Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS06415 and LRK54_RS06420 are separated by 100 nucleotides LRK54_RS06420 and LRK54_RS06425 are separated by 58 nucleotides LRK54_RS06425 and LRK54_RS06430 are separated by 413 nucleotides
LRK54_RS06415: LRK54_RS06415 - hypothetical protein, at 1,371,458 to 1,372,210
_RS06415
LRK54_RS06420: LRK54_RS06420 - hypothetical protein, at 1,372,311 to 1,373,000
_RS06420
LRK54_RS06425: LRK54_RS06425 - ribonucleoside-diphosphate reductase, at 1,373,059 to 1,376,319
_RS06425
LRK54_RS06430: LRK54_RS06430 - Do family serine endopeptidase, at 1,376,733 to 1,378,139
_RS06430
Position (kb) 1373
1374
1375
1376
1377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.227 kb on - strand at 1372.230 kb on + strand at 1372.231 kb on - strand at 1372.231 kb on - strand at 1372.231 kb on - strand at 1372.231 kb on - strand at 1372.231 kb on - strand at 1372.231 kb on - strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.312 kb on + strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.313 kb on - strand at 1372.583 kb on + strand, within LRK54_RS06420 at 1372.583 kb on + strand, within LRK54_RS06420 at 1372.584 kb on - strand, within LRK54_RS06420 at 1372.584 kb on - strand, within LRK54_RS06420 at 1372.932 kb on + strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1372.933 kb on - strand at 1373.129 kb on + strand at 1373.130 kb on - strand at 1373.130 kb on - strand at 1373.130 kb on - strand at 1373.286 kb on - strand at 1373.292 kb on - strand at 1373.297 kb on + strand at 1373.297 kb on + strand at 1373.298 kb on - strand at 1373.298 kb on - strand at 1373.298 kb on - strand at 1373.324 kb on + strand at 1373.501 kb on + strand, within LRK54_RS06425 at 1373.577 kb on - strand, within LRK54_RS06425 at 1374.494 kb on + strand, within LRK54_RS06425 at 1374.859 kb on - strand, within LRK54_RS06425 at 1375.454 kb on + strand, within LRK54_RS06425 at 1375.455 kb on - strand, within LRK54_RS06425 at 1375.506 kb on - strand, within LRK54_RS06425 at 1375.836 kb on - strand, within LRK54_RS06425 at 1375.889 kb on + strand, within LRK54_RS06425 at 1375.890 kb on - strand, within LRK54_RS06425 at 1376.186 kb on + strand at 1376.240 kb on + strand at 1376.241 kb on - strand at 1376.307 kb on + strand at 1376.428 kb on - strand at 1376.428 kb on - strand at 1376.607 kb on - strand at 1376.623 kb on - strand at 1376.623 kb on - strand at 1376.623 kb on - strand at 1376.623 kb on - strand at 1376.623 kb on - strand at 1376.623 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.644 kb on - strand at 1376.949 kb on + strand, within LRK54_RS06430 at 1376.949 kb on + strand, within LRK54_RS06430 at 1376.949 kb on + strand, within LRK54_RS06430 at 1376.949 kb on + strand, within LRK54_RS06430 at 1376.949 kb on + strand, within LRK54_RS06430 at 1376.949 kb on + strand, within LRK54_RS06430 at 1376.949 kb on + strand, within LRK54_RS06430 at 1376.949 kb on + strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1376.950 kb on - strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.057 kb on + strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.058 kb on - strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.246 kb on + strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430 at 1377.247 kb on - strand, within LRK54_RS06430
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,372,227 - -1.3 1,372,227 - +0.5 1,372,227 - +1.2 1,372,227 - -1.2 1,372,227 - +1.5 1,372,227 - -0.4 1,372,227 - -0.2 1,372,227 - -1.7 1,372,227 - +3.9 1,372,227 - +0.8 1,372,227 - -1.9 1,372,227 - -1.6 1,372,227 - -1.0 1,372,227 - +2.6 1,372,227 - +2.3 1,372,227 - -0.1 1,372,227 - +1.9 1,372,227 - -0.1 1,372,230 + +0.7 1,372,231 - +0.2 1,372,231 - +2.8 1,372,231 - -1.7 1,372,231 - -0.0 1,372,231 - -0.5 1,372,231 - +2.9 1,372,312 + +0.3 1,372,312 + -0.4 1,372,312 + +3.9 1,372,312 + +0.3 1,372,312 + -0.7 1,372,312 + -1.0 1,372,312 + +1.6 1,372,312 + +0.6 1,372,312 + -0.4 1,372,312 + +0.8 1,372,313 - -0.2 1,372,313 - -0.6 1,372,313 - -0.6 1,372,313 - +0.4 1,372,313 - -0.9 1,372,313 - +1.6 1,372,313 - +0.6 1,372,313 - +0.3 1,372,313 - -0.3 1,372,313 - -2.0 1,372,313 - -1.7 1,372,313 - -0.5 1,372,313 - +0.5 1,372,313 - -0.4 1,372,313 - -0.2 1,372,313 - -1.0 1,372,313 - +0.7 1,372,313 - -0.6 1,372,313 - +0.1 1,372,313 - -0.6 1,372,313 - -1.2 1,372,313 - -0.7 1,372,313 - -1.9 1,372,583 + LRK54_RS06420 0.39 -0.6 1,372,583 + LRK54_RS06420 0.39 -0.6 1,372,584 - LRK54_RS06420 0.40 -1.0 1,372,584 - LRK54_RS06420 0.40 -1.6 1,372,932 + +0.7 1,372,933 - +2.8 1,372,933 - +0.4 1,372,933 - +0.6 1,372,933 - -0.6 1,372,933 - -0.3 1,372,933 - -0.3 1,372,933 - -2.2 1,372,933 - -0.4 1,372,933 - -1.2 1,372,933 - -1.0 1,373,129 + -0.2 1,373,130 - +0.4 1,373,130 - -0.0 1,373,130 - +1.3 1,373,286 - +1.9 1,373,292 - +0.4 1,373,297 + +0.2 1,373,297 + +0.6 1,373,298 - -0.4 1,373,298 - +1.1 1,373,298 - +0.4 1,373,324 + -0.2 1,373,501 + LRK54_RS06425 0.14 -0.0 1,373,577 - LRK54_RS06425 0.16 +1.3 1,374,494 + LRK54_RS06425 0.44 +0.6 1,374,859 - LRK54_RS06425 0.55 +0.9 1,375,454 + LRK54_RS06425 0.73 +1.1 1,375,455 - LRK54_RS06425 0.73 +0.4 1,375,506 - LRK54_RS06425 0.75 -0.6 1,375,836 - LRK54_RS06425 0.85 -0.8 1,375,889 + LRK54_RS06425 0.87 +1.6 1,375,890 - LRK54_RS06425 0.87 -0.2 1,376,186 + +1.1 1,376,240 + +0.4 1,376,241 - -0.4 1,376,307 + +0.2 1,376,428 - +0.9 1,376,428 - +1.0 1,376,607 - +1.3 1,376,623 - -1.4 1,376,623 - -0.6 1,376,623 - +1.1 1,376,623 - -3.1 1,376,623 - +1.0 1,376,623 - +0.7 1,376,644 - -0.5 1,376,644 - +2.3 1,376,644 - -0.5 1,376,644 - +1.5 1,376,644 - -1.5 1,376,644 - -1.5 1,376,644 - -0.9 1,376,644 - +0.0 1,376,644 - -1.4 1,376,644 - -0.4 1,376,644 - -1.2 1,376,644 - +0.4 1,376,644 - +2.9 1,376,949 + LRK54_RS06430 0.15 -1.1 1,376,949 + LRK54_RS06430 0.15 -0.0 1,376,949 + LRK54_RS06430 0.15 -0.1 1,376,949 + LRK54_RS06430 0.15 -0.7 1,376,949 + LRK54_RS06430 0.15 -0.7 1,376,949 + LRK54_RS06430 0.15 -0.5 1,376,949 + LRK54_RS06430 0.15 -0.0 1,376,949 + LRK54_RS06430 0.15 -0.6 1,376,950 - LRK54_RS06430 0.15 +1.1 1,376,950 - LRK54_RS06430 0.15 -0.2 1,376,950 - LRK54_RS06430 0.15 -1.6 1,376,950 - LRK54_RS06430 0.15 -0.2 1,376,950 - LRK54_RS06430 0.15 -1.2 1,376,950 - LRK54_RS06430 0.15 -1.3 1,376,950 - LRK54_RS06430 0.15 +1.1 1,376,950 - LRK54_RS06430 0.15 +0.2 1,376,950 - LRK54_RS06430 0.15 +0.3 1,376,950 - LRK54_RS06430 0.15 +0.5 1,377,057 + LRK54_RS06430 0.23 -1.3 1,377,057 + LRK54_RS06430 0.23 -0.6 1,377,057 + LRK54_RS06430 0.23 +0.9 1,377,057 + LRK54_RS06430 0.23 -0.4 1,377,057 + LRK54_RS06430 0.23 -1.8 1,377,057 + LRK54_RS06430 0.23 -1.0 1,377,057 + LRK54_RS06430 0.23 -2.4 1,377,057 + LRK54_RS06430 0.23 -1.1 1,377,057 + LRK54_RS06430 0.23 +1.4 1,377,057 + LRK54_RS06430 0.23 -0.5 1,377,058 - LRK54_RS06430 0.23 -1.0 1,377,058 - LRK54_RS06430 0.23 +0.7 1,377,058 - LRK54_RS06430 0.23 -1.8 1,377,058 - LRK54_RS06430 0.23 +0.1 1,377,058 - LRK54_RS06430 0.23 -1.3 1,377,058 - LRK54_RS06430 0.23 -0.4 1,377,058 - LRK54_RS06430 0.23 -0.3 1,377,058 - LRK54_RS06430 0.23 -0.0 1,377,058 - LRK54_RS06430 0.23 -1.8 1,377,058 - LRK54_RS06430 0.23 +0.1 1,377,058 - LRK54_RS06430 0.23 -1.3 1,377,058 - LRK54_RS06430 0.23 +1.8 1,377,058 - LRK54_RS06430 0.23 +2.9 1,377,058 - LRK54_RS06430 0.23 -0.9 1,377,058 - LRK54_RS06430 0.23 +1.8 1,377,246 + LRK54_RS06430 0.36 -0.0 1,377,246 + LRK54_RS06430 0.36 -1.4 1,377,246 + LRK54_RS06430 0.36 +0.4 1,377,246 + LRK54_RS06430 0.36 -2.6 1,377,246 + LRK54_RS06430 0.36 +0.4 1,377,246 + LRK54_RS06430 0.36 -1.6 1,377,246 + LRK54_RS06430 0.36 +0.6 1,377,246 + LRK54_RS06430 0.36 -0.5 1,377,246 + LRK54_RS06430 0.36 -1.2 1,377,246 + LRK54_RS06430 0.36 +0.3 1,377,246 + LRK54_RS06430 0.36 +0.1 1,377,246 + LRK54_RS06430 0.36 +0.0 1,377,246 + LRK54_RS06430 0.36 +0.9 1,377,246 + LRK54_RS06430 0.36 +0.6 1,377,246 + LRK54_RS06430 0.36 -0.2 1,377,246 + LRK54_RS06430 0.36 +1.0 1,377,246 + LRK54_RS06430 0.36 +0.1 1,377,246 + LRK54_RS06430 0.36 -0.3 1,377,246 + LRK54_RS06430 0.36 -0.2 1,377,246 + LRK54_RS06430 0.36 +0.4 1,377,246 + LRK54_RS06430 0.36 -1.3 1,377,247 - LRK54_RS06430 0.37 -0.4 1,377,247 - LRK54_RS06430 0.37 +1.1 1,377,247 - LRK54_RS06430 0.37 -0.6 1,377,247 - LRK54_RS06430 0.37 +0.1 1,377,247 - LRK54_RS06430 0.37 -0.8 1,377,247 - LRK54_RS06430 0.37 -0.1 1,377,247 - LRK54_RS06430 0.37 -0.6 1,377,247 - LRK54_RS06430 0.37 +3.4 1,377,247 - LRK54_RS06430 0.37 -1.6 1,377,247 - LRK54_RS06430 0.37 +1.4 1,377,247 - LRK54_RS06430 0.37 -3.2 1,377,247 - LRK54_RS06430 0.37 -1.7 1,377,247 - LRK54_RS06430 0.37 +0.3 1,377,247 - LRK54_RS06430 0.37 -0.5 1,377,247 - LRK54_RS06430 0.37 -3.4 1,377,247 - LRK54_RS06430 0.37 -1.3 1,377,247 - LRK54_RS06430 0.37 +3.9 1,377,247 - LRK54_RS06430 0.37 -1.5
Or see this region's nucleotide sequence