Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11890

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
2,635,210	+		LRK54_RS11885	0.53	-0.7
2,635,210	+		LRK54_RS11885	0.53	+0.2
2,635,210	+		LRK54_RS11885	0.53	-2.3
2,635,210	+		LRK54_RS11885	0.53	-0.1
2,635,210	+		LRK54_RS11885	0.53	-1.1
2,635,210	+		LRK54_RS11885	0.53	-0.2
2,635,210	+		LRK54_RS11885	0.53	+0.9
2,635,211	-		LRK54_RS11885	0.53	+0.3
2,635,211	-		LRK54_RS11885	0.53	+0.8
2,635,211	-		LRK54_RS11885	0.53	+1.5
2,635,211	-		LRK54_RS11885	0.53	+0.7
2,635,262	-		LRK54_RS11885	0.56	+0.2
2,635,262	-		LRK54_RS11885	0.56	+0.6
2,635,262	-		LRK54_RS11885	0.56	-0.6
2,635,262	-		LRK54_RS11885	0.56	+1.3
2,635,262	-		LRK54_RS11885	0.56	-0.7
2,635,858	+				+0.3
2,635,858	+				+0.4
2,635,972	+				-0.3
2,635,972	+				-0.5
2,635,972	+				+0.8
2,635,972	+				-1.0
2,635,972	+				+2.3
2,635,973	-				+1.4
2,635,973	-				-1.1
2,635,973	-				-0.5
2,636,044	+				+0.5
2,636,044	+				-1.1
2,636,188	+		LRK54_RS11890	0.28	+0.0
2,636,188	+		LRK54_RS11890	0.28	-0.2
2,636,188	+		LRK54_RS11890	0.28	-0.2
2,636,189	-		LRK54_RS11890	0.28	-0.6
2,636,189	-		LRK54_RS11890	0.28	-1.1
2,636,577	+				-1.6
2,636,577	+				+1.5
2,636,577	+				-0.5
2,636,577	+				+0.5
2,636,577	+				-2.4
2,636,577	+				-3.0
2,636,577	+				-0.2
2,636,577	+				+0.8
2,636,577	+				-1.4
2,636,577	+				+0.4
2,636,577	+				-0.4
2,636,577	+				-2.5
2,636,577	+				+1.2
2,636,577	+				+1.6
2,636,577	+				+1.1
2,636,577	+				-0.2
2,636,577	+				+1.3
2,636,577	+				-1.9
2,636,577	+				+0.0
2,636,577	+				+0.1
2,636,577	+				-1.0
2,636,577	+				-0.9
2,636,577	+				-2.2
2,636,577	+				+0.7
2,636,577	+				-0.6
2,636,577	+				+0.5
2,636,577	+				-0.8
2,636,577	+				+0.9
2,636,577	+				-0.2
2,636,577	+				-1.6
2,636,577	+				+0.2
2,636,578	-				-3.4
2,636,578	-				-0.8
2,636,578	-				+2.3
2,636,578	-				+0.5
2,636,578	-				-0.1
2,636,578	-				+1.5
2,636,578	-				+1.2
2,636,578	-				+0.3
2,636,578	-				-0.6
2,636,578	-				+1.0
2,636,578	-				+1.7
2,636,578	-				-1.6
2,636,578	-				-0.2
2,636,578	-				+0.7
2,636,578	-				+0.5
2,636,578	-				-1.0
2,636,578	-				+0.4
2,636,578	-				-0.5
2,636,578	-				+0.3
2,636,578	-				+1.5
2,636,578	-				+0.6
2,636,578	-				-0.7
2,636,582	+				-0.8
2,636,582	+				-2.0
2,636,582	+				-0.2
2,636,582	+				-0.7
2,636,582	+				-1.8
2,636,582	+				-0.2
2,636,582	+				-3.0
2,636,582	+				-0.2
2,636,582	+				-2.7
2,636,582	+				+0.4
2,636,582	+				+0.3
2,636,582	+				-1.6
2,636,582	+				-1.4
2,636,582	+				+0.3
2,636,582	+				-0.3
2,636,582	+				-2.0
2,636,583	-				-0.0
2,636,583	-				-0.2
2,636,583	-				+1.5
2,636,583	-				-1.6
2,636,583	-				-1.9
2,636,583	-				+0.6
2,636,583	-				-1.5
2,636,583	-				+0.0
2,636,583	-				-0.0
2,636,583	-				-1.3
2,636,583	-				+0.5
2,636,583	-				-1.7
2,636,583	-				-1.2
2,636,583	-				+0.7
2,636,583	-				+1.5
2,636,655	+				+0.4
2,636,656	-				-1.0
2,636,757	+		LRK54_RS11895	0.29	+0.6
2,636,757	+		LRK54_RS11895	0.29	-1.4
2,636,757	+		LRK54_RS11895	0.29	+3.8
2,636,757	+		LRK54_RS11895	0.29	-0.8
2,636,757	+		LRK54_RS11895	0.29	+0.6
2,636,757	+		LRK54_RS11895	0.29	+0.4
2,636,757	+		LRK54_RS11895	0.29	+0.1
2,636,757	+		LRK54_RS11895	0.29	+1.4
2,636,757	+		LRK54_RS11895	0.29	-1.1
2,636,757	+		LRK54_RS11895	0.29	+0.0
2,636,757	+		LRK54_RS11895	0.29	+0.0
2,636,757	+		LRK54_RS11895	0.29	-1.7
2,636,757	+		LRK54_RS11895	0.29	-2.6
2,636,757	+		LRK54_RS11895	0.29	-0.5
2,636,757	+		LRK54_RS11895	0.29	+1.0
2,636,757	+		LRK54_RS11895	0.29	+0.9
2,636,757	+		LRK54_RS11895	0.29	-2.5
2,636,757	+		LRK54_RS11895	0.29	-1.0
2,636,757	+		LRK54_RS11895	0.29	-0.2
2,636,757	+		LRK54_RS11895	0.29	-1.4
2,636,757	+		LRK54_RS11895	0.29	-1.3
2,636,757	+		LRK54_RS11895	0.29	-0.1
2,636,757	+		LRK54_RS11895	0.29	+0.4
2,636,758	-		LRK54_RS11895	0.29	-0.9
2,636,758	-		LRK54_RS11895	0.29	+1.2
2,636,758	-		LRK54_RS11895	0.29	+1.0
2,636,758	-		LRK54_RS11895	0.29	-1.1
2,636,758	-		LRK54_RS11895	0.29	-1.2
2,636,758	-		LRK54_RS11895	0.29	-0.8
2,636,758	-		LRK54_RS11895	0.29	-1.5
2,636,758	-		LRK54_RS11895	0.29	-0.0
2,636,758	-		LRK54_RS11895	0.29	+1.6
2,636,758	-		LRK54_RS11895	0.29	-0.8
2,636,758	-		LRK54_RS11895	0.29	-2.8
2,636,758	-		LRK54_RS11895	0.29	-2.2
2,636,758	-		LRK54_RS11895	0.29	+1.0
2,636,758	-		LRK54_RS11895	0.29	-0.0
2,636,758	-		LRK54_RS11895	0.29	+0.3
2,636,758	-		LRK54_RS11895	0.29	-0.4
2,636,758	-		LRK54_RS11895	0.29	+0.5
2,636,758	-		LRK54_RS11895	0.29	-2.4
2,636,758	-		LRK54_RS11895	0.29	-0.8
2,636,758	-		LRK54_RS11895	0.29	-1.2
2,636,758	-		LRK54_RS11895	0.29	-2.4
2,636,758	-		LRK54_RS11895	0.29	-0.7
2,636,904	+		LRK54_RS11895	0.62	-3.1
2,636,904	+		LRK54_RS11895	0.62	-0.7
2,636,904	+		LRK54_RS11895	0.62	-0.9
2,636,904	+		LRK54_RS11895	0.62	+0.4
2,636,904	+		LRK54_RS11895	0.62	-2.2
2,636,904	+		LRK54_RS11895	0.62	+0.3
2,636,904	+		LRK54_RS11895	0.62	-0.7
2,636,904	+		LRK54_RS11895	0.62	-1.3
2,636,904	+		LRK54_RS11895	0.62	-1.1
2,636,904	+		LRK54_RS11895	0.62	+0.3
2,636,904	+		LRK54_RS11895	0.62	-0.2
2,636,904	+		LRK54_RS11895	0.62	+0.5
2,636,904	+		LRK54_RS11895	0.62	+0.7
2,636,904	+		LRK54_RS11895	0.62	+2.0
2,636,904	+		LRK54_RS11895	0.62	+2.4
2,636,904	+		LRK54_RS11895	0.62	+0.8
2,636,905	-		LRK54_RS11895	0.62	+0.4
2,636,905	-		LRK54_RS11895	0.62	+0.5
2,636,905	-		LRK54_RS11895	0.62	+2.3
2,636,905	-		LRK54_RS11895	0.62	+1.0
2,636,905	-		LRK54_RS11895	0.62	+0.8
2,636,905	-		LRK54_RS11895	0.62	+3.0
2,636,905	-		LRK54_RS11895	0.62	-0.0
2,636,905	-		LRK54_RS11895	0.62	-0.6
2,636,905	-		LRK54_RS11895	0.62	-0.1
2,636,905	-		LRK54_RS11895	0.62	-0.2
2,636,905	-		LRK54_RS11895	0.62	-2.3
2,636,905	-		LRK54_RS11895	0.62	-0.2
2,636,905	-		LRK54_RS11895	0.62	+0.1
2,636,905	-		LRK54_RS11895	0.62	-0.1
2,636,905	-		LRK54_RS11895	0.62	+0.1
2,636,905	-		LRK54_RS11895	0.62	+1.5
2,636,905	-		LRK54_RS11895	0.62	-0.0
2,636,905	-		LRK54_RS11895	0.62	-1.9
2,636,905	-		LRK54_RS11895	0.62	+1.5
2,637,143	+				-0.5
2,637,143	+				-0.4
2,637,143	+				+1.0
2,637,143	+				+3.8
2,637,143	+				+1.2
2,637,143	+				+0.5
2,637,143	+				-0.6
2,637,143	+				+1.3
2,637,144	-				+0.1
2,637,144	-				-1.4
2,637,144	-				-0.2
2,637,144	-				+0.6
2,637,144	-				-1.2
2,637,144	-				-0.4
2,637,144	-				-0.6
2,637,144	-				-1.1
2,637,144	-				+0.4
2,637,144	-				-1.9