Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08070

Experiment: planktonic; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM;
1,767,258	+		LRK54_RS08065	0.39	-0.1
1,767,259	-		LRK54_RS08065	0.39	-0.6
1,767,271	+		LRK54_RS08065	0.40	-0.1
1,767,272	-		LRK54_RS08065	0.40	-1.2
1,767,272	-		LRK54_RS08065	0.40	-2.0
1,767,272	-		LRK54_RS08065	0.40	+0.1
1,767,272	-		LRK54_RS08065	0.40	-1.2
1,767,347	+		LRK54_RS08065	0.46	+0.4
1,767,468	+		LRK54_RS08065	0.55	+0.3
1,767,468	+		LRK54_RS08065	0.55	-1.2
1,767,468	+		LRK54_RS08065	0.55	+1.2
1,767,468	+		LRK54_RS08065	0.55	-0.7
1,767,468	+		LRK54_RS08065	0.55	-2.5
1,767,469	-		LRK54_RS08065	0.55	-0.1
1,767,469	-		LRK54_RS08065	0.55	+0.4
1,767,469	-		LRK54_RS08065	0.55	+0.4
1,767,469	-		LRK54_RS08065	0.55	-1.0
1,767,469	-		LRK54_RS08065	0.55	+0.5
1,767,469	-		LRK54_RS08065	0.55	+0.7
1,767,469	-		LRK54_RS08065	0.55	-0.2
1,767,469	-		LRK54_RS08065	0.55	-1.7
1,767,585	+		LRK54_RS08065	0.63	-0.3
1,767,585	+		LRK54_RS08065	0.63	-1.5
1,767,585	+		LRK54_RS08065	0.63	+1.4
1,767,586	-		LRK54_RS08065	0.63	-0.6
1,767,702	-		LRK54_RS08065	0.72	-0.6
1,767,839	+		LRK54_RS08065	0.82	+0.1
1,767,839	+		LRK54_RS08065	0.82	-0.6
1,767,839	+		LRK54_RS08065	0.82	-0.3
1,767,839	+		LRK54_RS08065	0.82	+0.3
1,767,839	+		LRK54_RS08065	0.82	+0.4
1,767,840	-		LRK54_RS08065	0.82	-0.6
1,767,840	-		LRK54_RS08065	0.82	+0.4
1,767,840	-		LRK54_RS08065	0.82	-0.0
1,767,840	-		LRK54_RS08065	0.82	+0.2
1,767,840	-		LRK54_RS08065	0.82	-2.5
1,767,929	+		LRK54_RS08065	0.88	-0.9
1,767,929	+		LRK54_RS08065	0.88	+0.5
1,767,929	+		LRK54_RS08065	0.88	-1.9
1,767,929	+		LRK54_RS08065	0.88	-1.4
1,767,930	-		LRK54_RS08065	0.88	+1.0
1,767,930	-		LRK54_RS08065	0.88	+0.4
1,767,930	-		LRK54_RS08065	0.88	+3.4
1,767,930	-		LRK54_RS08065	0.88	-1.3
1,767,930	-		LRK54_RS08065	0.88	+0.4
1,767,930	-		LRK54_RS08065	0.88	-2.7
1,768,031	+				-0.7
1,768,032	-				-1.0
1,768,032	-				-0.6
1,768,090	+				+0.4
1,768,090	+				-0.1
1,768,091	-				-2.1
1,768,091	-				-0.3
1,768,091	-				-0.8
1,768,166	+				+0.2
1,768,167	-				-2.1
1,768,250	+		LRK54_RS08070	0.17	+1.3
1,768,250	+		LRK54_RS08070	0.17	+1.8
1,768,250	+		LRK54_RS08070	0.17	-1.2
1,768,250	+		LRK54_RS08070	0.17	+0.9
1,768,250	+		LRK54_RS08070	0.17	+0.3
1,768,250	+		LRK54_RS08070	0.17	+0.5
1,768,250	+		LRK54_RS08070	0.17	-0.6
1,768,250	+		LRK54_RS08070	0.17	+1.1
1,768,250	+		LRK54_RS08070	0.17	-0.8
1,768,250	+		LRK54_RS08070	0.17	+1.2
1,768,250	+		LRK54_RS08070	0.17	-0.1
1,768,250	+		LRK54_RS08070	0.17	-1.4
1,768,250	+		LRK54_RS08070	0.17	-0.2
1,768,250	+		LRK54_RS08070	0.17	-1.0
1,768,251	-		LRK54_RS08070	0.18	+0.5
1,768,251	-		LRK54_RS08070	0.18	+0.9
1,768,251	-		LRK54_RS08070	0.18	-1.4
1,768,251	-		LRK54_RS08070	0.18	-1.4
1,768,251	-		LRK54_RS08070	0.18	+1.2
1,768,251	-		LRK54_RS08070	0.18	-0.7
1,768,251	-		LRK54_RS08070	0.18	-0.6
1,768,251	-		LRK54_RS08070	0.18	-0.6
1,768,251	-		LRK54_RS08070	0.18	-1.1
1,768,251	-		LRK54_RS08070	0.18	-2.3
1,768,251	-		LRK54_RS08070	0.18	+0.4
1,768,251	-		LRK54_RS08070	0.18	-0.2
1,768,251	-		LRK54_RS08070	0.18	+1.1
1,768,251	-		LRK54_RS08070	0.18	+1.0
1,768,251	-		LRK54_RS08070	0.18	-0.7
1,768,251	-		LRK54_RS08070	0.18	-0.7
1,768,251	-		LRK54_RS08070	0.18	-0.6
1,768,251	-		LRK54_RS08070	0.18	+0.4
1,768,251	-		LRK54_RS08070	0.18	-0.3
1,768,251	-		LRK54_RS08070	0.18	+0.3
1,768,251	-		LRK54_RS08070	0.18	+0.3
1,768,451	+				+0.7
1,768,451	+				-0.3
1,768,451	+				+1.0
1,768,451	+				-0.0
1,768,451	+				-1.4
1,768,452	-				-0.2
1,768,519	+				-0.4
1,768,519	+				-0.3
1,768,520	-				-0.4
1,768,520	-				+0.7
1,768,589	-				+0.1
1,768,597	+				-1.1
1,768,597	+				+0.1
1,768,597	+				+0.0
1,768,597	+				+0.5
1,768,597	+				-2.1
1,768,597	+				-1.5
1,768,597	+				-0.1
1,768,597	+				-1.7
1,768,597	+				+0.4
1,768,597	+				+0.9
1,768,598	-				+0.0
1,768,598	-				-0.4
1,768,598	-				+0.6
1,768,598	-				-0.1
1,768,760	+		LRK54_RS08075	0.18	-1.4
1,768,760	+		LRK54_RS08075	0.18	-0.9
1,768,760	+		LRK54_RS08075	0.18	+0.2
1,768,760	+		LRK54_RS08075	0.18	+0.8
1,768,760	+		LRK54_RS08075	0.18	+0.1
1,768,761	-		LRK54_RS08075	0.18	+1.7
1,768,761	-		LRK54_RS08075	0.18	-0.7
1,768,761	-		LRK54_RS08075	0.18	-0.1
1,768,761	-		LRK54_RS08075	0.18	-0.0
1,768,889	+		LRK54_RS08075	0.42	-0.5
1,768,889	+		LRK54_RS08075	0.42	+0.0
1,768,889	+		LRK54_RS08075	0.42	-0.4
1,768,890	-		LRK54_RS08075	0.42	-0.7
1,768,890	-		LRK54_RS08075	0.42	-0.9
1,768,890	-		LRK54_RS08075	0.42	+2.0
1,769,096	+		LRK54_RS08075	0.81	-1.2
1,769,097	-		LRK54_RS08075	0.81	-0.2
1,769,097	-		LRK54_RS08075	0.81	-0.4
1,769,156	+				+0.2
1,769,165	+				+0.3