Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13655

Experiment: planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,052,167	+				-1.0
3,052,167	+				+0.4
3,052,167	+				+1.2
3,052,168	-				-0.9
3,052,168	-				+0.2
3,052,199	+				+0.1
3,052,199	+				-1.4
3,052,199	+				-1.2
3,052,209	+				-0.2
3,052,209	+				+0.2
3,052,209	+				+0.1
3,052,210	-				-1.4
3,052,222	+				-0.7
3,052,222	+				-1.8
3,052,222	+				+0.1
3,052,222	+				+0.2
3,052,222	+				-0.3
3,052,222	+				-0.9
3,052,222	+				+3.6
3,052,222	+				-0.0
3,052,222	+				-1.5
3,052,223	-				-0.9
3,052,223	-				+0.3
3,052,223	-				-0.2
3,052,223	-				+1.6
3,052,223	-				+0.9
3,052,223	-				-0.3
3,052,223	-				+1.3
3,052,223	-				-0.2
3,052,223	-				-0.0
3,052,288	+		LRK54_RS13650	0.14	+0.1
3,052,288	+		LRK54_RS13650	0.14	-1.0
3,052,288	+		LRK54_RS13650	0.14	+0.8
3,052,288	+		LRK54_RS13650	0.14	+0.3
3,052,289	-		LRK54_RS13650	0.14	-1.6
3,052,289	-		LRK54_RS13650	0.14	+0.5
3,052,363	+		LRK54_RS13650	0.28	-0.6
3,052,363	+		LRK54_RS13650	0.28	-3.2
3,052,363	+		LRK54_RS13650	0.28	-0.5
3,052,363	+		LRK54_RS13650	0.28	-0.6
3,052,364	-		LRK54_RS13650	0.29	+0.1
3,052,364	-		LRK54_RS13650	0.29	+0.0
3,052,364	-		LRK54_RS13650	0.29	+0.3
3,052,364	-		LRK54_RS13650	0.29	-1.0
3,052,364	-		LRK54_RS13650	0.29	-0.7
3,052,447	+		LRK54_RS13650	0.45	-0.2
3,052,447	+		LRK54_RS13650	0.45	-0.8
3,052,448	-		LRK54_RS13650	0.45	-0.1
3,052,448	-		LRK54_RS13650	0.45	-0.7
3,052,591	+		LRK54_RS13650	0.73	-2.3
3,052,906	+				-0.4
3,052,906	+				-1.7
3,052,906	+				-1.1
3,052,906	+				+0.2
3,052,907	-				+0.6
3,052,907	-				-1.5
3,052,907	-				-1.3
3,052,907	-				+1.2
3,052,907	-				+0.6
3,052,907	-				-0.7
3,052,907	-				-0.4
3,053,069	+		LRK54_RS13655	0.19	-2.0
3,053,069	+		LRK54_RS13655	0.19	-2.0
3,053,069	+		LRK54_RS13655	0.19	-0.1
3,053,069	+		LRK54_RS13655	0.19	-2.0
3,053,070	-		LRK54_RS13655	0.19	+2.2
3,053,070	-		LRK54_RS13655	0.19	+0.2
3,053,070	-		LRK54_RS13655	0.19	+0.0
3,053,070	-		LRK54_RS13655	0.19	-2.2
3,053,070	-		LRK54_RS13655	0.19	-2.0
3,053,070	-		LRK54_RS13655	0.19	-0.4
3,053,070	-		LRK54_RS13655	0.19	+1.9
3,053,119	+		LRK54_RS13655	0.22	-0.5
3,053,119	+		LRK54_RS13655	0.22	-1.8
3,053,119	+		LRK54_RS13655	0.22	-0.3
3,053,119	+		LRK54_RS13655	0.22	+0.9
3,053,119	+		LRK54_RS13655	0.22	-1.0
3,053,119	+		LRK54_RS13655	0.22	-1.0
3,053,119	+		LRK54_RS13655	0.22	-0.9
3,053,119	+		LRK54_RS13655	0.22	-0.8
3,053,120	-		LRK54_RS13655	0.22	-0.6
3,053,120	-		LRK54_RS13655	0.22	-0.1
3,053,120	-		LRK54_RS13655	0.22	-1.9
3,053,120	-		LRK54_RS13655	0.22	-1.1
3,053,120	-		LRK54_RS13655	0.22	-0.0
3,053,120	-		LRK54_RS13655	0.22	-3.3
3,053,120	-		LRK54_RS13655	0.22	-1.3
3,053,120	-		LRK54_RS13655	0.22	-1.5
3,053,128	+		LRK54_RS13655	0.22	+0.6
3,053,129	-		LRK54_RS13655	0.22	-0.1
3,053,129	-		LRK54_RS13655	0.22	+1.3
3,053,129	-		LRK54_RS13655	0.22	+1.2
3,053,149	+		LRK54_RS13655	0.24	+0.1
3,053,149	+		LRK54_RS13655	0.24	-0.9
3,053,149	+		LRK54_RS13655	0.24	-0.4
3,053,150	-		LRK54_RS13655	0.24	-2.6
3,053,150	-		LRK54_RS13655	0.24	-0.8
3,053,150	-		LRK54_RS13655	0.24	-1.2
3,053,150	-		LRK54_RS13655	0.24	-1.4
3,053,173	+		LRK54_RS13655	0.25	+1.0
3,053,173	+		LRK54_RS13655	0.25	-1.2
3,053,173	+		LRK54_RS13655	0.25	-1.8
3,053,173	+		LRK54_RS13655	0.25	+0.2
3,053,173	+		LRK54_RS13655	0.25	-0.6
3,053,173	+		LRK54_RS13655	0.25	-0.3
3,053,173	+		LRK54_RS13655	0.25	-1.3
3,053,173	+		LRK54_RS13655	0.25	-1.7
3,053,173	+		LRK54_RS13655	0.25	-1.1
3,053,174	-		LRK54_RS13655	0.25	-1.9
3,053,174	-		LRK54_RS13655	0.25	-0.5
3,053,174	-		LRK54_RS13655	0.25	+0.9
3,053,174	-		LRK54_RS13655	0.25	-2.0
3,053,174	-		LRK54_RS13655	0.25	-1.1
3,053,174	-		LRK54_RS13655	0.25	-1.7
3,053,174	-		LRK54_RS13655	0.25	+0.1
3,053,174	-		LRK54_RS13655	0.25	-0.1
3,053,174	-		LRK54_RS13655	0.25	+1.9
3,053,174	-		LRK54_RS13655	0.25	-1.2
3,053,174	-		LRK54_RS13655	0.25	-0.1
3,053,305	+		LRK54_RS13655	0.33	+1.3
3,053,305	+		LRK54_RS13655	0.33	+1.9
3,053,305	+		LRK54_RS13655	0.33	+1.2
3,053,305	+		LRK54_RS13655	0.33	-1.6
3,053,305	+		LRK54_RS13655	0.33	-0.9
3,053,306	-		LRK54_RS13655	0.33	+1.3
3,053,306	-		LRK54_RS13655	0.33	-0.2
3,053,306	-		LRK54_RS13655	0.33	-0.6
3,053,306	-		LRK54_RS13655	0.33	-1.1
3,053,326	+		LRK54_RS13655	0.34	-0.4
3,053,327	-		LRK54_RS13655	0.34	+0.4
3,053,327	-		LRK54_RS13655	0.34	+0.3
3,054,399	-				+0.4
3,054,570	+		LRK54_RS13660	0.12	-0.1
3,054,570	+		LRK54_RS13660	0.12	-1.7
3,054,570	+		LRK54_RS13660	0.12	+0.2
3,054,570	+		LRK54_RS13660	0.12	-0.1
3,054,571	-		LRK54_RS13660	0.12	-3.0
3,054,571	-		LRK54_RS13660	0.12	-0.3
3,054,571	-		LRK54_RS13660	0.12	-1.2
3,054,672	+		LRK54_RS13660	0.23	-1.9
3,054,771	+		LRK54_RS13660	0.34	-1.7
3,054,771	+		LRK54_RS13660	0.34	-1.0
3,054,771	+		LRK54_RS13660	0.34	-0.5
3,054,772	-		LRK54_RS13660	0.34	-0.1
3,054,772	-		LRK54_RS13660	0.34	-1.4
3,054,772	-		LRK54_RS13660	0.34	-1.0
3,054,838	+		LRK54_RS13660	0.42	-0.2
3,054,838	+		LRK54_RS13660	0.42	-0.6
3,054,839	-		LRK54_RS13660	0.42	+0.2
3,054,879	+		LRK54_RS13660	0.46	-0.4
3,054,879	+		LRK54_RS13660	0.46	-1.3
3,054,879	+		LRK54_RS13660	0.46	-0.7
3,054,879	+		LRK54_RS13660	0.46	-1.4
3,054,880	-		LRK54_RS13660	0.47	-0.6
3,054,880	-		LRK54_RS13660	0.47	+0.6
3,054,880	-		LRK54_RS13660	0.47	-0.5
3,054,880	-		LRK54_RS13660	0.47	+0.0
3,054,999	+		LRK54_RS13660	0.60	+0.6
3,054,999	+		LRK54_RS13660	0.60	+0.5
3,055,000	-		LRK54_RS13660	0.60	+0.1
3,055,000	-		LRK54_RS13660	0.60	-1.6
3,055,000	-		LRK54_RS13660	0.60	+1.3
3,055,071	+		LRK54_RS13660	0.68	+0.1
3,055,071	+		LRK54_RS13660	0.68	-0.0
3,055,071	+		LRK54_RS13660	0.68	+1.9
3,055,071	+		LRK54_RS13660	0.68	-0.2
3,055,072	-		LRK54_RS13660	0.68	-1.2
3,055,197	+		LRK54_RS13660	0.82	-1.2
3,055,197	+		LRK54_RS13660	0.82	-1.6
3,055,197	+		LRK54_RS13660	0.82	-1.8
3,055,197	+		LRK54_RS13660	0.82	-0.0
3,055,197	+		LRK54_RS13660	0.82	-0.6
3,055,197	+		LRK54_RS13660	0.82	-0.1
3,055,197	+		LRK54_RS13660	0.82	+1.5
3,055,197	+		LRK54_RS13660	0.82	-0.9
3,055,197	+		LRK54_RS13660	0.82	-1.1
3,055,197	+		LRK54_RS13660	0.82	-0.9
3,055,197	+		LRK54_RS13660	0.82	-0.6
3,055,197	+		LRK54_RS13660	0.82	-1.6
3,055,198	-		LRK54_RS13660	0.82	-0.6
3,055,198	-		LRK54_RS13660	0.82	+1.8
3,055,198	-		LRK54_RS13660	0.82	-0.6
3,055,198	-		LRK54_RS13660	0.82	+0.0
3,055,198	-		LRK54_RS13660	0.82	-0.4
3,055,198	-		LRK54_RS13660	0.82	+0.0
3,055,198	-		LRK54_RS13660	0.82	+0.6
3,055,198	-		LRK54_RS13660	0.82	-0.4
3,055,198	-		LRK54_RS13660	0.82	-0.3
3,055,198	-		LRK54_RS13660	0.82	-2.3
3,055,198	-		LRK54_RS13660	0.82	+0.5
3,055,198	-		LRK54_RS13660	0.82	+0.9
3,055,236	+		LRK54_RS13660	0.87	-1.3
3,055,237	-		LRK54_RS13660	0.87	+2.9
3,055,237	-		LRK54_RS13660	0.87	-0.0
3,055,298	+				+0.3
3,055,298	+				-0.4
3,055,299	-				+0.4
3,055,299	-				-0.7
3,055,299	-				+0.6
3,055,335	+				+1.0
3,055,378	+				+0.3
3,055,379	-				-2.0
3,055,379	-				+0.3