Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15605

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,442,692	+				-2.5
3,443,056	-		LRK54_RS15600	0.10	+0.1
3,443,070	+		LRK54_RS15600	0.13	-1.2
3,443,070	+		LRK54_RS15600	0.13	-1.2
3,443,070	+		LRK54_RS15600	0.13	+0.9
3,443,070	+		LRK54_RS15600	0.13	-1.9
3,443,071	-		LRK54_RS15600	0.13	+0.7
3,443,071	-		LRK54_RS15600	0.13	+0.0
3,443,071	-		LRK54_RS15600	0.13	+0.6
3,443,071	-		LRK54_RS15600	0.13	+1.0
3,443,073	-		LRK54_RS15600	0.13	-0.3
3,443,073	-		LRK54_RS15600	0.13	+1.4
3,443,088	+		LRK54_RS15600	0.16	+0.2
3,443,102	+		LRK54_RS15600	0.18	+0.3
3,443,102	+		LRK54_RS15600	0.18	+1.2
3,443,103	-		LRK54_RS15600	0.18	-1.7
3,443,103	-		LRK54_RS15600	0.18	+1.5
3,443,104	+		LRK54_RS15600	0.18	+0.5
3,443,104	+		LRK54_RS15600	0.18	-1.6
3,443,105	-		LRK54_RS15600	0.18	+0.7
3,443,105	-		LRK54_RS15600	0.18	+0.8
3,443,105	-		LRK54_RS15600	0.18	-0.6
3,443,105	-		LRK54_RS15600	0.18	-1.0
3,443,105	-		LRK54_RS15600	0.18	-1.2
3,443,121	+		LRK54_RS15600	0.21	+0.0
3,443,130	-		LRK54_RS15600	0.22	+3.4
3,443,130	-		LRK54_RS15600	0.22	+0.9
3,443,133	+		LRK54_RS15600	0.23	-0.6
3,443,134	-		LRK54_RS15600	0.23	-0.4
3,443,134	-		LRK54_RS15600	0.23	+1.3
3,443,137	-		LRK54_RS15600	0.23	+0.2
3,443,137	-		LRK54_RS15600	0.23	+1.7
3,443,212	-		LRK54_RS15600	0.35	+1.3
3,443,212	-		LRK54_RS15600	0.35	-0.0
3,443,212	-		LRK54_RS15600	0.35	-0.5
3,443,250	+		LRK54_RS15600	0.42	+0.9
3,443,250	+		LRK54_RS15600	0.42	-1.1
3,443,251	-		LRK54_RS15600	0.42	-1.7
3,443,259	+		LRK54_RS15600	0.43	-1.4
3,443,260	-		LRK54_RS15600	0.43	-0.7
3,443,260	-		LRK54_RS15600	0.43	-1.8
3,443,283	+		LRK54_RS15600	0.47	-0.8
3,443,314	+		LRK54_RS15600	0.52	+2.9
3,443,385	+		LRK54_RS15600	0.63	-2.4
3,443,385	+		LRK54_RS15600	0.63	-0.7
3,443,603	+				-2.2
3,443,603	+				-1.7
3,443,603	+				-0.7
3,443,604	-				-0.4
3,443,739	+		LRK54_RS15605	0.17	-1.1
3,443,739	+		LRK54_RS15605	0.17	-1.3
3,443,739	+		LRK54_RS15605	0.17	-0.5
3,443,740	-		LRK54_RS15605	0.18	-0.7
3,443,792	-		LRK54_RS15605	0.35	+0.7
3,443,792	-		LRK54_RS15605	0.35	+1.9
3,443,792	-		LRK54_RS15605	0.35	+1.3
3,443,792	-		LRK54_RS15605	0.35	-0.4
3,443,885	+		LRK54_RS15605	0.67	-1.0
3,443,885	+		LRK54_RS15605	0.67	+0.3
3,443,885	+		LRK54_RS15605	0.67	-1.8
3,443,885	+		LRK54_RS15605	0.67	-1.4
3,443,885	+		LRK54_RS15605	0.67	-0.8
3,443,885	+		LRK54_RS15605	0.67	+0.8
3,443,965	+				-0.3
3,443,966	-				-0.2
3,443,966	-				-0.9
3,443,977	+				+0.1
3,443,995	+				-0.7
3,443,995	+				-1.5
3,443,995	+				-0.1
3,443,995	+				-0.5
3,443,995	+				-0.0
3,443,995	+				-0.9
3,443,995	+				+1.9
3,443,995	+				+1.1
3,443,995	+				+1.3
3,443,996	-				+2.1
3,443,996	-				-0.7
3,443,996	-				-1.1
3,444,001	+				+1.9
3,444,103	+				+1.5
3,444,103	+				+1.3
3,444,103	+				-0.2
3,444,103	+				+0.5
3,444,103	+				-0.1
3,444,103	+				-0.5
3,444,103	+				-0.7
3,444,104	-				+1.2
3,444,104	-				-0.4
3,444,104	-				-0.4
3,444,104	-				-0.1
3,444,291	+		LRK54_RS15610	0.11	-1.0
3,444,291	+		LRK54_RS15610	0.11	-0.8
3,444,291	+		LRK54_RS15610	0.11	-0.5
3,444,292	-		LRK54_RS15610	0.11	-1.8
3,444,292	-		LRK54_RS15610	0.11	-1.4
3,444,292	-		LRK54_RS15610	0.11	+0.2
3,444,292	-		LRK54_RS15610	0.11	-0.6
3,444,363	+		LRK54_RS15610	0.16	+1.7
3,444,363	+		LRK54_RS15610	0.16	-0.2
3,444,363	+		LRK54_RS15610	0.16	-2.4
3,444,363	+		LRK54_RS15610	0.16	+0.0
3,444,363	+		LRK54_RS15610	0.16	+0.9
3,444,363	+		LRK54_RS15610	0.16	-0.1
3,444,363	+		LRK54_RS15610	0.16	+0.2
3,444,363	+		LRK54_RS15610	0.16	+2.5
3,444,363	+		LRK54_RS15610	0.16	+1.0
3,444,364	-		LRK54_RS15610	0.16	-1.1
3,444,364	-		LRK54_RS15610	0.16	-1.0
3,444,364	-		LRK54_RS15610	0.16	-0.7
3,444,364	-		LRK54_RS15610	0.16	+1.9
3,444,364	-		LRK54_RS15610	0.16	-0.1
3,444,364	-		LRK54_RS15610	0.16	-2.3
3,444,364	-		LRK54_RS15610	0.16	+0.3
3,444,364	-		LRK54_RS15610	0.16	-1.1
3,444,432	+		LRK54_RS15610	0.21	-1.1
3,444,432	+		LRK54_RS15610	0.21	-1.8
3,444,432	+		LRK54_RS15610	0.21	+1.3
3,444,432	+		LRK54_RS15610	0.21	-0.8
3,444,432	+		LRK54_RS15610	0.21	-0.3
3,444,432	+		LRK54_RS15610	0.21	-0.2
3,444,432	+		LRK54_RS15610	0.21	+1.0
3,444,433	-		LRK54_RS15610	0.21	-2.1
3,444,433	-		LRK54_RS15610	0.21	+0.4
3,444,433	-		LRK54_RS15610	0.21	+1.6
3,444,433	-		LRK54_RS15610	0.21	+0.1
3,444,486	+		LRK54_RS15610	0.25	+1.0
3,444,486	+		LRK54_RS15610	0.25	-2.8
3,444,486	+		LRK54_RS15610	0.25	+0.3
3,444,487	-		LRK54_RS15610	0.25	-1.4
3,444,541	+		LRK54_RS15610	0.29	+0.4
3,444,541	+		LRK54_RS15610	0.29	-0.9
3,444,541	+		LRK54_RS15610	0.29	-1.7
3,444,541	+		LRK54_RS15610	0.29	-2.8
3,444,541	+		LRK54_RS15610	0.29	-1.8
3,444,541	+		LRK54_RS15610	0.29	+0.7
3,444,541	+		LRK54_RS15610	0.29	-1.4
3,444,542	-		LRK54_RS15610	0.29	-1.9
3,444,542	-		LRK54_RS15610	0.29	+0.3
3,444,542	-		LRK54_RS15610	0.29	-0.5
3,444,542	-		LRK54_RS15610	0.29	-0.8
3,444,542	-		LRK54_RS15610	0.29	-1.4
3,444,542	-		LRK54_RS15610	0.29	-0.3
3,444,542	-		LRK54_RS15610	0.29	+0.4
3,444,542	-		LRK54_RS15610	0.29	-1.5
3,444,542	-		LRK54_RS15610	0.29	-0.2
3,444,542	-		LRK54_RS15610	0.29	+0.3
3,444,891	+		LRK54_RS15610	0.54	-1.8
3,444,891	+		LRK54_RS15610	0.54	-0.5
3,444,891	+		LRK54_RS15610	0.54	-1.2
3,444,891	+		LRK54_RS15610	0.54	+0.5
3,444,891	+		LRK54_RS15610	0.54	-0.5
3,444,891	+		LRK54_RS15610	0.54	-0.3
3,444,891	+		LRK54_RS15610	0.54	+0.7
3,444,891	+		LRK54_RS15610	0.54	-2.8
3,444,891	+		LRK54_RS15610	0.54	-0.8
3,444,891	+		LRK54_RS15610	0.54	+1.3
3,444,891	+		LRK54_RS15610	0.54	-0.5
3,444,891	+		LRK54_RS15610	0.54	-0.2
3,444,891	+		LRK54_RS15610	0.54	-1.2
3,444,891	+		LRK54_RS15610	0.54	-3.4
3,444,892	-		LRK54_RS15610	0.54	+0.6
3,444,892	-		LRK54_RS15610	0.54	-0.7
3,444,892	-		LRK54_RS15610	0.54	-0.8
3,444,892	-		LRK54_RS15610	0.54	-1.0
3,444,892	-		LRK54_RS15610	0.54	-0.8
3,444,892	-		LRK54_RS15610	0.54	-2.0
3,444,892	-		LRK54_RS15610	0.54	+0.9
3,444,892	-		LRK54_RS15610	0.54	+1.5
3,444,892	-		LRK54_RS15610	0.54	-2.6
3,444,892	-		LRK54_RS15610	0.54	+0.4
3,444,892	-		LRK54_RS15610	0.54	+0.4