Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15925

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,506,824	+		LRK54_RS15920	0.72	+2.8
3,506,825	-		LRK54_RS15920	0.73	-0.9
3,506,825	-		LRK54_RS15920	0.73	+0.4
3,506,925	+		LRK54_RS15920	0.77	-1.4
3,506,927	+		LRK54_RS15920	0.78	-0.6
3,507,035	+		LRK54_RS15920	0.83	-0.4
3,507,036	-		LRK54_RS15920	0.83	-0.4
3,507,036	-		LRK54_RS15920	0.83	+0.1
3,507,049	+		LRK54_RS15920	0.84	+0.1
3,507,049	+		LRK54_RS15920	0.84	-1.2
3,507,049	+		LRK54_RS15920	0.84	-0.7
3,507,049	+		LRK54_RS15920	0.84	-1.5
3,507,049	+		LRK54_RS15920	0.84	+0.8
3,507,049	+		LRK54_RS15920	0.84	-1.2
3,507,049	+		LRK54_RS15920	0.84	-0.4
3,507,049	+		LRK54_RS15920	0.84	+0.2
3,507,049	+		LRK54_RS15920	0.84	-1.9
3,507,049	+		LRK54_RS15920	0.84	+0.0
3,507,049	+		LRK54_RS15920	0.84	+0.3
3,507,049	+		LRK54_RS15920	0.84	-0.2
3,507,049	+		LRK54_RS15920	0.84	-1.3
3,507,049	+		LRK54_RS15920	0.84	+0.3
3,507,049	+		LRK54_RS15920	0.84	-0.9
3,507,049	+		LRK54_RS15920	0.84	-0.7
3,507,049	+		LRK54_RS15920	0.84	-0.3
3,507,049	+		LRK54_RS15920	0.84	-0.7
3,507,050	-		LRK54_RS15920	0.84	-0.2
3,507,050	-		LRK54_RS15920	0.84	+2.8
3,507,050	-		LRK54_RS15920	0.84	-0.8
3,507,050	-		LRK54_RS15920	0.84	+0.2
3,507,050	-		LRK54_RS15920	0.84	-0.9
3,507,050	-		LRK54_RS15920	0.84	+1.4
3,507,050	-		LRK54_RS15920	0.84	-2.0
3,507,050	-		LRK54_RS15920	0.84	-0.1
3,507,050	-		LRK54_RS15920	0.84	+1.2
3,507,050	-		LRK54_RS15920	0.84	-0.1
3,507,050	-		LRK54_RS15920	0.84	+3.6
3,507,050	-		LRK54_RS15920	0.84	+0.9
3,507,050	-		LRK54_RS15920	0.84	-1.4
3,507,103	+		LRK54_RS15920	0.86	-1.0
3,507,103	+		LRK54_RS15920	0.86	+0.0
3,507,103	+		LRK54_RS15920	0.86	+0.0
3,507,104	-		LRK54_RS15920	0.86	+0.4
3,507,104	-		LRK54_RS15920	0.86	+1.0
3,507,104	-		LRK54_RS15920	0.86	+1.2
3,507,104	-		LRK54_RS15920	0.86	-2.0
3,507,155	+		LRK54_RS15920	0.89	-0.9
3,507,155	+		LRK54_RS15920	0.89	+0.9
3,507,155	+		LRK54_RS15920	0.89	+0.7
3,507,155	+		LRK54_RS15920	0.89	-0.2
3,507,155	+		LRK54_RS15920	0.89	-1.6
3,507,155	+		LRK54_RS15920	0.89	-0.9
3,507,155	+		LRK54_RS15920	0.89	-0.4
3,507,155	+		LRK54_RS15920	0.89	-0.6
3,507,155	+		LRK54_RS15920	0.89	+0.8
3,507,155	+		LRK54_RS15920	0.89	-1.4
3,507,155	+		LRK54_RS15920	0.89	-0.1
3,507,155	+		LRK54_RS15920	0.89	-3.5
3,507,155	+		LRK54_RS15920	0.89	+0.8
3,507,155	+		LRK54_RS15920	0.89	-1.5
3,507,155	+		LRK54_RS15920	0.89	+0.4
3,507,155	+		LRK54_RS15920	0.89	-0.2
3,507,155	+		LRK54_RS15920	0.89	-0.5
3,507,156	-		LRK54_RS15920	0.89	-1.0
3,507,156	-		LRK54_RS15920	0.89	+0.1
3,507,156	-		LRK54_RS15920	0.89	+2.1
3,507,156	-		LRK54_RS15920	0.89	-0.9
3,507,156	-		LRK54_RS15920	0.89	-0.5
3,507,156	-		LRK54_RS15920	0.89	+0.7
3,507,156	-		LRK54_RS15920	0.89	-0.7
3,507,156	-		LRK54_RS15920	0.89	+0.0
3,507,156	-		LRK54_RS15920	0.89	+0.5
3,507,156	-		LRK54_RS15920	0.89	+1.3
3,507,156	-		LRK54_RS15920	0.89	+1.5
3,507,331	+				+3.8
3,507,331	+				-0.1
3,507,331	+				-0.6
3,507,332	-				-0.1
3,507,332	-				+0.8
3,507,332	-				+0.3
3,507,454	+				+1.2
3,507,454	+				-1.4
3,507,454	+				-0.9
3,507,454	+				+0.2
3,507,454	+				-0.2
3,507,454	+				-1.4
3,507,454	+				-0.9
3,507,454	+				-0.6
3,507,454	+				-1.9
3,507,454	+				-0.2
3,507,455	-				-1.0
3,507,455	-				-0.3
3,507,455	-				+1.2
3,507,455	-				-1.6
3,507,455	-				-0.4
3,507,455	-				+0.4
3,507,455	-				-0.1
3,507,455	-				-2.1
3,507,455	-				+1.1
3,507,455	-				-0.5
3,507,455	-				-1.2
3,507,455	-				-0.9
3,507,545	+				-0.3
3,507,545	+				-1.4
3,507,545	+				+1.0
3,507,546	-				+0.4
3,507,546	-				+0.7
3,507,546	-				+0.8
3,507,546	-				-1.7
3,507,546	-				-1.1
3,507,611	+		LRK54_RS15925	0.25	-0.7
3,507,611	+		LRK54_RS15925	0.25	-2.5
3,507,611	+		LRK54_RS15925	0.25	-0.7
3,507,611	+		LRK54_RS15925	0.25	-1.4
3,507,866	+				-0.9
3,507,866	+				-0.7
3,507,866	+				+0.3
3,507,867	-				-1.2
3,507,867	-				+0.1
3,507,867	-				-1.0
3,507,867	-				-1.1
3,507,867	-				+0.5
3,507,900	+				-1.4
3,507,900	+				-1.4
3,507,900	+				-0.7
3,507,900	+				-0.3
3,507,900	+				-1.6
3,507,900	+				+2.8
3,507,900	+				-1.5
3,507,900	+				-2.0
3,507,900	+				-0.1
3,507,900	+				+0.3
3,507,900	+				-2.5
3,507,900	+				-0.7
3,507,900	+				-2.3
3,507,900	+				-1.7
3,507,900	+				-0.2
3,507,900	+				-1.3
3,507,900	+				-0.2
3,507,900	+				-1.5
3,507,900	+				-0.5
3,507,900	+				+0.5
3,507,900	+				-1.4
3,507,900	+				-1.4
3,507,900	+				-0.4
3,507,900	+				-1.2
3,507,900	+				+0.1
3,507,900	+				-0.0
3,507,900	+				+0.2
3,507,900	+				+1.0
3,507,900	+				-1.5
3,507,900	+				+0.1
3,507,900	+				+0.5
3,507,901	-				-1.3
3,507,901	-				+1.4
3,507,901	-				-0.3
3,507,901	-				+0.7
3,507,901	-				-2.5
3,507,901	-				+1.5
3,507,901	-				-1.7
3,507,901	-				-0.2
3,507,901	-				-0.8
3,507,901	-				+0.8
3,507,901	-				+0.5
3,507,901	-				+0.1
3,507,901	-				+0.7
3,507,901	-				-0.1
3,507,901	-				-0.9
3,507,901	-				-1.5
3,507,901	-				+1.3
3,507,901	-				-0.1
3,507,901	-				-0.3
3,507,901	-				-2.1
3,507,901	-				-0.4
3,507,901	-				-0.7
3,508,471	+		LRK54_RS15930	0.50	-1.7
3,508,471	+		LRK54_RS15930	0.50	-2.8
3,508,471	+		LRK54_RS15930	0.50	+0.0
3,508,471	+		LRK54_RS15930	0.50	+0.2
3,508,472	-		LRK54_RS15930	0.50	+0.8
3,508,472	-		LRK54_RS15930	0.50	-0.7
3,508,472	-		LRK54_RS15930	0.50	+1.5
3,508,472	-		LRK54_RS15930	0.50	+1.9
3,508,472	-		LRK54_RS15930	0.50	-0.0
3,508,472	-		LRK54_RS15930	0.50	+1.0
3,508,591	+		LRK54_RS15930	0.61	-1.8
3,508,591	+		LRK54_RS15930	0.61	+0.2
3,508,591	+		LRK54_RS15930	0.61	-2.3
3,508,591	+		LRK54_RS15930	0.61	-1.1
3,508,645	+		LRK54_RS15930	0.66	+2.9
3,508,645	+		LRK54_RS15930	0.66	-0.6
3,508,645	+		LRK54_RS15930	0.66	+0.0
3,508,645	+		LRK54_RS15930	0.66	-1.0
3,508,645	+		LRK54_RS15930	0.66	+0.2
3,508,645	+		LRK54_RS15930	0.66	+0.7
3,508,645	+		LRK54_RS15930	0.66	-0.4
3,508,646	-		LRK54_RS15930	0.66	-1.4
3,508,646	-		LRK54_RS15930	0.66	+1.0
3,508,646	-		LRK54_RS15930	0.66	-2.6
3,508,646	-		LRK54_RS15930	0.66	+0.3
3,508,646	-		LRK54_RS15930	0.66	+0.6
3,508,741	+		LRK54_RS15930	0.75	+2.4
3,508,741	+		LRK54_RS15930	0.75	+2.9
3,508,741	+		LRK54_RS15930	0.75	+0.0
3,508,741	+		LRK54_RS15930	0.75	-3.1
3,508,741	+		LRK54_RS15930	0.75	-2.6
3,508,741	+		LRK54_RS15930	0.75	+2.4
3,508,741	+		LRK54_RS15930	0.75	-0.2
3,508,741	+		LRK54_RS15930	0.75	-0.5
3,508,741	+		LRK54_RS15930	0.75	-1.3
3,508,741	+		LRK54_RS15930	0.75	+1.2
3,508,741	+		LRK54_RS15930	0.75	-0.6
3,508,741	+		LRK54_RS15930	0.75	-0.9
3,508,742	-		LRK54_RS15930	0.75	+1.3
3,508,742	-		LRK54_RS15930	0.75	-0.8
3,508,742	-		LRK54_RS15930	0.75	-1.8
3,508,742	-		LRK54_RS15930	0.75	+1.0
3,508,742	-		LRK54_RS15930	0.75	-1.9
3,508,742	-		LRK54_RS15930	0.75	-0.6
3,508,742	-		LRK54_RS15930	0.75	-0.7
3,508,742	-		LRK54_RS15930	0.75	-0.1
3,508,742	-		LRK54_RS15930	0.75	-0.6
3,508,742	-		LRK54_RS15930	0.75	-0.4
3,508,742	-		LRK54_RS15930	0.75	+2.9
3,508,742	-		LRK54_RS15930	0.75	-2.3
3,508,742	-		LRK54_RS15930	0.75	-0.4
3,508,742	-		LRK54_RS15930	0.75	+0.6
3,508,742	-		LRK54_RS15930	0.75	-0.4
3,508,742	-		LRK54_RS15930	0.75	+2.6
3,508,742	-		LRK54_RS15930	0.75	+0.6
3,508,742	-		LRK54_RS15930	0.75	-1.5
3,508,742	-		LRK54_RS15930	0.75	-0.5
3,508,742	-		LRK54_RS15930	0.75	-1.9
3,508,771	+		LRK54_RS15930	0.78	-0.2
3,508,771	+		LRK54_RS15930	0.78	+0.6
3,508,772	-		LRK54_RS15930	0.78	+0.2
3,508,772	-		LRK54_RS15930	0.78	-0.7
3,508,772	-		LRK54_RS15930	0.78	-0.6