Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06740

Experiment: planktonic; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM;
1,447,892	+		LRK54_RS06730	0.83	+1.3
1,447,904	+		LRK54_RS06730	0.84	-0.7
1,447,904	+		LRK54_RS06730	0.84	+0.7
1,447,904	+		LRK54_RS06730	0.84	-0.4
1,447,904	+		LRK54_RS06730	0.84	+0.9
1,447,904	+		LRK54_RS06730	0.84	-0.1
1,447,904	+		LRK54_RS06730	0.84	-1.9
1,447,904	+				+1.3
1,447,904	+		LRK54_RS06730	0.84	-0.2
1,447,904	+		LRK54_RS06730	0.84	-1.2
1,447,904	+		LRK54_RS06730	0.84	+1.5
1,447,904	+		LRK54_RS06730	0.84	+2.1
1,447,904	+		LRK54_RS06730	0.84	-0.3
1,447,904	+		LRK54_RS06730	0.84	+2.5
1,447,905	-		LRK54_RS06730	0.84	-0.1
1,447,905	-		LRK54_RS06730	0.84	+2.0
1,447,905	-		LRK54_RS06730	0.84	+2.0
1,447,905	-		LRK54_RS06730	0.84	-0.3
1,447,905	-		LRK54_RS06730	0.84	-0.1
1,447,905	-		LRK54_RS06730	0.84	-0.7
1,447,905	-		LRK54_RS06730	0.84	-0.8
1,447,905	-		LRK54_RS06730	0.84	+0.2
1,447,905	-		LRK54_RS06730	0.84	-0.2
1,447,905	-		LRK54_RS06730	0.84	+0.3
1,447,905	-		LRK54_RS06730	0.84	+1.4
1,447,905	-		LRK54_RS06730	0.84	+0.3
1,447,905	-		LRK54_RS06730	0.84	+0.4
1,447,905	-		LRK54_RS06730	0.84	-0.6
1,447,905	-		LRK54_RS06730	0.84	-2.7
1,447,905	-		LRK54_RS06730	0.84	+0.2
1,447,905	-		LRK54_RS06730	0.84	+0.8
1,447,905	-		LRK54_RS06730	0.84	-0.5
1,447,955	+		LRK54_RS06730	0.88	-1.2
1,447,955	+		LRK54_RS06730	0.88	-0.6
1,447,956	-		LRK54_RS06730	0.88	+0.4
1,447,956	-		LRK54_RS06730	0.88	+0.5
1,447,956	-		LRK54_RS06730	0.88	+0.4
1,447,956	-		LRK54_RS06730	0.88	+0.9
1,447,964	+		LRK54_RS06730	0.89	-0.2
1,447,964	+		LRK54_RS06730	0.89	-1.2
1,447,964	+		LRK54_RS06730	0.89	+0.2
1,447,964	+		LRK54_RS06730	0.89	+1.1
1,447,964	+		LRK54_RS06730	0.89	-0.6
1,447,964	+		LRK54_RS06730	0.89	-0.1
1,447,964	+				+1.1
1,447,964	+		LRK54_RS06730	0.89	+1.8
1,447,964	+		LRK54_RS06730	0.89	-0.1
1,447,965	-		LRK54_RS06730	0.89	+0.7
1,447,965	-		LRK54_RS06730	0.89	-0.6
1,447,965	-		LRK54_RS06730	0.89	-1.3
1,447,965	-		LRK54_RS06730	0.89	+0.9
1,447,965	-		LRK54_RS06730	0.89	-0.6
1,447,965	-		LRK54_RS06730	0.89	+1.5
1,447,965	-		LRK54_RS06730	0.89	-0.4
1,448,174	+				-0.8
1,448,174	+				+1.2
1,448,174	+				+0.9
1,448,174	+				-0.7
1,448,174	+				+0.3
1,448,174	+				-0.7
1,448,174	+				-1.1
1,448,174	+				+0.1
1,448,174	+				+0.3
1,448,174	+				-0.2
1,448,174	+				-1.6
1,448,174	+				-0.8
1,448,174	+				-0.0
1,448,174	+				+0.1
1,448,174	+				+3.1
1,448,174	+				-0.5
1,448,174	+				-1.2
1,448,174	+				-1.5
1,448,174	+				-1.2
1,448,174	+				-0.5
1,448,174	+				+0.2
1,448,174	+				+0.5
1,448,174	+				-1.8
1,448,174	+				-1.8
1,448,174	+				+0.5
1,448,174	+				-1.2
1,448,174	+				-0.8
1,448,174	+				-0.4
1,448,175	-				-2.7
1,448,175	-				-0.4
1,448,175	-				+1.6
1,448,175	-				+0.7
1,448,175	-				+0.4
1,448,175	-				-0.6
1,448,175	-				-0.5
1,448,175	-				-0.1
1,448,175	-				+0.3
1,448,175	-				-0.1
1,448,175	-				+0.2
1,448,175	-				+0.7
1,448,175	-				+0.1
1,448,175	-				-2.6
1,448,175	-				+0.0
1,448,175	-				-0.5
1,448,175	-				+0.5
1,448,175	-				-0.4
1,448,175	-				+0.5
1,448,175	-				-2.3
1,448,175	-				-0.6
1,448,175	-				+1.3
1,448,175	-				+0.2
1,448,175	-				+0.6
1,448,175	-				-0.4
1,448,175	-				+1.3
1,448,252	+		LRK54_RS06735	0.13	+1.2
1,448,252	+		LRK54_RS06735	0.13	-1.2
1,448,252	+		LRK54_RS06735	0.13	-0.3
1,448,252	+		LRK54_RS06735	0.13	+1.8
1,448,252	+		LRK54_RS06735	0.13	-0.8
1,448,252	+		LRK54_RS06735	0.13	-1.0
1,448,252	+		LRK54_RS06735	0.13	+2.3
1,448,252	+		LRK54_RS06735	0.13	-2.6
1,448,252	+		LRK54_RS06735	0.13	+1.3
1,448,253	-		LRK54_RS06735	0.13	-2.5
1,448,253	-		LRK54_RS06735	0.13	+0.7
1,448,253	-		LRK54_RS06735	0.13	+1.3
1,448,253	-		LRK54_RS06735	0.13	+0.5
1,448,253	-		LRK54_RS06735	0.13	-0.7
1,448,253	-		LRK54_RS06735	0.13	+0.2
1,448,465	+		LRK54_RS06735	0.49	+0.8
1,448,465	+		LRK54_RS06735	0.49	+0.3
1,448,465	+		LRK54_RS06735	0.49	-0.0
1,448,465	+		LRK54_RS06735	0.49	-0.2
1,448,465	+		LRK54_RS06735	0.49	+3.1
1,448,466	-		LRK54_RS06735	0.49	+0.9
1,448,466	-		LRK54_RS06735	0.49	-0.1
1,448,466	-		LRK54_RS06735	0.49	-0.7
1,448,466	-		LRK54_RS06735	0.49	+1.7
1,448,466	-		LRK54_RS06735	0.49	-0.7
1,448,466	-		LRK54_RS06735	0.49	-2.4
1,448,466	-		LRK54_RS06735	0.49	-0.5
1,448,466	-		LRK54_RS06735	0.49	-2.1
1,448,637	-		LRK54_RS06735	0.78	+0.1
1,448,637	-		LRK54_RS06735	0.78	+1.3
1,448,690	+		LRK54_RS06735	0.87	+1.4
1,448,690	+		LRK54_RS06735	0.87	-0.1
1,448,690	+		LRK54_RS06735	0.87	-0.6
1,448,690	+		LRK54_RS06735	0.87	-0.1
1,448,690	+		LRK54_RS06735	0.87	-0.6
1,448,690	+		LRK54_RS06735	0.87	-0.9
1,448,690	+		LRK54_RS06735	0.87	-2.2
1,448,690	+		LRK54_RS06735	0.87	-1.8
1,448,690	+		LRK54_RS06735	0.87	+0.9
1,448,690	+		LRK54_RS06735	0.87	+0.9
1,448,690	+		LRK54_RS06735	0.87	+1.3
1,448,690	+		LRK54_RS06735	0.87	+0.6
1,448,690	+		LRK54_RS06735	0.87	-1.6
1,448,690	+		LRK54_RS06735	0.87	+0.5
1,448,690	+		LRK54_RS06735	0.87	-0.4
1,448,690	+		LRK54_RS06735	0.87	-0.9
1,448,690	+		LRK54_RS06735	0.87	-0.8
1,448,690	+		LRK54_RS06735	0.87	-0.0
1,448,690	+		LRK54_RS06735	0.87	+0.7
1,448,690	+		LRK54_RS06735	0.87	+0.3
1,448,690	+		LRK54_RS06735	0.87	-0.0
1,448,690	+		LRK54_RS06735	0.87	-0.6
1,448,690	+		LRK54_RS06735	0.87	+0.8
1,448,690	+		LRK54_RS06735	0.87	-0.5
1,448,690	+		LRK54_RS06735	0.87	-1.7
1,448,691	-		LRK54_RS06735	0.87	+0.1
1,448,691	-		LRK54_RS06735	0.87	+0.4
1,448,691	-		LRK54_RS06735	0.87	+0.5
1,448,691	-		LRK54_RS06735	0.87	+0.1
1,448,691	-		LRK54_RS06735	0.87	-1.1
1,448,691	-		LRK54_RS06735	0.87	-0.6
1,448,691	-		LRK54_RS06735	0.87	-0.2
1,448,691	-		LRK54_RS06735	0.87	+0.2
1,448,691	-		LRK54_RS06735	0.87	+0.0
1,448,691	-		LRK54_RS06735	0.87	-0.3
1,448,691	-		LRK54_RS06735	0.87	+0.3
1,448,691	-		LRK54_RS06735	0.87	+0.7
1,448,691	-		LRK54_RS06735	0.87	-0.9
1,448,691	-		LRK54_RS06735	0.87	+0.6
1,448,691	-		LRK54_RS06735	0.87	-0.1
1,448,691	-		LRK54_RS06735	0.87	-0.3
1,448,691	-		LRK54_RS06735	0.87	-0.6
1,448,691	-		LRK54_RS06735	0.87	-1.7
1,448,691	-		LRK54_RS06735	0.87	+0.5
1,448,691	-		LRK54_RS06735	0.87	+0.1
1,448,691	-		LRK54_RS06735	0.87	+0.6
1,448,691	-		LRK54_RS06735	0.87	+0.1
1,448,691	-		LRK54_RS06735	0.87	+0.1
1,448,691	-		LRK54_RS06735	0.87	-0.4
1,448,691	-		LRK54_RS06735	0.87	+0.7
1,448,691	-		LRK54_RS06735	0.87	+0.3
1,448,750	+				+0.2
1,448,750	+				-0.2
1,448,750	+				-1.1
1,448,750	+				-0.4
1,448,750	+				-1.1
1,448,750	+				+0.5
1,448,750	+				-1.1
1,448,750	+				-1.0
1,448,750	+				-0.7
1,448,751	-				-0.4
1,448,751	-				-0.6
1,448,751	-				-0.1
1,448,751	-				-0.2
1,448,751	-				+0.2
1,448,751	-				-0.2
1,448,751	-				+0.6
1,448,751	-				+0.6
1,448,751	-				-0.2
1,448,751	-				-0.5
1,448,751	-				-1.0
1,448,751	-				-2.2
1,448,751	-				+0.8
1,448,751	-				+1.3
1,448,751	-				+0.5
1,448,751	-				+0.9
1,448,751	-				-0.9
1,448,751	-				+0.2
1,448,781	+				-1.4
1,448,781	+				+0.5
1,448,781	+				-0.1
1,448,781	+				-0.1
1,448,781	+				+0.5
1,448,781	+				-1.9
1,448,781	+				-0.1
1,448,781	+				-0.1
1,448,781	+				-2.3
1,448,781	+				-0.9
1,448,781	+				+1.3
1,448,781	+				-2.0
1,448,781	+				-0.5
1,448,781	+				+0.5
1,448,781	+				-2.4
1,448,782	-				+0.7
1,448,782	-				+1.1
1,448,782	-				+0.0
1,448,782	-				-0.7
1,448,782	-				+0.0
1,448,782	-				-1.6
1,448,782	-				-0.8
1,448,782	-				+0.6
1,448,782	-				-0.8
1,448,782	-				-0.4
1,448,782	-				-1.7
1,448,782	-				+0.5
1,448,782	-				-1.3
1,448,782	-				+0.2
1,448,782	-				-0.6
1,448,782	-				-0.4
1,448,782	-				-0.6
1,448,782	-				-1.8
1,448,782	-				+0.0
1,448,782	-				-1.6
1,448,782	-				+0.9
1,448,782	-				+0.1
1,448,782	-				+1.5
1,448,782	-				-1.6
1,448,782	-				-0.8
1,449,005	+		LRK54_RS06740	0.34	+0.7
1,449,005	+		LRK54_RS06740	0.34	+0.1
1,449,005	+		LRK54_RS06740	0.34	+0.8
1,449,005	+		LRK54_RS06740	0.34	-2.7
1,449,005	+		LRK54_RS06740	0.34	+0.2
1,449,005	+		LRK54_RS06740	0.34	-0.3
1,449,005	+		LRK54_RS06740	0.34	+1.1
1,449,005	+		LRK54_RS06740	0.34	-0.1
1,449,005	+		LRK54_RS06740	0.34	+2.0
1,449,006	-		LRK54_RS06740	0.34	-1.0
1,449,006	-		LRK54_RS06740	0.34	+0.1
1,449,006	-		LRK54_RS06740	0.34	+0.5
1,449,006	-		LRK54_RS06740	0.34	-1.5
1,449,006	-		LRK54_RS06740	0.34	+1.7
1,449,006	-		LRK54_RS06740	0.34	+0.6
1,449,116	+		LRK54_RS06740	0.53	-1.9
1,449,116	+		LRK54_RS06740	0.53	-0.0
1,449,117	-		LRK54_RS06740	0.53	-0.8
1,449,117	-		LRK54_RS06740	0.53	-2.4
1,449,117	-		LRK54_RS06740	0.53	-0.1
1,449,232	+		LRK54_RS06740	0.72	-0.9
1,449,232	+		LRK54_RS06740	0.72	-0.5
1,449,232	+		LRK54_RS06740	0.72	-0.3
1,449,232	+		LRK54_RS06740	0.72	+0.8
1,449,232	+		LRK54_RS06740	0.72	+0.1
1,449,232	+				+1.5
1,449,232	+		LRK54_RS06740	0.72	-0.5
1,449,233	-		LRK54_RS06740	0.72	+1.0
1,449,233	-		LRK54_RS06740	0.72	-0.4
1,449,233	-		LRK54_RS06740	0.72	+0.3
1,449,233	-		LRK54_RS06740	0.72	-0.9
1,449,233	-		LRK54_RS06740	0.72	+0.2
1,449,233	-		LRK54_RS06740	0.72	-0.1
1,449,233	-		LRK54_RS06740	0.72	-1.9
1,449,233	-		LRK54_RS06740	0.72	+0.0
1,449,233	-		LRK54_RS06740	0.72	-1.1
1,449,233	-		LRK54_RS06740	0.72	+0.1
1,449,287	+		LRK54_RS06740	0.81	+2.0
1,449,287	+		LRK54_RS06740	0.81	-1.7
1,449,287	+		LRK54_RS06740	0.81	-0.7
1,449,287	+		LRK54_RS06740	0.81	+0.5
1,449,287	+		LRK54_RS06740	0.81	-2.1
1,449,287	+		LRK54_RS06740	0.81	-0.2
1,449,287	+		LRK54_RS06740	0.81	-1.7
1,449,287	+		LRK54_RS06740	0.81	-1.8
1,449,287	+		LRK54_RS06740	0.81	-0.7
1,449,287	+		LRK54_RS06740	0.81	+0.9
1,449,287	+		LRK54_RS06740	0.81	-0.7
1,449,287	+		LRK54_RS06740	0.81	+0.5
1,449,287	+		LRK54_RS06740	0.81	-0.0
1,449,287	+		LRK54_RS06740	0.81	+0.2
1,449,287	+		LRK54_RS06740	0.81	+0.7
1,449,288	-		LRK54_RS06740	0.82	-1.1
1,449,288	-		LRK54_RS06740	0.82	-0.5
1,449,288	-		LRK54_RS06740	0.82	+1.3
1,449,288	-		LRK54_RS06740	0.82	-2.9
1,449,288	-		LRK54_RS06740	0.82	-0.1
1,449,288	-		LRK54_RS06740	0.82	+0.7
1,449,288	-		LRK54_RS06740	0.82	+0.3
1,449,288	-		LRK54_RS06740	0.82	+0.8
1,449,288	-		LRK54_RS06740	0.82	+0.6
1,449,288	-		LRK54_RS06740	0.82	-0.3
1,449,288	-		LRK54_RS06740	0.82	+0.1
1,449,288	-		LRK54_RS06740	0.82	+0.5
1,449,288	-		LRK54_RS06740	0.82	+0.7
1,449,288	-		LRK54_RS06740	0.82	+0.2
1,449,400	+				-0.5
1,449,400	+				+1.7
1,449,447	+				+0.9
1,449,447	+				-0.7
1,449,447	+				+0.1
1,449,447	+				+0.3
1,449,447	+				+0.4
1,449,447	+				-1.1
1,449,447	+				-0.5
1,449,447	+				+0.9
1,449,447	+				-0.9
1,449,447	+				+1.1
1,449,447	+				+0.8
1,449,447	+				-0.0
1,449,448	-				-1.2
1,449,448	-				-1.4
1,449,448	-				+0.2
1,449,448	-				-0.4
1,449,448	-				-0.7
1,449,448	-				-2.4
1,449,448	-				+0.3
1,449,448	-				+1.7
1,449,448	-				-0.1
1,449,448	-				-0.7
1,449,449	+				-0.7
1,449,449	+				-1.4
1,449,449	+				-3.0
1,449,449	+				-0.7
1,449,449	+				+0.3
1,449,449	+				-1.0
1,449,449	+				-1.6
1,449,449	+				+0.2
1,449,449	+				-0.6
1,449,449	+				-0.5
1,449,449	+				+0.3
1,449,449	+				+1.1
1,449,449	+				-1.5
1,449,449	+				-0.7
1,449,449	+				-2.1
1,449,449	+				-1.1
1,449,449	+				-0.1
1,449,449	+				+1.2
1,449,449	+				+0.6
1,449,449	+				-1.8
1,449,449	+				+0.4
1,449,449	+				-1.7
1,449,449	+				+0.9
1,449,449	+				+0.4
1,449,449	+				-1.0
1,449,450	-				+0.2
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1,450,243	+		LRK54_RS06745	0.72	+1.5
1,450,243	+		LRK54_RS06745	0.72	-2.4