Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07860

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
1,720,075	+				+0.2
1,720,075	+				-0.9
1,720,075	+				-0.4
1,720,075	+				-0.7
1,720,076	-				+0.1
1,720,076	-				-0.3
1,720,093	+				-0.9
1,720,093	+				-0.8
1,720,093	+				-0.3
1,720,093	+				-0.3
1,720,093	+				-0.1
1,720,093	+				+1.5
1,720,093	+				-0.4
1,720,094	-				-0.6
1,720,094	-				+0.0
1,720,094	-				+2.0
1,720,094	-				+0.6
1,720,094	-				+1.4
1,720,094	-				-1.3
1,720,094	-				+0.8
1,720,130	+				-0.7
1,720,130	+				+1.1
1,720,130	+				+0.0
1,720,130	+				-1.8
1,720,130	+				-0.8
1,720,130	+				-0.6
1,720,130	+				-2.1
1,720,131	-				-0.0
1,720,131	-				+2.0
1,720,131	-				-1.7
1,720,131	-				-1.4
1,720,131	-				-0.6
1,720,131	-				-0.3
1,720,131	-				-0.3
1,720,131	-				+1.5
1,720,131	-				+0.2
1,720,737	+		LRK54_RS07860	0.55	-2.5
1,720,737	+		LRK54_RS07860	0.55	-1.1
1,720,737	+		LRK54_RS07860	0.55	+0.0
1,720,737	+		LRK54_RS07860	0.55	-0.9
1,720,737	+		LRK54_RS07860	0.55	-1.5
1,720,737	+		LRK54_RS07860	0.55	-1.2
1,720,737	+		LRK54_RS07860	0.55	-0.7
1,720,737	+		LRK54_RS07860	0.55	-0.2
1,720,737	+		LRK54_RS07860	0.55	-0.5
1,720,737	+		LRK54_RS07860	0.55	+0.8
1,720,737	+		LRK54_RS07860	0.55	-2.1
1,720,737	+		LRK54_RS07860	0.55	+0.5
1,720,737	+		LRK54_RS07860	0.55	-1.2
1,720,737	+		LRK54_RS07860	0.55	-1.0
1,720,737	+		LRK54_RS07860	0.55	-0.4
1,720,737	+		LRK54_RS07860	0.55	-1.3
1,720,737	+		LRK54_RS07860	0.55	-1.1
1,720,737	+		LRK54_RS07860	0.55	-1.1
1,720,738	-		LRK54_RS07860	0.55	-0.1
1,720,738	-		LRK54_RS07860	0.55	-4.0
1,720,738	-		LRK54_RS07860	0.55	-2.9
1,720,738	-		LRK54_RS07860	0.55	-1.2
1,720,738	-		LRK54_RS07860	0.55	-3.6
1,720,738	-		LRK54_RS07860	0.55	-2.1
1,720,738	-		LRK54_RS07860	0.55	+0.9
1,720,738	-		LRK54_RS07860	0.55	-1.9
1,720,738	-		LRK54_RS07860	0.55	-0.6
1,720,738	-		LRK54_RS07860	0.55	-0.1
1,720,738	-		LRK54_RS07860	0.55	-1.0
1,720,738	-		LRK54_RS07860	0.55	-1.9
1,720,738	-		LRK54_RS07860	0.55	-1.8
1,720,738	-		LRK54_RS07860	0.55	+2.8
1,720,738	-		LRK54_RS07860	0.55	-0.2
1,720,738	-		LRK54_RS07860	0.55	+4.4
1,720,738	-		LRK54_RS07860	0.55	-2.9
1,720,738	-		LRK54_RS07860	0.55	-1.0
1,720,738	-		LRK54_RS07860	0.55	-0.9
1,720,738	-		LRK54_RS07860	0.55	-2.2
1,720,953	+		LRK54_RS07860	0.76	-2.1
1,720,954	-		LRK54_RS07860	0.76	-2.5
1,721,016	+		LRK54_RS07860	0.82	-1.2
1,721,016	+		LRK54_RS07860	0.82	-0.9
1,721,016	+		LRK54_RS07860	0.82	+0.2
1,721,016	+		LRK54_RS07860	0.82	-0.2
1,721,016	+		LRK54_RS07860	0.82	+1.9
1,721,016	+		LRK54_RS07860	0.82	-1.5
1,721,016	+		LRK54_RS07860	0.82	-0.6
1,721,016	+		LRK54_RS07860	0.82	-1.0
1,721,016	+		LRK54_RS07860	0.82	+0.0
1,721,016	+		LRK54_RS07860	0.82	-1.2
1,721,016	+		LRK54_RS07860	0.82	-0.4
1,721,016	+		LRK54_RS07860	0.82	-1.5
1,721,016	+		LRK54_RS07860	0.82	-0.8
1,721,016	+		LRK54_RS07860	0.82	-2.4
1,721,016	+		LRK54_RS07860	0.82	-0.2
1,721,016	+		LRK54_RS07860	0.82	+0.8
1,721,016	+		LRK54_RS07860	0.82	-1.6
1,721,016	+		LRK54_RS07860	0.82	-2.3
1,721,016	+		LRK54_RS07860	0.82	-2.3
1,721,016	+		LRK54_RS07860	0.82	-0.7
1,721,017	-		LRK54_RS07860	0.82	-1.4
1,721,017	-		LRK54_RS07860	0.82	-1.4
1,721,017	-		LRK54_RS07860	0.82	-0.4
1,721,017	-		LRK54_RS07860	0.82	-2.0
1,721,017	-		LRK54_RS07860	0.82	-0.4
1,721,017	-		LRK54_RS07860	0.82	-0.2
1,721,017	-		LRK54_RS07860	0.82	-2.2
1,721,017	-		LRK54_RS07860	0.82	-0.3
1,721,017	-		LRK54_RS07860	0.82	-3.1
1,721,017	-		LRK54_RS07860	0.82	-0.8
1,721,017	-		LRK54_RS07860	0.82	+0.1
1,721,017	-		LRK54_RS07860	0.82	-0.4
1,721,017	-		LRK54_RS07860	0.82	+2.0
1,721,017	-		LRK54_RS07860	0.82	+0.1
1,721,017	-		LRK54_RS07860	0.82	+0.7
1,721,017	-		LRK54_RS07860	0.82	-3.5
1,721,017	-		LRK54_RS07860	0.82	-0.3
1,721,017	-		LRK54_RS07860	0.82	-0.0
1,721,017	-		LRK54_RS07860	0.82	+0.0
1,721,025	+		LRK54_RS07860	0.83	-1.1
1,721,025	+		LRK54_RS07860	0.83	-3.3
1,721,026	-		LRK54_RS07860	0.83	-0.5
1,721,147	+				-2.4
1,721,147	+				-1.5
1,721,147	+				-1.8
1,721,147	+				-1.7
1,721,147	+				-1.9
1,721,147	+				-1.0
1,721,148	-				+1.8
1,721,148	-				-0.8
1,721,148	-				-0.2
1,721,148	-				-1.2
1,721,148	-				+2.6
1,721,148	-				-2.5
1,721,148	-				-2.1
1,721,148	-				-1.5
1,721,148	-				-1.3
1,721,148	-				-2.1
1,721,148	-				-0.9
1,721,148	-				-1.8
1,721,148	-				-1.9
1,721,175	+				-2.6
1,721,175	+				-0.8
1,721,175	+				+3.8
1,721,175	+				-2.2
1,721,175	+				-1.0
1,721,175	+				-1.2
1,721,175	+				+0.4
1,721,175	+				-0.1
1,721,175	+				-1.6
1,721,175	+				-0.5
1,721,175	+				-2.1
1,721,176	-				-0.8
1,721,176	-				-1.9
1,721,176	-				-0.5
1,721,176	-				-2.3
1,721,176	-				+0.8
1,721,176	-				-1.9
1,721,176	-				-1.2
1,721,176	-				-1.2
1,721,176	-				+0.2
1,721,176	-				-0.7
1,721,176	-				-2.1
1,721,176	-				-0.7
1,721,176	-				-2.8
1,721,176	-				-2.3
1,721,176	-				-1.4
1,721,176	-				-0.7
1,721,241	+				-1.1
1,721,241	+				-2.3
1,721,241	+				-1.8
1,721,241	+				-0.7
1,721,241	+				-1.0
1,721,241	+				-1.2
1,721,241	+				-2.3
1,721,241	+				-0.9
1,721,241	+				-0.4
1,721,241	+				+1.5
1,721,241	+				-1.4
1,721,241	+				+0.5
1,721,241	+				-0.4
1,721,241	+				+0.1
1,721,241	+				-1.0
1,721,241	+				-0.8
1,721,241	+				-1.1
1,721,241	+				-1.5
1,721,241	+				-1.5
1,721,241	+				-0.9
1,721,241	+				-0.7
1,721,241	+				-0.1
1,721,242	-				+0.5
1,721,242	-				-0.9
1,721,242	-				+0.0
1,721,242	-				-0.6
1,721,242	-				-0.4
1,721,242	-				-0.6
1,721,242	-				-0.2
1,721,242	-				-0.5
1,721,242	-				+1.4
1,721,436	+		LRK54_RS07865	0.30	+1.5
1,721,436	+		LRK54_RS07865	0.30	-0.4
1,721,436	+		LRK54_RS07865	0.30	-1.5
1,721,436	+		LRK54_RS07865	0.30	-1.6
1,721,436	+		LRK54_RS07865	0.30	+1.5
1,721,437	-		LRK54_RS07865	0.30	+0.9
1,721,437	-		LRK54_RS07865	0.30	+0.6
1,721,437	-		LRK54_RS07865	0.30	+0.4
1,721,437	-		LRK54_RS07865	0.30	-1.1
1,721,437	-		LRK54_RS07865	0.30	+1.0
1,721,437	-		LRK54_RS07865	0.30	-1.5
1,721,437	-		LRK54_RS07865	0.30	-0.6
1,721,437	-		LRK54_RS07865	0.30	+0.5
1,721,524	-		LRK54_RS07865	0.42	+0.7
1,721,892	+				-1.6
1,721,892	+				-2.1
1,721,892	+				-0.6
1,721,892	+				-2.1
1,721,892	+				-1.1
1,721,892	+				+0.1
1,721,893	-				+1.5
1,721,893	-				-0.8
1,721,893	-				-0.4
1,721,893	-				+2.1
1,721,893	-				+0.6
1,721,893	-				-0.6
1,721,937	+				+0.6
1,721,937	+				-2.8
1,721,938	-				-0.8
1,722,032	+				-0.3
1,722,035	+				-0.3
1,722,035	+				-0.8
1,722,035	+				-0.1
1,722,036	-				-1.3
1,722,070	+				-3.9
1,722,070	+				-0.4