Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10075

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
2,213,569	+				+1.8
2,213,569	+				-0.6
2,213,569	+				-0.9
2,213,569	+				-1.9
2,213,569	+				-0.5
2,213,569	+				+0.2
2,213,569	+				-1.0
2,213,569	+				-1.9
2,213,569	+				+0.9
2,213,570	-				+0.3
2,213,570	-				-2.2
2,213,570	-				-0.8
2,213,570	-				+0.6
2,213,570	-				-1.6
2,213,570	-				+0.4
2,213,570	-				+1.0
2,213,570	-				+0.7
2,213,570	-				-0.9
2,213,570	-				+0.4
2,213,570	-				-1.0
2,213,570	-				+0.4
2,213,570	-				-0.9
2,213,570	-				-1.1
2,213,570	-				-0.1
2,213,570	-				+0.1
2,213,570	-				-0.1
2,213,570	-				-2.9
2,213,570	-				-1.0
2,213,570	-				+0.7
2,213,570	-				-0.4
2,213,570	-				-0.2
2,213,606	+				-0.6
2,213,606	+				-0.4
2,213,606	+				+3.3
2,213,606	+				-0.8
2,213,606	+				+0.8
2,213,606	+				+1.0
2,213,606	+				-1.3
2,213,606	+				+0.0
2,213,606	+				-1.5
2,213,606	+				-1.2
2,213,606	+				+0.3
2,213,606	+				+1.0
2,213,606	+				+0.5
2,213,606	+				+0.1
2,213,606	+				+1.3
2,213,606	+				+0.1
2,213,606	+				+3.3
2,213,606	+				+0.1
2,213,606	+				+0.4
2,213,606	+				+1.3
2,213,606	+				+0.4
2,213,606	+				-0.2
2,213,606	+				-4.2
2,213,606	+				-0.8
2,213,606	+				+2.2
2,213,606	+				+0.1
2,213,606	+				-0.2
2,213,606	+				+1.0
2,213,607	-				+0.0
2,213,607	-				+0.3
2,213,607	-				+0.0
2,213,607	-				+2.2
2,213,607	-				-1.4
2,213,607	-				-0.2
2,213,607	-				-0.7
2,213,607	-				-0.3
2,213,607	-				+2.3
2,213,607	-				-0.9
2,213,607	-				-1.4
2,213,607	-				-0.6
2,213,607	-				+0.4
2,213,607	-				+1.9
2,213,607	-				+0.0
2,213,607	-				+2.8
2,213,607	-				-2.5
2,213,607	-				+0.8
2,213,607	-				-0.2
2,213,607	-				-1.4
2,213,607	-				-0.4
2,213,607	-				-1.1
2,213,607	-				-1.3
2,213,607	-				-0.9
2,213,607	-				-1.0
2,213,607	-				+2.3
2,213,818	+		LRK54_RS10070	0.24	-1.3
2,213,818	+		LRK54_RS10070	0.24	-2.0
2,213,818	+		LRK54_RS10070	0.24	+0.3
2,213,818	+		LRK54_RS10070	0.24	-1.5
2,213,818	+		LRK54_RS10070	0.24	+1.1
2,213,819	-		LRK54_RS10070	0.24	-0.1
2,213,819	-		LRK54_RS10070	0.24	-2.3
2,213,819	-		LRK54_RS10070	0.24	-0.5
2,213,819	-		LRK54_RS10070	0.24	-2.2
2,213,819	-		LRK54_RS10070	0.24	-1.0
2,213,819	-		LRK54_RS10070	0.24	-0.3
2,213,839	+		LRK54_RS10070	0.26	-0.8
2,213,839	+		LRK54_RS10070	0.26	+0.7
2,213,839	+		LRK54_RS10070	0.26	-0.2
2,213,839	+		LRK54_RS10070	0.26	-1.5
2,213,840	-		LRK54_RS10070	0.27	-0.8
2,213,840	-		LRK54_RS10070	0.27	+0.1
2,213,840	-		LRK54_RS10070	0.27	+2.8
2,213,840	-		LRK54_RS10070	0.27	+0.1
2,213,840	-		LRK54_RS10070	0.27	-2.3
2,213,840	-		LRK54_RS10070	0.27	-0.4
2,213,840	-		LRK54_RS10070	0.27	-2.3
2,213,851	+		LRK54_RS10070	0.28	-2.7
2,213,851	+		LRK54_RS10070	0.28	-1.6
2,213,851	+		LRK54_RS10070	0.28	-0.5
2,213,851	+		LRK54_RS10070	0.28	+0.4
2,213,851	+		LRK54_RS10070	0.28	-0.9
2,213,851	+		LRK54_RS10070	0.28	+0.3
2,213,851	+		LRK54_RS10070	0.28	+1.5
2,213,851	+		LRK54_RS10070	0.28	-0.4
2,213,851	+		LRK54_RS10070	0.28	-0.9
2,213,851	+		LRK54_RS10070	0.28	+0.4
2,213,851	+		LRK54_RS10070	0.28	-0.2
2,213,851	+		LRK54_RS10070	0.28	-0.1
2,213,851	+		LRK54_RS10070	0.28	-1.3
2,213,851	+		LRK54_RS10070	0.28	+0.3
2,213,851	+		LRK54_RS10070	0.28	+0.3
2,213,851	+		LRK54_RS10070	0.28	-1.4
2,213,851	+		LRK54_RS10070	0.28	-1.8
2,213,851	+		LRK54_RS10070	0.28	-0.3
2,213,851	+		LRK54_RS10070	0.28	+1.4
2,213,851	+		LRK54_RS10070	0.28	-1.5
2,213,852	-		LRK54_RS10070	0.28	-1.9
2,213,852	-		LRK54_RS10070	0.28	+0.0
2,213,852	-		LRK54_RS10070	0.28	-0.3
2,213,852	-		LRK54_RS10070	0.28	+0.3
2,213,852	-		LRK54_RS10070	0.28	-1.3
2,213,852	-		LRK54_RS10070	0.28	-0.6
2,213,852	-		LRK54_RS10070	0.28	-0.6
2,213,852	-		LRK54_RS10070	0.28	+0.1
2,213,852	-		LRK54_RS10070	0.28	-0.1
2,213,852	-		LRK54_RS10070	0.28	-0.8
2,213,852	-		LRK54_RS10070	0.28	-2.9
2,213,852	-		LRK54_RS10070	0.28	+0.7
2,213,852	-		LRK54_RS10070	0.28	-0.1
2,214,373	+		LRK54_RS10070	0.89	-1.4
2,214,373	+		LRK54_RS10070	0.89	-0.7
2,214,373	+		LRK54_RS10070	0.89	-2.3
2,214,373	+		LRK54_RS10070	0.89	-1.4
2,214,373	+		LRK54_RS10070	0.89	+1.5
2,214,373	+		LRK54_RS10070	0.89	-0.5
2,214,373	+		LRK54_RS10070	0.89	-0.2
2,214,373	+		LRK54_RS10070	0.89	-0.2
2,214,373	+		LRK54_RS10070	0.89	-0.5
2,214,373	+		LRK54_RS10070	0.89	-0.0
2,214,373	+		LRK54_RS10070	0.89	-1.5
2,214,373	+		LRK54_RS10070	0.89	-1.6
2,214,373	+		LRK54_RS10070	0.89	-1.4
2,214,373	+		LRK54_RS10070	0.89	+0.0
2,214,373	+		LRK54_RS10070	0.89	-0.7
2,214,373	+		LRK54_RS10070	0.89	-2.0
2,214,373	+		LRK54_RS10070	0.89	+0.1
2,214,373	+		LRK54_RS10070	0.89	+1.1
2,214,373	+		LRK54_RS10070	0.89	+0.1
2,214,373	+		LRK54_RS10070	0.89	+0.1
2,214,374	-		LRK54_RS10070	0.89	-2.5
2,214,374	-		LRK54_RS10070	0.89	-0.0
2,214,374	-		LRK54_RS10070	0.89	-1.8
2,214,374	-		LRK54_RS10070	0.89	+0.1
2,214,374	-		LRK54_RS10070	0.89	-1.0
2,214,374	-		LRK54_RS10070	0.89	+1.2
2,214,374	-		LRK54_RS10070	0.89	-0.2
2,214,374	-		LRK54_RS10070	0.89	-1.9
2,214,374	-		LRK54_RS10070	0.89	+0.9
2,214,374	-		LRK54_RS10070	0.89	-2.0
2,214,374	-		LRK54_RS10070	0.89	+1.0
2,214,374	-		LRK54_RS10070	0.89	-0.2
2,214,374	-		LRK54_RS10070	0.89	-1.0
2,214,374	-		LRK54_RS10070	0.89	-2.4
2,214,374	-		LRK54_RS10070	0.89	-1.2
2,214,374	-		LRK54_RS10070	0.89	+3.8
2,214,374	-		LRK54_RS10070	0.89	-0.5
2,214,374	-		LRK54_RS10070	0.89	-0.7
2,214,388	+				-0.8
2,214,388	+				-0.6
2,214,388	+				-1.3
2,214,388	+				-2.2
2,214,388	+				-1.2
2,214,388	+				+0.7
2,214,388	+				-1.0
2,214,388	+				+0.3
2,214,388	+				-0.7
2,214,388	+				-1.3
2,214,388	+				-0.6
2,214,388	+				-3.0
2,214,388	+				+0.5
2,214,389	-				-1.6
2,214,389	-				-2.0
2,214,389	-				+0.6
2,214,389	-				-0.9
2,214,389	-				+0.5
2,214,389	-				-0.0
2,214,389	-				-1.8
2,214,389	-				-0.6
2,214,389	-				+0.1
2,214,395	-				-0.6
2,214,395	-				-1.9
2,214,524	+				+0.1
2,214,524	+				+1.3
2,214,524	+				+0.8
2,214,524	+				-0.5
2,214,525	-				-0.6
2,214,525	-				-0.6
2,214,686	+		LRK54_RS10075	0.51	-1.4
2,214,686	+		LRK54_RS10075	0.51	+0.0
2,214,687	-		LRK54_RS10075	0.51	-1.4
2,214,687	-		LRK54_RS10075	0.51	+1.0
2,214,687	-		LRK54_RS10075	0.51	-0.4
2,214,856	+				-0.7
2,214,877	+				-0.6
2,214,877	+				+0.1