Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08895

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
1,932,718	+				-0.3
1,932,718	+				-1.0
1,932,897	+				-0.7
1,932,931	-				-0.4
1,932,931	-				-2.2
1,932,936	+				-0.7
1,932,937	-				+1.3
1,932,979	+				+0.3
1,932,980	-				-0.3
1,932,980	-				+0.8
1,932,985	+				-1.6
1,932,985	+				+3.8
1,932,985	+				-0.1
1,932,985	+				+0.4
1,932,985	+				-0.7
1,932,985	+				-0.9
1,932,985	+				-0.1
1,932,985	+				-0.9
1,932,986	-				-0.4
1,932,986	-				+1.1
1,932,986	-				+0.4
1,932,986	-				-0.3
1,933,008	+				-1.4
1,933,008	+				-0.3
1,933,008	+				-2.1
1,933,014	+				+0.7
1,933,014	+				-1.2
1,933,091	+				-0.8
1,933,092	-				-0.5
1,933,154	+				-2.0
1,933,154	+				+0.7
1,933,155	-				+0.8
1,933,161	-				-0.7
1,933,196	+				-0.9
1,933,196	+				-1.5
1,933,197	-				+0.5
1,933,197	-				+1.0
1,933,197	-				-0.0
1,933,202	+				-0.8
1,933,202	+				+0.1
1,933,203	-				-2.0
1,933,336	+				-1.0
1,933,336	+				-0.8
1,933,336	+				-1.0
1,933,337	-				+0.1
1,933,337	-				+0.4
1,933,355	-				-0.7
1,933,367	-				-2.1
1,933,391	+				-0.7
1,933,391	+				-2.0
1,933,402	+				+0.9
1,933,402	+				-2.1
1,933,403	-				+0.6
1,933,403	-				+1.1
1,933,443	+				+0.2
1,933,443	+				+0.8
1,933,443	+				-0.7
1,933,443	+				+3.8
1,933,443	+				+0.5
1,933,443	+				-2.2
1,933,443	+				-0.4
1,933,443	+				+0.3
1,933,444	-				-0.4
1,933,444	-				-0.3
1,933,444	-				-1.7
1,933,444	-				+0.4
1,933,457	+				-0.7
1,933,458	-				-0.9
1,933,461	+				-0.6
1,933,461	+				+1.1
1,933,461	+				-1.2
1,933,500	-				-1.4
1,933,558	-				-0.5
1,933,561	-				+0.1
1,933,583	+				+0.1
1,933,583	+				-1.7
1,933,607	+				-2.3
1,933,608	-				+1.3
1,933,629	+				+1.8
1,933,641	+				-0.5
1,933,641	+				-0.6
1,933,674	+				-1.2
1,933,674	+				-0.8
1,933,674	+				-0.6
1,933,675	-				+3.8
1,933,675	-				-1.3
1,933,675	-				+1.0
1,933,678	+				+3.8
1,933,679	-				-0.2
1,933,679	-				-3.0
1,933,679	-				+0.1
1,933,679	-				+0.1
1,933,711	+				-0.3
1,933,711	+				+0.0
1,933,711	+				-1.5
1,933,712	-				+1.5
1,933,727	+		LRK54_RS08895	0.11	-2.0
1,933,727	+		LRK54_RS08895	0.11	+0.2
1,933,775	-		LRK54_RS08895	0.28	-0.5
1,933,832	+		LRK54_RS08895	0.47	-2.1
1,933,832	+		LRK54_RS08895	0.47	+2.8
1,933,833	-		LRK54_RS08895	0.48	-2.1
1,933,833	-		LRK54_RS08895	0.48	-0.3
1,933,972	+				+0.1
1,933,972	+				-0.8
1,933,972	+				-0.2
1,933,972	+				-2.1
1,933,973	-				-1.4
1,933,984	+				-0.3
1,933,984	+				-0.3
1,933,984	+				-1.4
1,933,985	-				-1.3
1,933,985	-				-0.5
1,933,985	-				+0.2
1,934,040	+				-1.2
1,934,040	+				+0.4
1,934,040	+				+0.5
1,934,040	+				+0.5
1,934,041	-				-0.4
1,934,052	+				+0.7
1,934,052	+				-0.8
1,934,052	+				+0.7
1,934,052	+				+1.5
1,934,052	+				-0.2
1,934,052	+				-1.4
1,934,052	+				-1.0
1,934,052	+				-3.2
1,934,052	+				-0.8
1,934,052	+				-1.0
1,934,052	+				-0.7
1,934,052	+				-0.5
1,934,053	-				+0.2
1,934,053	-				+1.9
1,934,053	-				-2.5
1,934,053	-				-0.9
1,934,053	-				-1.4
1,934,053	-				-1.1
1,934,053	-				+0.0
1,934,053	-				+0.0
1,934,053	-				-1.9
1,934,053	-				-0.7
1,934,053	-				-1.2
1,934,053	-				-0.6
1,934,053	-				-1.6
1,934,053	-				-0.7
1,934,053	-				-0.8
1,934,056	+				+1.2
1,934,056	+				-0.8
1,934,056	+				+1.0
1,934,057	-				+0.5
1,934,057	-				+0.2
1,934,057	-				-1.4
1,934,057	-				+0.5
1,934,066	-				-3.7
1,934,151	+				-0.4
1,934,152	-				+0.4
1,934,152	-				-1.2
1,934,152	-				+2.2
1,934,212	+				-2.6
1,934,213	-				-0.7
1,934,231	+				-0.6
1,934,232	-				+3.8
1,934,232	-				+0.4
1,934,232	-				-2.2
1,934,232	-				-0.2
1,934,232	-				-2.8
1,934,232	-				-0.3
1,934,258	+				+0.2
1,934,258	+				-0.1
1,934,259	-				-1.1
1,934,259	-				+1.0
1,934,259	-				-0.4
1,934,259	-				+0.4
1,934,301	-				+0.7
1,934,561	+				+1.2
1,934,588	-				-1.3
1,934,588	-				-0.9
1,934,588	-				-1.2
1,934,588	-				-1.3
1,934,617	+				-1.1
1,934,617	+				-0.6
1,934,617	+				-1.6
1,934,617	+				+1.7
1,934,617	+				+0.5
1,934,656	+				-1.9
1,934,656	+				-0.4
1,934,656	+				-0.8
1,934,656	+				-0.6
1,934,656	+				+0.8
1,934,656	+				-0.5
1,934,657	-				-1.9
1,934,657	-				-0.1
1,934,657	-				-1.2
1,934,719	-				-1.3
1,934,719	-				-0.5
1,934,719	-				-0.2
1,934,739	+				+0.4
1,934,739	+				-0.9
1,934,739	+				-0.6
1,934,739	+				-0.8
1,934,739	+				+1.5
1,934,739	+				-0.8
1,934,739	+				-0.4
1,934,739	+				-0.3
1,934,739	+				+1.3
1,934,739	+				-1.3
1,934,739	+				-0.9
1,934,739	+				-0.6
1,934,768	+				+2.6
1,934,768	+				+0.1
1,934,830	+				-2.6
1,934,830	+				-1.6
1,934,830	+				-2.3
1,934,830	+				-0.6
1,934,830	+				+0.1
1,934,830	+				-0.3
1,934,831	-				+1.0
1,934,831	-				+0.9
1,934,854	+		LRK54_RS08905	0.11	-0.2
1,934,854	+		LRK54_RS08905	0.11	-1.2
1,934,854	+		LRK54_RS08905	0.11	+0.6
1,934,854	+		LRK54_RS08905	0.11	-0.5
1,934,855	-		LRK54_RS08905	0.11	-0.2
1,934,855	-		LRK54_RS08905	0.11	-0.6
1,934,855	-		LRK54_RS08905	0.11	-0.9
1,934,855	-		LRK54_RS08905	0.11	+1.2
1,934,855	-		LRK54_RS08905	0.11	-2.2
1,934,855	-		LRK54_RS08905	0.11	-1.7
1,934,855	-		LRK54_RS08905	0.11	-2.4
1,934,855	-		LRK54_RS08905	0.11	-0.2
1,934,855	-		LRK54_RS08905	0.11	+0.6
1,934,855	-		LRK54_RS08905	0.11	-1.0
1,934,943	+		LRK54_RS08905	0.20	+2.3
1,934,943	+		LRK54_RS08905	0.20	+0.7
1,934,943	+		LRK54_RS08905	0.20	-0.3
1,934,943	+		LRK54_RS08905	0.20	-1.8
1,934,943	+		LRK54_RS08905	0.20	-0.4
1,934,943	+		LRK54_RS08905	0.20	-2.7
1,934,944	-		LRK54_RS08905	0.20	-2.0
1,934,944	-		LRK54_RS08905	0.20	-0.6
1,934,944	-		LRK54_RS08905	0.20	-0.6
1,934,944	-		LRK54_RS08905	0.20	-2.5
1,934,944	-		LRK54_RS08905	0.20	+0.1
1,934,944	-		LRK54_RS08905	0.20	-0.3