Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS14970 and LRK54_RS14975 are separated by 723 nucleotides LRK54_RS14975 and LRK54_RS14980 are separated by 137 nucleotides
LRK54_RS14970: LRK54_RS14970 - hypothetical protein, at 3,309,939 to 3,310,421
_RS14970
LRK54_RS14975: LRK54_RS14975 - CinA family protein, at 3,311,145 to 3,311,654
_RS14975
LRK54_RS14980: LRK54_RS14980 - recombinase RecA, at 3,311,792 to 3,312,829
_RS14980
Position (kb) 3311
3312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.323 kb on + strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.324 kb on - strand, within LRK54_RS14970 at 3310.398 kb on + strand at 3310.398 kb on + strand at 3310.398 kb on + strand at 3310.398 kb on + strand at 3310.398 kb on + strand at 3310.398 kb on + strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.399 kb on - strand at 3310.408 kb on + strand at 3310.408 kb on + strand at 3310.408 kb on + strand at 3310.408 kb on + strand at 3310.409 kb on - strand at 3310.409 kb on - strand at 3310.409 kb on - strand at 3310.409 kb on - strand at 3310.409 kb on - strand at 3310.409 kb on - strand at 3310.409 kb on - strand at 3310.409 kb on - strand at 3310.480 kb on + strand at 3310.570 kb on + strand at 3310.571 kb on - strand at 3310.729 kb on + strand at 3310.729 kb on + strand at 3310.729 kb on + strand at 3310.729 kb on + strand at 3310.730 kb on - strand at 3310.839 kb on - strand at 3310.839 kb on - strand at 3310.846 kb on + strand at 3310.894 kb on + strand at 3310.894 kb on + strand at 3310.894 kb on + strand at 3310.894 kb on + strand at 3310.894 kb on + strand at 3310.894 kb on + strand at 3310.894 kb on + strand at 3310.894 kb on + strand at 3310.895 kb on - strand at 3310.895 kb on - strand at 3310.895 kb on - strand at 3311.000 kb on + strand at 3311.000 kb on + strand at 3311.090 kb on + strand at 3311.091 kb on - strand at 3311.091 kb on - strand at 3311.165 kb on + strand at 3311.165 kb on + strand at 3311.166 kb on - strand at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.328 kb on + strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.329 kb on - strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.334 kb on + strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.335 kb on - strand, within LRK54_RS14975 at 3311.372 kb on + strand, within LRK54_RS14975 at 3311.373 kb on - strand, within LRK54_RS14975 at 3311.422 kb on + strand, within LRK54_RS14975 at 3311.422 kb on + strand, within LRK54_RS14975 at 3311.423 kb on - strand, within LRK54_RS14975 at 3311.423 kb on - strand, within LRK54_RS14975 at 3311.423 kb on - strand, within LRK54_RS14975 at 3311.694 kb on + strand at 3311.695 kb on - strand at 3311.695 kb on - strand at 3311.981 kb on + strand, within LRK54_RS14980 at 3311.981 kb on + strand, within LRK54_RS14980 at 3311.981 kb on + strand, within LRK54_RS14980 at 3311.981 kb on + strand, within LRK54_RS14980 at 3311.981 kb on + strand, within LRK54_RS14980 at 3311.981 kb on + strand, within LRK54_RS14980 at 3311.981 kb on + strand, within LRK54_RS14980 at 3311.981 kb on + strand, within LRK54_RS14980 at 3311.982 kb on - strand, within LRK54_RS14980 at 3311.982 kb on - strand, within LRK54_RS14980 at 3311.982 kb on - strand, within LRK54_RS14980 at 3311.982 kb on - strand, within LRK54_RS14980 at 3311.982 kb on - strand, within LRK54_RS14980 at 3311.982 kb on - strand, within LRK54_RS14980 at 3311.982 kb on - strand, within LRK54_RS14980 at 3312.095 kb on + strand, within LRK54_RS14980 at 3312.095 kb on + strand, within LRK54_RS14980 at 3312.095 kb on + strand, within LRK54_RS14980 at 3312.095 kb on + strand, within LRK54_RS14980 at 3312.095 kb on + strand, within LRK54_RS14980 at 3312.095 kb on + strand, within LRK54_RS14980 at 3312.096 kb on - strand, within LRK54_RS14980 at 3312.096 kb on - strand, within LRK54_RS14980 at 3312.096 kb on - strand, within LRK54_RS14980 at 3312.096 kb on - strand, within LRK54_RS14980 at 3312.096 kb on - strand, within LRK54_RS14980 at 3312.096 kb on - strand, within LRK54_RS14980 at 3312.440 kb on + strand, within LRK54_RS14980 at 3312.440 kb on + strand, within LRK54_RS14980 at 3312.440 kb on + strand, within LRK54_RS14980 at 3312.440 kb on + strand, within LRK54_RS14980 at 3312.441 kb on - strand, within LRK54_RS14980 at 3312.441 kb on - strand, within LRK54_RS14980 at 3312.441 kb on - strand, within LRK54_RS14980 at 3312.441 kb on - strand, within LRK54_RS14980 at 3312.441 kb on - strand, within LRK54_RS14980 at 3312.578 kb on + strand, within LRK54_RS14980 at 3312.578 kb on + strand, within LRK54_RS14980 at 3312.578 kb on + strand, within LRK54_RS14980
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 3,310,323 + LRK54_RS14970 0.80 +0.3 3,310,323 + LRK54_RS14970 0.80 -3.1 3,310,323 + LRK54_RS14970 0.80 -1.5 3,310,323 + LRK54_RS14970 0.80 -1.6 3,310,323 + LRK54_RS14970 0.80 -1.8 3,310,323 + LRK54_RS14970 0.80 -0.4 3,310,323 + LRK54_RS14970 0.80 +0.5 3,310,323 + LRK54_RS14970 0.80 -0.4 3,310,323 + LRK54_RS14970 0.80 -2.2 3,310,323 + LRK54_RS14970 0.80 +1.2 3,310,324 - LRK54_RS14970 0.80 +0.3 3,310,324 - LRK54_RS14970 0.80 +0.7 3,310,324 - LRK54_RS14970 0.80 -2.1 3,310,324 - LRK54_RS14970 0.80 +0.2 3,310,324 - LRK54_RS14970 0.80 +0.4 3,310,324 - LRK54_RS14970 0.80 -2.4 3,310,324 - LRK54_RS14970 0.80 +1.2 3,310,324 - LRK54_RS14970 0.80 +0.2 3,310,324 - LRK54_RS14970 0.80 -1.0 3,310,324 - LRK54_RS14970 0.80 +2.4 3,310,324 - LRK54_RS14970 0.80 +1.8 3,310,324 - LRK54_RS14970 0.80 +0.0 3,310,398 + -0.7 3,310,398 + +0.1 3,310,398 + -0.7 3,310,398 + +1.8 3,310,398 + -0.5 3,310,398 + +0.0 3,310,399 - +4.4 3,310,399 - -1.5 3,310,399 - -1.0 3,310,399 - +0.2 3,310,399 - +0.2 3,310,399 - +0.7 3,310,399 - +1.7 3,310,399 - +0.5 3,310,399 - +2.8 3,310,399 - +0.8 3,310,399 - +0.0 3,310,399 - -0.9 3,310,408 + +1.9 3,310,408 + +0.5 3,310,408 + -0.4 3,310,408 + -0.6 3,310,409 - -0.7 3,310,409 - -0.7 3,310,409 - +0.2 3,310,409 - +1.5 3,310,409 - -0.7 3,310,409 - +0.6 3,310,409 - -1.0 3,310,409 - -0.5 3,310,480 + +0.3 3,310,570 + +1.2 3,310,571 - -1.3 3,310,729 + -0.7 3,310,729 + +0.8 3,310,729 + -0.6 3,310,729 + +0.6 3,310,730 - -0.2 3,310,839 - +2.8 3,310,839 - -0.9 3,310,846 + -0.2 3,310,894 + +0.9 3,310,894 + +0.3 3,310,894 + -0.9 3,310,894 + +0.3 3,310,894 + +0.1 3,310,894 + +0.4 3,310,894 + +3.2 3,310,894 + -2.1 3,310,895 - -1.2 3,310,895 - -1.1 3,310,895 - -0.5 3,311,000 + +0.6 3,311,000 + +1.1 3,311,090 + -0.9 3,311,091 - -1.3 3,311,091 - -1.7 3,311,165 + +0.7 3,311,165 + +0.5 3,311,166 - -0.2 3,311,328 + LRK54_RS14975 0.36 -0.0 3,311,328 + LRK54_RS14975 0.36 -0.1 3,311,328 + LRK54_RS14975 0.36 +0.6 3,311,328 + LRK54_RS14975 0.36 -0.4 3,311,328 + LRK54_RS14975 0.36 -1.0 3,311,328 + LRK54_RS14975 0.36 -1.7 3,311,328 + LRK54_RS14975 0.36 +0.0 3,311,328 + LRK54_RS14975 0.36 -0.1 3,311,328 + LRK54_RS14975 0.36 -1.0 3,311,328 + LRK54_RS14975 0.36 -1.1 3,311,328 + LRK54_RS14975 0.36 -1.7 3,311,328 + LRK54_RS14975 0.36 -1.3 3,311,328 + LRK54_RS14975 0.36 -1.7 3,311,328 + LRK54_RS14975 0.36 -0.8 3,311,328 + LRK54_RS14975 0.36 +1.2 3,311,328 + LRK54_RS14975 0.36 -0.1 3,311,328 + LRK54_RS14975 0.36 -0.5 3,311,328 + LRK54_RS14975 0.36 -2.1 3,311,328 + LRK54_RS14975 0.36 -1.5 3,311,328 + LRK54_RS14975 0.36 -0.8 3,311,328 + LRK54_RS14975 0.36 +0.4 3,311,328 + LRK54_RS14975 0.36 -1.3 3,311,328 + LRK54_RS14975 0.36 -1.4 3,311,328 + LRK54_RS14975 0.36 -0.1 3,311,328 + LRK54_RS14975 0.36 +0.7 3,311,329 - LRK54_RS14975 0.36 +1.0 3,311,329 - LRK54_RS14975 0.36 +1.6 3,311,329 - LRK54_RS14975 0.36 +0.0 3,311,329 - LRK54_RS14975 0.36 -2.2 3,311,329 - LRK54_RS14975 0.36 +0.1 3,311,329 - LRK54_RS14975 0.36 -2.5 3,311,329 - LRK54_RS14975 0.36 +0.9 3,311,329 - LRK54_RS14975 0.36 +0.4 3,311,329 - LRK54_RS14975 0.36 -1.7 3,311,329 - LRK54_RS14975 0.36 +0.9 3,311,329 - LRK54_RS14975 0.36 -0.4 3,311,329 - LRK54_RS14975 0.36 +1.3 3,311,329 - LRK54_RS14975 0.36 +1.7 3,311,329 - LRK54_RS14975 0.36 -1.6 3,311,329 - LRK54_RS14975 0.36 -0.6 3,311,329 - LRK54_RS14975 0.36 +1.2 3,311,329 - LRK54_RS14975 0.36 -1.4 3,311,329 - LRK54_RS14975 0.36 +1.0 3,311,329 - LRK54_RS14975 0.36 -2.3 3,311,329 - LRK54_RS14975 0.36 +1.5 3,311,329 - LRK54_RS14975 0.36 +0.5 3,311,329 - LRK54_RS14975 0.36 +0.5 3,311,334 + LRK54_RS14975 0.37 +0.6 3,311,334 + LRK54_RS14975 0.37 +1.0 3,311,334 + LRK54_RS14975 0.37 +1.2 3,311,334 + LRK54_RS14975 0.37 -2.5 3,311,334 + LRK54_RS14975 0.37 -0.4 3,311,334 + LRK54_RS14975 0.37 -0.3 3,311,334 + LRK54_RS14975 0.37 +1.0 3,311,334 + LRK54_RS14975 0.37 +1.8 3,311,334 + LRK54_RS14975 0.37 -0.4 3,311,334 + LRK54_RS14975 0.37 +0.3 3,311,334 + LRK54_RS14975 0.37 -0.0 3,311,334 + LRK54_RS14975 0.37 +0.0 3,311,334 + LRK54_RS14975 0.37 +0.8 3,311,334 + LRK54_RS14975 0.37 -1.6 3,311,334 + LRK54_RS14975 0.37 -0.7 3,311,334 + LRK54_RS14975 0.37 -0.2 3,311,335 - LRK54_RS14975 0.37 -0.7 3,311,335 - LRK54_RS14975 0.37 -1.2 3,311,335 - LRK54_RS14975 0.37 -0.8 3,311,335 - LRK54_RS14975 0.37 +0.1 3,311,335 - LRK54_RS14975 0.37 +0.5 3,311,335 - LRK54_RS14975 0.37 +0.0 3,311,335 - LRK54_RS14975 0.37 -2.5 3,311,335 - LRK54_RS14975 0.37 -1.5 3,311,335 - LRK54_RS14975 0.37 +2.9 3,311,335 - LRK54_RS14975 0.37 -1.1 3,311,335 - LRK54_RS14975 0.37 +0.8 3,311,335 - LRK54_RS14975 0.37 -1.2 3,311,335 - LRK54_RS14975 0.37 +0.9 3,311,335 - LRK54_RS14975 0.37 -1.0 3,311,335 - LRK54_RS14975 0.37 -1.4 3,311,335 - LRK54_RS14975 0.37 +0.4 3,311,335 - LRK54_RS14975 0.37 +1.6 3,311,335 - LRK54_RS14975 0.37 -0.4 3,311,335 - LRK54_RS14975 0.37 +0.5 3,311,335 - LRK54_RS14975 0.37 +1.4 3,311,372 + LRK54_RS14975 0.45 -0.9 3,311,373 - LRK54_RS14975 0.45 -2.5 3,311,422 + LRK54_RS14975 0.54 -0.1 3,311,422 + LRK54_RS14975 0.54 -1.7 3,311,423 - LRK54_RS14975 0.55 +1.1 3,311,423 - LRK54_RS14975 0.55 -1.7 3,311,423 - LRK54_RS14975 0.55 -1.1 3,311,694 + +0.5 3,311,695 - -0.8 3,311,695 - -0.7 3,311,981 + LRK54_RS14980 0.18 +0.5 3,311,981 + LRK54_RS14980 0.18 +0.4 3,311,981 + LRK54_RS14980 0.18 +0.3 3,311,981 + LRK54_RS14980 0.18 +0.2 3,311,981 + LRK54_RS14980 0.18 +1.2 3,311,981 + LRK54_RS14980 0.18 -0.4 3,311,981 + LRK54_RS14980 0.18 -0.9 3,311,981 + LRK54_RS14980 0.18 -1.7 3,311,982 - LRK54_RS14980 0.18 +1.1 3,311,982 - LRK54_RS14980 0.18 -0.3 3,311,982 - LRK54_RS14980 0.18 -0.6 3,311,982 - LRK54_RS14980 0.18 +2.7 3,311,982 - LRK54_RS14980 0.18 +2.7 3,311,982 - LRK54_RS14980 0.18 +1.0 3,311,982 - LRK54_RS14980 0.18 +0.0 3,312,095 + LRK54_RS14980 0.29 +1.2 3,312,095 + LRK54_RS14980 0.29 +0.0 3,312,095 + LRK54_RS14980 0.29 -0.7 3,312,095 + LRK54_RS14980 0.29 +2.2 3,312,095 + LRK54_RS14980 0.29 -0.7 3,312,095 + LRK54_RS14980 0.29 +2.8 3,312,096 - LRK54_RS14980 0.29 +0.1 3,312,096 - LRK54_RS14980 0.29 +0.5 3,312,096 - LRK54_RS14980 0.29 +0.2 3,312,096 - LRK54_RS14980 0.29 +0.1 3,312,096 - LRK54_RS14980 0.29 -0.5 3,312,096 - LRK54_RS14980 0.29 +0.8 3,312,440 + LRK54_RS14980 0.62 +1.8 3,312,440 + LRK54_RS14980 0.62 +0.6 3,312,440 + LRK54_RS14980 0.62 +0.1 3,312,440 + LRK54_RS14980 0.62 +0.8 3,312,441 - LRK54_RS14980 0.63 +0.2 3,312,441 - LRK54_RS14980 0.63 +0.3 3,312,441 - LRK54_RS14980 0.63 -0.7 3,312,441 - LRK54_RS14980 0.63 -2.4 3,312,441 - LRK54_RS14980 0.63 +1.6 3,312,578 + LRK54_RS14980 0.76 +0.0 3,312,578 + LRK54_RS14980 0.76 +0.2 3,312,578 + LRK54_RS14980 0.76 +1.0
Or see this region's nucleotide sequence