Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16255

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,576,213	+		LRK54_RS16250	0.58	-0.2
3,576,213	+		LRK54_RS16250	0.58	-0.4
3,576,213	+		LRK54_RS16250	0.58	+0.5
3,576,214	-		LRK54_RS16250	0.58	+0.2
3,576,214	-		LRK54_RS16250	0.58	+0.3
3,576,214	-		LRK54_RS16250	0.58	+1.1
3,576,214	-		LRK54_RS16250	0.58	-0.1
3,576,214	-		LRK54_RS16250	0.58	-0.7
3,576,214	-		LRK54_RS16250	0.58	+1.9
3,576,214	-		LRK54_RS16250	0.58	-0.9
3,576,214	-		LRK54_RS16250	0.58	-0.4
3,576,214	-		LRK54_RS16250	0.58	+0.3
3,576,214	-		LRK54_RS16250	0.58	-0.2
3,576,214	-		LRK54_RS16250	0.58	-0.0
3,576,381	+		LRK54_RS16250	0.65	-0.9
3,576,381	+		LRK54_RS16250	0.65	+0.5
3,576,382	-		LRK54_RS16250	0.65	-1.0
3,576,382	-		LRK54_RS16250	0.65	+0.2
3,576,489	+		LRK54_RS16250	0.70	+0.9
3,576,489	+		LRK54_RS16250	0.70	-1.2
3,576,489	+		LRK54_RS16250	0.70	+0.4
3,576,489	+		LRK54_RS16250	0.70	-1.5
3,576,489	+		LRK54_RS16250	0.70	+1.3
3,576,489	+		LRK54_RS16250	0.70	+0.0
3,576,490	-		LRK54_RS16250	0.70	-2.7
3,576,490	-		LRK54_RS16250	0.70	+0.4
3,576,490	-		LRK54_RS16250	0.70	-0.8
3,576,490	-		LRK54_RS16250	0.70	+1.2
3,576,490	-		LRK54_RS16250	0.70	-0.6
3,576,615	+		LRK54_RS16250	0.75	+0.3
3,576,615	+		LRK54_RS16250	0.75	-1.8
3,576,615	+		LRK54_RS16250	0.75	+0.7
3,576,615	+		LRK54_RS16250	0.75	+0.1
3,576,615	+		LRK54_RS16250	0.75	+0.9
3,576,615	+		LRK54_RS16250	0.75	+0.5
3,576,615	+				+3.9
3,576,615	+		LRK54_RS16250	0.75	-3.0
3,576,615	+		LRK54_RS16250	0.75	+5.5
3,576,615	+		LRK54_RS16250	0.75	+0.5
3,576,615	+		LRK54_RS16250	0.75	+1.3
3,576,615	+		LRK54_RS16250	0.75	+0.3
3,576,615	+		LRK54_RS16250	0.75	+1.5
3,576,615	+		LRK54_RS16250	0.75	+0.3
3,576,615	+		LRK54_RS16250	0.75	-0.0
3,576,615	+		LRK54_RS16250	0.75	+0.1
3,576,615	+		LRK54_RS16250	0.75	-1.3
3,576,615	+		LRK54_RS16250	0.75	-2.0
3,576,616	-		LRK54_RS16250	0.75	-0.2
3,576,616	-		LRK54_RS16250	0.75	+0.9
3,576,616	-		LRK54_RS16250	0.75	+1.5
3,576,616	-		LRK54_RS16250	0.75	-0.4
3,576,616	-		LRK54_RS16250	0.75	+0.2
3,576,616	-		LRK54_RS16250	0.75	-1.0
3,576,616	-		LRK54_RS16250	0.75	-0.6
3,576,616	-		LRK54_RS16250	0.75	+0.2
3,576,616	-		LRK54_RS16250	0.75	-1.1
3,576,616	-		LRK54_RS16250	0.75	+0.8
3,576,616	-		LRK54_RS16250	0.75	-1.2
3,576,616	-		LRK54_RS16250	0.75	+1.0
3,576,616	-		LRK54_RS16250	0.75	-0.3
3,576,711	+		LRK54_RS16250	0.79	-1.6
3,576,711	+		LRK54_RS16250	0.79	-0.6
3,576,711	+		LRK54_RS16250	0.79	+2.3
3,576,711	+		LRK54_RS16250	0.79	-0.7
3,576,711	+		LRK54_RS16250	0.79	-0.0
3,576,711	+		LRK54_RS16250	0.79	-1.0
3,576,712	-		LRK54_RS16250	0.79	+0.2
3,576,712	-		LRK54_RS16250	0.79	-1.6
3,576,712	-		LRK54_RS16250	0.79	+0.3
3,576,712	-		LRK54_RS16250	0.79	-1.5
3,576,712	-		LRK54_RS16250	0.79	-2.2
3,576,712	-		LRK54_RS16250	0.79	+2.5
3,576,780	+		LRK54_RS16250	0.82	+1.9
3,576,780	+		LRK54_RS16250	0.82	+0.3
3,576,780	+		LRK54_RS16250	0.82	+0.6
3,576,780	+		LRK54_RS16250	0.82	+1.1
3,576,780	+		LRK54_RS16250	0.82	-0.6
3,576,780	+		LRK54_RS16250	0.82	-0.4
3,576,781	-		LRK54_RS16250	0.82	+0.2
3,576,781	-		LRK54_RS16250	0.82	+0.1
3,576,781	-		LRK54_RS16250	0.82	-1.3
3,576,781	-		LRK54_RS16250	0.82	+1.9
3,576,781	-		LRK54_RS16250	0.82	-0.6
3,576,781	-		LRK54_RS16250	0.82	+2.9
3,576,781	-		LRK54_RS16250	0.82	+0.1
3,576,781	-		LRK54_RS16250	0.82	-1.3
3,576,781	-		LRK54_RS16250	0.82	-0.2
3,576,781	-		LRK54_RS16250	0.82	-0.7
3,576,781	-		LRK54_RS16250	0.82	-0.3
3,576,781	-		LRK54_RS16250	0.82	+1.9
3,576,781	-		LRK54_RS16250	0.82	+0.4
3,576,781	-		LRK54_RS16250	0.82	-0.2
3,576,861	+		LRK54_RS16250	0.86	+0.2
3,576,861	+		LRK54_RS16250	0.86	+1.4
3,576,861	+		LRK54_RS16250	0.86	-0.2
3,576,861	+		LRK54_RS16250	0.86	-2.2
3,576,862	-		LRK54_RS16250	0.86	+1.0
3,576,862	-		LRK54_RS16250	0.86	-1.2
3,576,862	-		LRK54_RS16250	0.86	-2.1
3,576,862	-		LRK54_RS16250	0.86	+0.5
3,576,862	-		LRK54_RS16250	0.86	+1.9
3,576,862	-		LRK54_RS16250	0.86	+0.2
3,576,862	-		LRK54_RS16250	0.86	+0.1
3,576,862	-		LRK54_RS16250	0.86	-0.3
3,577,092	+				-0.5
3,577,092	+				-2.1
3,577,092	+				+0.5
3,577,092	+				-1.1
3,577,092	+				-1.6
3,577,092	+				-1.4
3,577,092	+				-0.4
3,577,092	+				-0.0
3,577,092	+				-1.2
3,577,092	+				-0.6
3,577,092	+				+0.4
3,577,092	+				-0.1
3,577,093	-				+1.1
3,577,093	-				+2.9
3,577,093	-				-0.8
3,577,093	-				+1.9
3,577,093	-				+1.2
3,577,093	-				-0.5
3,577,093	-				-1.3
3,577,093	-				-0.9
3,577,183	+				-0.5
3,577,184	-				+0.7
3,577,184	-				+1.1
3,577,184	-				-1.0
3,578,242	+		LRK54_RS16255	0.86	+0.9
3,578,242	+		LRK54_RS16255	0.86	-1.6
3,578,242	+		LRK54_RS16255	0.86	-0.7
3,578,243	-		LRK54_RS16255	0.86	+0.3
3,578,354	-				-0.4
3,578,468	-				+0.1
3,578,468	-				+0.2
3,578,468	-				-0.1
3,578,630	+		LRK54_RS16260	0.24	+2.5
3,578,630	+		LRK54_RS16260	0.24	-0.3
3,578,630	+		LRK54_RS16260	0.24	-0.4
3,578,630	+		LRK54_RS16260	0.24	-0.5
3,578,630	+		LRK54_RS16260	0.24	+1.1
3,578,630	+		LRK54_RS16260	0.24	+2.3
3,578,630	+		LRK54_RS16260	0.24	+1.5
3,578,630	+		LRK54_RS16260	0.24	+0.5
3,578,630	+		LRK54_RS16260	0.24	+1.3
3,578,630	+		LRK54_RS16260	0.24	-0.1
3,578,631	-		LRK54_RS16260	0.25	+0.6
3,578,631	-		LRK54_RS16260	0.25	-2.0
3,578,631	-		LRK54_RS16260	0.25	+0.7
3,578,631	-		LRK54_RS16260	0.25	-2.4
3,578,631	-		LRK54_RS16260	0.25	+0.1
3,578,631	-		LRK54_RS16260	0.25	-0.7
3,578,631	-		LRK54_RS16260	0.25	-0.9
3,578,631	-		LRK54_RS16260	0.25	-0.5
3,578,631	-		LRK54_RS16260	0.25	+1.2
3,578,631	-		LRK54_RS16260	0.25	+2.9
3,578,631	-		LRK54_RS16260	0.25	-1.1
3,578,631	-		LRK54_RS16260	0.25	+1.4
3,578,631	-		LRK54_RS16260	0.25	-0.2
3,578,631	-		LRK54_RS16260	0.25	-0.1
3,578,631	-		LRK54_RS16260	0.25	+0.4
3,578,678	+		LRK54_RS16260	0.36	+3.2
3,578,687	+		LRK54_RS16260	0.39	-1.4
3,578,687	+		LRK54_RS16260	0.39	+0.5
3,578,687	+		LRK54_RS16260	0.39	-1.8
3,578,687	+		LRK54_RS16260	0.39	-0.9
3,578,687	+		LRK54_RS16260	0.39	+0.9
3,578,687	+		LRK54_RS16260	0.39	-2.1
3,578,687	+		LRK54_RS16260	0.39	+0.7
3,578,687	+		LRK54_RS16260	0.39	+0.7
3,578,687	+		LRK54_RS16260	0.39	-0.4
3,578,687	+		LRK54_RS16260	0.39	+0.7
3,578,687	+		LRK54_RS16260	0.39	-0.9
3,578,687	+		LRK54_RS16260	0.39	+1.1
3,578,687	+		LRK54_RS16260	0.39	-0.2
3,578,687	+		LRK54_RS16260	0.39	-1.6
3,578,687	+		LRK54_RS16260	0.39	-0.4
3,578,687	+		LRK54_RS16260	0.39	-1.2
3,578,687	+		LRK54_RS16260	0.39	-0.1
3,578,687	+		LRK54_RS16260	0.39	-1.1
3,578,687	+		LRK54_RS16260	0.39	+1.3
3,578,687	+		LRK54_RS16260	0.39	-0.3
3,578,687	+		LRK54_RS16260	0.39	+1.9
3,578,688	-		LRK54_RS16260	0.39	-1.6
3,578,688	-		LRK54_RS16260	0.39	-1.5
3,578,688	-		LRK54_RS16260	0.39	-0.2
3,578,688	-		LRK54_RS16260	0.39	+0.4
3,578,688	-		LRK54_RS16260	0.39	+1.1
3,578,688	-		LRK54_RS16260	0.39	-2.6
3,578,688	-		LRK54_RS16260	0.39	+1.9
3,578,688	-		LRK54_RS16260	0.39	+0.0
3,578,688	-		LRK54_RS16260	0.39	-1.0
3,578,688	-		LRK54_RS16260	0.39	+1.2
3,578,688	-		LRK54_RS16260	0.39	+1.1
3,578,688	-		LRK54_RS16260	0.39	-1.4
3,578,688	-		LRK54_RS16260	0.39	-0.4
3,578,688	-		LRK54_RS16260	0.39	+1.1
3,578,688	-		LRK54_RS16260	0.39	-0.4
3,578,688	-		LRK54_RS16260	0.39	-1.0
3,578,688	-		LRK54_RS16260	0.39	+0.7
3,578,688	-		LRK54_RS16260	0.39	+2.9
3,578,688	-		LRK54_RS16260	0.39	+1.1
3,578,688	-		LRK54_RS16260	0.39	-0.2
3,578,688	-		LRK54_RS16260	0.39	+0.7
3,578,688	-		LRK54_RS16260	0.39	+0.7
3,578,688	-		LRK54_RS16260	0.39	+0.3
3,579,084	+				-0.8
3,579,084	+				-1.0
3,579,084	+				+3.9
3,579,084	+				+0.2
3,579,084	+				-1.7
3,579,084	+				+1.8
3,579,085	-				-0.6
3,579,085	-				-0.3
3,579,085	-				+0.8
3,579,085	-				-0.2
3,579,085	-				-0.6
3,579,085	-				+0.5
3,579,145	+				-0.1
3,579,145	+				-0.3
3,579,145	+				-0.9
3,579,145	+				-1.8
3,579,145	+				+0.4
3,579,145	+				-1.0
3,579,145	+				-0.5
3,579,145	+				+0.1
3,579,145	+				+0.9
3,579,145	+				-1.4
3,579,145	+				-1.7
3,579,145	+				+2.3
3,579,145	+				-0.5
3,579,145	+				+1.5
3,579,145	+				-0.3
3,579,145	+				-1.7
3,579,145	+				-0.0
3,579,145	+				-1.0
3,579,145	+				-1.3
3,579,145	+				-2.2
3,579,145	+				+0.4
3,579,145	+				-1.0
3,579,146	-				-0.1
3,579,146	-				+0.3
3,579,146	-				+0.9
3,579,146	-				-0.5
3,579,146	-				-0.2
3,579,146	-				+0.5
3,579,146	-				-1.0
3,579,146	-				-1.0
3,579,146	-				+0.4
3,579,146	-				-0.2
3,579,146	-				-1.1
3,579,146	-				-1.1
3,579,146	-				+0.5
3,579,146	-				+2.4
3,579,146	-				-0.5
3,579,146	-				+1.2
3,579,146	-				+1.2
3,579,146	-				-0.4
3,579,146	-				+0.2
3,579,146	-				+0.5
3,579,208	+		LRK54_RS16265	0.13	-1.0
3,579,209	-		LRK54_RS16265	0.13	+1.1
3,579,209	-		LRK54_RS16265	0.13	-0.8
3,579,211	-		LRK54_RS16265	0.13	-0.2