+				-0.2
3,730,149	+				+0.4
3,730,149	+				+2.2
3,730,149	+				-0.2
3,730,149	+				-1.0
3,730,149	+				-0.3
3,730,149	+				+0.7
3,730,149	+				-0.8
3,730,149	+				+0.6
3,730,149	+				-2.0
3,730,149	+				-2.0
3,730,149	+				-0.4
3,730,149	+				-0.0
3,730,149	+				-1.3
3,730,149	+				+0.2
3,730,149	+				-1.2
3,730,149	+				-0.2
3,730,149	+				-1.4
3,730,149	+				-0.7
3,730,149	+				+0.1
3,730,150	-				+0.9
3,730,150	-				+0.3
3,730,150	-				-0.3
3,730,150	-				-0.8
3,730,150	-				-0.6
3,730,150	-				-0.6
3,730,150	-				+0.2
3,730,150	-				-2.2
3,730,150	-				-2.1
3,730,150	-				+2.2
3,730,150	-				-0.1
3,730,150	-				-0.2
3,730,150	-				+0.5
3,730,150	-				+0.7
3,730,150	-				-1.4
3,730,150	-				-1.9
3,730,150	-				-0.1
3,730,150	-				+0.3
3,730,150	-				+1.1
3,730,150	-				-1.6
3,730,150	-				+3.2
3,730,150	-				+0.8
3,730,150	-				-0.3
3,730,150	-				+0.0
3,730,150	-				-0.9
3,730,150	-				+0.8
3,730,150	-				-1.2
3,730,150	-				-1.5
3,730,150	-				+0.5
3,730,150	-				-0.1
3,730,150	-				+1.0
3,730,150	-				+0.2
3,730,150	-				+0.0
3,730,150	-				-0.6
3,730,150	-				-0.4
3,730,177	-				+0.1
3,730,177	-				-0.4
3,730,305	+		LRK54_RS17080	0.45	-0.8
3,730,306	-		LRK54_RS17080	0.45	+0.3
3,730,306	-		LRK54_RS17080	0.45	-0.8
3,730,306	-		LRK54_RS17080	0.45	-0.3
3,730,306	-		LRK54_RS17080	0.45	-0.7
3,730,529	+				+0.2
3,730,529	+				-1.3
3,730,529	+				+0.3
3,730,529	+				+0.2
3,730,529	+				+1.6
3,730,529	+				+0.5
3,730,529	+				+0.5
3,730,529	+				+0.1
3,730,529	+				+2.2
3,730,529	+				+0.1
3,730,529	+				+0.6
3,730,529	+				+1.8
3,730,529	+				+0.7
3,730,529	+				+0.5
3,730,529	+				-3.2
3,730,529	+				-0.5
3,730,529	+				+1.6
3,730,529	+				+0.4
3,730,529	+				+1.5
3,730,529	+				-1.3
3,730,529	+				+3.2
3,730,529	+				+1.0
3,730,529	+				+0.2
3,730,529	+				+1.6
3,730,529	+				+1.6
3,730,529	+				-0.9
3,730,529	+				+0.1
3,730,529	+				+0.0
3,730,529	+				-0.5
3,730,529	+				-0.9
3,730,529	+				-0.9
3,730,530	-				-0.8
3,730,530	-				+0.0
3,730,530	-				-0.6
3,730,530	-				-2.0
3,730,530	-				-2.1
3,730,530	-				-0.2
3,730,530	-				+0.8
3,730,530	-				+0.9
3,730,530	-				-0.3
3,730,530	-				-1.5
3,730,530	-				+0.8
3,730,530	-				-0.4
3,730,530	-				-1.1
3,730,530	-				+1.2
3,730,530	-				+1.9
3,730,530	-				+1.7
3,730,530	-				+0.1
3,730,530	-				-0.3
3,730,530	-				+0.5
3,730,530	-				-0.7
3,730,530	-				+0.2
3,730,530	-				-0.8
3,730,530	-				-0.1
3,730,530	-				+0.4
3,730,530	-				+0.6
3,730,530	-				-1.5
3,730,530	-				+2.0
3,730,530	-				+0.1
3,730,530	-				-0.2
3,730,530	-				+0.3
3,730,530	-				+1.0
3,730,530	-				-2.3
3,730,530	-				+1.0
3,730,532	+				-0.0
3,730,533	-				+0.8
3,730,570	+				-2.3
3,730,570	+				+0.0
3,730,570	+				-1.2
3,730,570	+				-0.5
3,730,570	+				-1.0
3,730,570	+				-0.3
3,730,570	+				-0.6
3,730,570	+				-0.8
3,730,571	-				+0.3
3,730,571	-				+1.1
3,730,571	-				-0.2
3,730,576	+				-0.7
3,730,577	-				+0.0
3,730,577	-				-0.0
3,730,577	-				+0.9
3,730,577	-				+0.2
3,730,682	+				-0.4
3,730,682	+				+1.7
3,730,682	+				+0.6
3,730,682	+				-2.0
3,730,682	+				+0.4
3,730,683	-				+1.0
3,730,683	-				+0.7
3,730,683	-				+2.0
3,730,683	-				-0.3
3,730,683	-				-0.9
3,730,683	-				+2.0
3,730,739	-				-0.9