Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05350

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
1,150,237	+		LRK54_RS05345	0.68	-1.7
1,150,237	+		LRK54_RS05345	0.68	-0.4
1,150,237	+		LRK54_RS05345	0.68	+0.9
1,150,237	+		LRK54_RS05345	0.68	+0.1
1,150,237	+		LRK54_RS05345	0.68	-1.4
1,150,237	+		LRK54_RS05345	0.68	+1.0
1,150,237	+		LRK54_RS05345	0.68	+0.6
1,150,237	+		LRK54_RS05345	0.68	-1.0
1,150,237	+		LRK54_RS05345	0.68	+2.2
1,150,238	-		LRK54_RS05345	0.68	+0.9
1,150,238	-		LRK54_RS05345	0.68	-1.1
1,150,238	-		LRK54_RS05345	0.68	-0.2
1,150,238	-		LRK54_RS05345	0.68	-0.7
1,150,238	-		LRK54_RS05345	0.68	+1.3
1,150,238	-		LRK54_RS05345	0.68	+0.2
1,150,238	-		LRK54_RS05345	0.68	+0.4
1,150,238	-		LRK54_RS05345	0.68	-0.1
1,150,278	+		LRK54_RS05345	0.70	-0.8
1,150,291	+		LRK54_RS05345	0.70	+1.4
1,150,291	+		LRK54_RS05345	0.70	-0.7
1,150,291	+		LRK54_RS05345	0.70	-2.6
1,150,292	-		LRK54_RS05345	0.70	+0.5
1,150,292	-		LRK54_RS05345	0.70	+0.1
1,150,292	-		LRK54_RS05345	0.70	+0.7
1,150,292	-		LRK54_RS05345	0.70	-0.6
1,150,444	+		LRK54_RS05345	0.75	+0.5
1,150,444	+		LRK54_RS05345	0.75	-0.5
1,150,444	+		LRK54_RS05345	0.75	+0.2
1,150,445	-		LRK54_RS05345	0.75	-0.2
1,150,445	-		LRK54_RS05345	0.75	+0.7
1,150,471	+		LRK54_RS05345	0.76	-2.0
1,150,471	+		LRK54_RS05345	0.76	-2.1
1,150,471	+		LRK54_RS05345	0.76	+1.3
1,150,471	+		LRK54_RS05345	0.76	-0.4
1,150,471	+		LRK54_RS05345	0.76	+2.0
1,150,472	-		LRK54_RS05345	0.76	-0.1
1,150,472	-		LRK54_RS05345	0.76	+0.2
1,150,480	+		LRK54_RS05345	0.76	-1.6
1,150,480	+		LRK54_RS05345	0.76	-2.2
1,150,480	+		LRK54_RS05345	0.76	-1.2
1,150,480	+		LRK54_RS05345	0.76	-0.8
1,150,480	+		LRK54_RS05345	0.76	-0.3
1,150,480	+		LRK54_RS05345	0.76	-1.7
1,150,480	+		LRK54_RS05345	0.76	-2.1
1,150,481	-		LRK54_RS05345	0.76	+0.4
1,150,481	-		LRK54_RS05345	0.76	-2.0
1,150,481	-		LRK54_RS05345	0.76	+1.5
1,150,481	-		LRK54_RS05345	0.76	-1.1
1,150,481	-		LRK54_RS05345	0.76	-0.3
1,150,498	+		LRK54_RS05345	0.77	+0.7
1,150,498	+		LRK54_RS05345	0.77	-0.7
1,150,498	+		LRK54_RS05345	0.77	-0.9
1,150,498	+		LRK54_RS05345	0.77	-1.4
1,150,498	+		LRK54_RS05345	0.77	-0.2
1,150,498	+		LRK54_RS05345	0.77	+0.1
1,150,498	+		LRK54_RS05345	0.77	-0.5
1,150,499	-		LRK54_RS05345	0.77	+1.0
1,150,537	+		LRK54_RS05345	0.78	+0.1
1,150,537	+		LRK54_RS05345	0.78	-1.3
1,150,537	+		LRK54_RS05345	0.78	-0.3
1,150,537	+		LRK54_RS05345	0.78	+0.5
1,150,537	+		LRK54_RS05345	0.78	-0.1
1,150,537	+		LRK54_RS05345	0.78	-0.8
1,150,537	+		LRK54_RS05345	0.78	-0.5
1,150,537	+		LRK54_RS05345	0.78	-0.5
1,150,537	+		LRK54_RS05345	0.78	-1.3
1,150,537	+		LRK54_RS05345	0.78	-0.2
1,150,537	+		LRK54_RS05345	0.78	+0.3
1,150,537	+		LRK54_RS05345	0.78	-1.1
1,150,537	+		LRK54_RS05345	0.78	+1.4
1,150,537	+		LRK54_RS05345	0.78	-1.3
1,150,537	+		LRK54_RS05345	0.78	+0.0
1,150,537	+		LRK54_RS05345	0.78	-0.2
1,150,537	+		LRK54_RS05345	0.78	-1.4
1,150,537	+		LRK54_RS05345	0.78	+0.3
1,150,537	+				+2.8
1,150,537	+		LRK54_RS05345	0.78	+0.8
1,150,537	+		LRK54_RS05345	0.78	+0.3
1,150,537	+		LRK54_RS05345	0.78	-0.2
1,150,537	+		LRK54_RS05345	0.78	-0.5
1,150,537	+		LRK54_RS05345	0.78	-0.4
1,150,537	+		LRK54_RS05345	0.78	-1.0
1,150,538	-		LRK54_RS05345	0.78	-1.1
1,150,538	-		LRK54_RS05345	0.78	+0.7
1,150,538	-		LRK54_RS05345	0.78	-2.2
1,150,538	-		LRK54_RS05345	0.78	-0.7
1,150,538	-		LRK54_RS05345	0.78	+0.8
1,150,538	-		LRK54_RS05345	0.78	+0.1
1,150,538	-		LRK54_RS05345	0.78	+0.7
1,150,538	-		LRK54_RS05345	0.78	+1.3
1,150,538	-		LRK54_RS05345	0.78	-0.0
1,150,538	-		LRK54_RS05345	0.78	-1.1
1,150,538	-		LRK54_RS05345	0.78	-1.6
1,150,538	-		LRK54_RS05345	0.78	-0.2
1,150,538	-		LRK54_RS05345	0.78	-0.4
1,150,538	-		LRK54_RS05345	0.78	+0.8
1,150,538	-		LRK54_RS05345	0.78	+1.3
1,150,538	-		LRK54_RS05345	0.78	-1.9
1,150,538	-		LRK54_RS05345	0.78	+0.8
1,150,538	-		LRK54_RS05345	0.78	-1.8
1,150,538	-		LRK54_RS05345	0.78	+0.5
1,150,538	-		LRK54_RS05345	0.78	-1.5
1,150,538	-		LRK54_RS05345	0.78	-0.2
1,150,538	-		LRK54_RS05345	0.78	+1.8
1,150,538	-		LRK54_RS05345	0.78	-1.4
1,150,543	+		LRK54_RS05345	0.79	-0.4
1,150,543	+		LRK54_RS05345	0.79	-0.7
1,150,543	+		LRK54_RS05345	0.79	-1.6
1,150,543	+		LRK54_RS05345	0.79	-2.5
1,150,543	+		LRK54_RS05345	0.79	-1.8
1,150,543	+		LRK54_RS05345	0.79	+0.4
1,150,543	+		LRK54_RS05345	0.79	-1.1
1,150,543	+		LRK54_RS05345	0.79	-1.7
1,150,543	+		LRK54_RS05345	0.79	-0.1
1,150,543	+		LRK54_RS05345	0.79	+0.8
1,150,543	+		LRK54_RS05345	0.79	-0.9
1,150,543	+		LRK54_RS05345	0.79	-1.7
1,150,543	+		LRK54_RS05345	0.79	-0.2
1,150,544	-		LRK54_RS05345	0.79	-0.1
1,150,544	-		LRK54_RS05345	0.79	-1.4
1,150,544	-		LRK54_RS05345	0.79	+2.3
1,150,544	-		LRK54_RS05345	0.79	+0.7
1,150,544	-		LRK54_RS05345	0.79	+0.4
1,150,544	-		LRK54_RS05345	0.79	-0.8
1,150,544	-		LRK54_RS05345	0.79	-1.7
1,150,544	-		LRK54_RS05345	0.79	-2.0
1,150,544	-		LRK54_RS05345	0.79	-1.8
1,150,557	-		LRK54_RS05345	0.79	-0.4
1,150,579	+		LRK54_RS05345	0.80	-0.1
1,150,579	+		LRK54_RS05345	0.80	-0.6
1,150,579	+		LRK54_RS05345	0.80	+0.0
1,150,579	+		LRK54_RS05345	0.80	-1.7
1,150,579	+		LRK54_RS05345	0.80	+0.4
1,150,579	+		LRK54_RS05345	0.80	-2.0
1,150,579	+		LRK54_RS05345	0.80	-0.8
1,150,579	+		LRK54_RS05345	0.80	+0.4
1,150,579	+		LRK54_RS05345	0.80	-0.9
1,150,579	+		LRK54_RS05345	0.80	+1.8
1,150,579	+		LRK54_RS05345	0.80	+0.3
1,150,579	+		LRK54_RS05345	0.80	-0.7
1,150,579	+		LRK54_RS05345	0.80	-0.1
1,150,579	+		LRK54_RS05345	0.80	-0.8
1,150,579	+		LRK54_RS05345	0.80	-0.2
1,150,579	+		LRK54_RS05345	0.80	-0.7
1,150,579	+		LRK54_RS05345	0.80	+0.5
1,150,579	+		LRK54_RS05345	0.80	-0.4
1,150,579	+		LRK54_RS05345	0.80	+1.7
1,150,580	-		LRK54_RS05345	0.80	-0.2
1,150,580	-		LRK54_RS05345	0.80	+0.7
1,150,580	-		LRK54_RS05345	0.80	+0.5
1,150,580	-		LRK54_RS05345	0.80	-0.6
1,150,580	-		LRK54_RS05345	0.80	+0.9
1,150,580	-		LRK54_RS05345	0.80	-0.6
1,150,580	-		LRK54_RS05345	0.80	-0.4
1,150,580	-		LRK54_RS05345	0.80	-0.5
1,150,580	-		LRK54_RS05345	0.80	-0.4
1,150,580	-		LRK54_RS05345	0.80	-0.2
1,150,580	-		LRK54_RS05345	0.80	+0.3
1,150,580	-		LRK54_RS05345	0.80	-1.3
1,150,580	-		LRK54_RS05345	0.80	+0.4
1,150,580	-		LRK54_RS05345	0.80	-2.2
1,150,580	-		LRK54_RS05345	0.80	-0.7
1,150,580	-		LRK54_RS05345	0.80	+0.0
1,150,580	-		LRK54_RS05345	0.80	-1.7
1,150,580	-		LRK54_RS05345	0.80	+1.5
1,150,580	-		LRK54_RS05345	0.80	-1.2
1,150,846	+		LRK54_RS05345	0.89	-2.2
1,150,846	+		LRK54_RS05345	0.89	-2.0
1,150,846	+		LRK54_RS05345	0.89	-1.5
1,150,846	+		LRK54_RS05345	0.89	-0.7
1,150,846	+		LRK54_RS05345	0.89	-0.8
1,150,846	+		LRK54_RS05345	0.89	-0.7
1,150,846	+		LRK54_RS05345	0.89	+1.8
1,150,846	+		LRK54_RS05345	0.89	-1.0
1,150,846	+		LRK54_RS05345	0.89	+0.8
1,150,846	+		LRK54_RS05345	0.89	+3.8
1,150,846	+		LRK54_RS05345	0.89	+0.0
1,150,847	-		LRK54_RS05345	0.89	-2.2
1,150,847	-		LRK54_RS05345	0.89	-1.7
1,150,847	-		LRK54_RS05345	0.89	-1.6
1,150,847	-		LRK54_RS05345	0.89	+0.3
1,150,847	-		LRK54_RS05345	0.89	+0.1
1,150,847	-		LRK54_RS05345	0.89	+0.2
1,150,847	-		LRK54_RS05345	0.89	+0.1
1,150,847	-		LRK54_RS05345	0.89	+1.6
1,150,847	-		LRK54_RS05345	0.89	-0.4
1,150,847	-		LRK54_RS05345	0.89	+0.7
1,150,847	-		LRK54_RS05345	0.89	+0.1
1,150,847	-		LRK54_RS05345	0.89	-0.5
1,150,847	-		LRK54_RS05345	0.89	+1.3
1,150,847	-		LRK54_RS05345	0.89	-0.2
1,150,849	+		LRK54_RS05345	0.89	-1.1
1,150,849	+		LRK54_RS05345	0.89	-0.9
1,150,849	+		LRK54_RS05345	0.89	-0.2
1,150,849	+		LRK54_RS05345	0.89	+0.5
1,150,849	+		LRK54_RS05345	0.89	+0.9
1,150,849	+		LRK54_RS05345	0.89	-1.9
1,150,849	+		LRK54_RS05345	0.89	+0.0
1,150,849	+		LRK54_RS05345	0.89	-1.9
1,150,849	+		LRK54_RS05345	0.89	+1.1
1,150,849	+		LRK54_RS05345	0.89	+2.0
1,150,849	+		LRK54_RS05345	0.89	+2.5
1,150,849	+		LRK54_RS05345	0.89	-0.2
1,150,849	+		LRK54_RS05345	0.89	-2.0
1,150,849	+		LRK54_RS05345	0.89	+0.9
1,150,849	+		LRK54_RS05345	0.89	-0.6
1,150,849	+		LRK54_RS05345	0.89	-1.6
1,150,849	+		LRK54_RS05345	0.89	-0.2
1,150,850	-		LRK54_RS05345	0.89	+2.0
1,150,850	-		LRK54_RS05345	0.89	+0.3
1,150,850	-		LRK54_RS05345	0.89	+0.8
1,150,850	-		LRK54_RS05345	0.89	+0.4
1,150,850	-		LRK54_RS05345	0.89	-2.2
1,150,850	-		LRK54_RS05345	0.89	-0.7
1,150,850	-		LRK54_RS05345	0.89	-0.5
1,150,850	-		LRK54_RS05345	0.89	-1.8
1,150,850	-		LRK54_RS05345	0.89	-0.2
1,150,858	+		LRK54_RS05345	0.89	+0.5
1,150,858	+		LRK54_RS05345	0.89	+0.3
1,150,858	+		LRK54_RS05345	0.89	-1.6
1,150,858	+		LRK54_RS05345	0.89	-1.9
1,150,858	+		LRK54_RS05345	0.89	-0.8
1,150,858	+		LRK54_RS05345	0.89	+0.1
1,150,858	+		LRK54_RS05345	0.89	+0.1
1,150,859	-		LRK54_RS05345	0.89	+0.3
1,150,859	-		LRK54_RS05345	0.89	-0.4
1,150,859	-		LRK54_RS05345	0.89	-1.5
1,150,859	-		LRK54_RS05345	0.89	+0.8
1,150,859	-		LRK54_RS05345	0.89	+3.8
1,150,888	+				-1.1
1,150,939	+				-0.2
1,150,939	+				-2.9
1,150,939	+				+3.8
1,150,939	+				+1.2
1,150,939	+				+0.4
1,150,940	-				-1.1
1,150,940	-				-0.5
1,150,940	-				-1.9
1,150,984	+				-0.5
1,150,985	-				-0.8
1,151,099	+				-1.5
1,151,099	+				+0.4
1,151,099	+				-0.5
1,151,099	+				+0.3
1,151,099	+				-0.7
1,151,099	+				-1.4
1,151,100	-				-0.1
1,151,100	-				+0.7
1,151,100	-				-1.8
1,151,100	-				+0.8
1,151,100	-				-0.7
1,151,100	-				+1.3
1,151,100	-				-0.4
1,151,116	+				+1.9
1,151,116	+				+1.1
1,151,116	+				+0.7
1,151,116	+				-0.8
1,151,117	-				-0.2
1,151,117	-				-0.6
1,151,155	+				-0.6
1,151,155	+				+0.4
1,151,155	+				-2.8
1,151,155	+				-1.4
1,151,155	+				-0.4
1,151,155	+				-0.4
1,151,155	+				-1.1
1,151,155	+				-0.3
1,151,155	+				+0.9
1,151,155	+				-0.5
1,151,155	+				+0.7
1,151,155	+				-0.8
1,151,155	+				-1.2
1,151,155	+				-2.1
1,151,155	+				-3.5
1,151,155	+				-0.5
1,151,156	-				+0.2
1,151,156	-				-1.7
1,151,156	-				-1.5
1,151,156	-				-0.9
1,151,156	-				-1.1
1,151,156	-				+1.3
1,151,156	-				+1.3
1,151,156	-				-0.9
1,151,156	-				-0.2
1,151,156	-				+0.1
1,151,156	-				+3.6
1,151,156	-				-0.7
1,151,156	-				-0.2
1,151,164	+				-0.6
1,151,164	+				+1.4
1,151,164	+				+0.0
1,151,164	+				+0.7
1,151,164	+				-1.2
1,151,164	+				+0.6
1,151,164	+				+2.8
1,151,164	+				+2.0
1,151,164	+				-0.8
1,151,165	-				+2.2
1,151,165	-				+0.8
1,151,165	-				-0.4
1,151,253	+				-0.8
1,151,253	+				-0.3
1,151,253	+				-1.9
1,151,254	-				-1.3
1,151,254	-				-1.4
1,151,254	-				+0.1
1,151,254	-				-2.0
1,151,610	+		LRK54_RS05350	0.66	+0.3
1,151,610	+		LRK54_RS05350	0.66	-2.9
1,151,610	+		LRK54_RS05350	0.66	-0.7
1,151,611	-		LRK54_RS05350	0.66	-0.1
1,151,611	-		LRK54_RS05350	0.66	-2.8
1,151,611	-		LRK54_RS05350	0.66	-2.1
1,151,611	-		LRK54_RS05350	0.66	-1.8
1,151,611	-		LRK54_RS05350	0.66	-1.9
1,151,959	+				-1.6
1,151,959	+				+0.4
1,151,959	+				+0.8
1,151,959	+				-0.1
1,151,959	+				-0.3
1,151,960	-				-1.1
1,151,960	-				+1.5
1,151,960	-				-1.0
1,151,960	-				+3.0
1,152,013	+				-0.3
1,152,014	-				-2.1
1,152,072	+				+0.3
1,152,072	+				-0.9
1,152,072	+				-1.7
1,152,073	-				+0.3
1,152,073	-				-1.1
1,152,073	-				+0.7
1,152,073	-				-1.2
1,152,111	+				+0.0
1,152,111	+				-1.5
1,152,111	+				+2.0
1,152,111	+				+0.8
1,152,111	+				-0.8
1,152,111	+				-0.7
1,152,111	+				-1.4
1,152,111	+				+0.5
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1,152,111	+				-2.0
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1,152,111	+				-0.0
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1,152,111	+				+0.0
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1,152,111	+				+0.7
1,152,111	+				-2.4
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1,152,292	+		LRK54_RS05355	0.13	+3.8
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1,152,292	+		LRK54_RS05355	0.13	+0.3
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1,152,293	-		LRK54_RS05355	0.13	+3.3
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1,152,769	+		LRK54_RS05355	0.47	+0.2
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1,152,769	+		LRK54_RS05355	0.47	-1.0
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1,152,769	+		LRK54_RS05355	0.47	-2.0
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1,152,770	-		LRK54_RS05355	0.47	-0.2
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1,152,770	-		LRK54_RS05355	0.47	-0.1
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1,152,770	-		LRK54_RS05355	0.47	+2.0
1,152,770	-		LRK54_RS05355	0.47	+2.2
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1,152,770	-		LRK54_RS05355	0.47	+1.1
1,152,770	-		LRK54_RS05355	0.47	+0.6
1,152,770	-		LRK54_RS05355	0.47	-0.2
1,152,770	-		LRK54_RS05355	0.47	+2.8
1,152,770	-		LRK54_RS05355	0.47	-0.1
1,152,770	-		LRK54_RS05355	0.47	-1.9