Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02850 and LRK54_RS02855 are separated by 6 nucleotides LRK54_RS02855 and LRK54_RS02860 are separated by 764 nucleotides
LRK54_RS02850: LRK54_RS02850 - AAA family ATPase, at 609,841 to 611,001
_RS02850
LRK54_RS02855: LRK54_RS02855 - type I restriction-modification system subunit M, at 611,008 to 612,627
_RS02855
LRK54_RS02860: LRK54_RS02860 - type II toxin-antitoxin system HicB family antitoxin, at 613,392 to 613,811
_RS02860
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 610.063 kb on + strand, within LRK54_RS02850 at 610.063 kb on + strand, within LRK54_RS02850 at 610.064 kb on - strand, within LRK54_RS02850 at 610.064 kb on - strand, within LRK54_RS02850 at 610.064 kb on - strand, within LRK54_RS02850 at 610.169 kb on + strand, within LRK54_RS02850 at 610.216 kb on + strand, within LRK54_RS02850 at 610.217 kb on - strand, within LRK54_RS02850 at 610.217 kb on - strand, within LRK54_RS02850 at 610.217 kb on - strand, within LRK54_RS02850 at 610.217 kb on - strand, within LRK54_RS02850 at 610.217 kb on - strand, within LRK54_RS02850 at 610.304 kb on - strand, within LRK54_RS02850 at 610.304 kb on - strand, within LRK54_RS02850 at 610.394 kb on + strand, within LRK54_RS02850 at 610.395 kb on - strand, within LRK54_RS02850 at 610.414 kb on + strand, within LRK54_RS02850 at 610.414 kb on + strand, within LRK54_RS02850 at 610.414 kb on + strand, within LRK54_RS02850 at 610.414 kb on + strand, within LRK54_RS02850 at 610.414 kb on + strand, within LRK54_RS02850 at 610.414 kb on + strand, within LRK54_RS02850 at 610.414 kb on + strand, within LRK54_RS02850 at 610.414 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.429 kb on + strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.430 kb on - strand, within LRK54_RS02850 at 610.435 kb on + strand, within LRK54_RS02850 at 610.435 kb on + strand, within LRK54_RS02850 at 610.435 kb on + strand, within LRK54_RS02850 at 610.435 kb on + strand, within LRK54_RS02850 at 610.435 kb on + strand, within LRK54_RS02850 at 610.435 kb on + strand, within LRK54_RS02850 at 610.435 kb on + strand, within LRK54_RS02850 at 610.436 kb on - strand, within LRK54_RS02850 at 610.436 kb on - strand, within LRK54_RS02850 at 610.530 kb on - strand, within LRK54_RS02850 at 610.530 kb on - strand, within LRK54_RS02850 at 610.530 kb on - strand, within LRK54_RS02850 at 610.530 kb on - strand, within LRK54_RS02850 at 610.530 kb on - strand, within LRK54_RS02850 at 610.603 kb on + strand, within LRK54_RS02850 at 610.672 kb on + strand, within LRK54_RS02850 at 610.672 kb on + strand, within LRK54_RS02850 at 610.673 kb on - strand, within LRK54_RS02850 at 610.673 kb on - strand, within LRK54_RS02850 at 610.673 kb on - strand, within LRK54_RS02850 at 610.673 kb on - strand, within LRK54_RS02850 at 610.726 kb on + strand, within LRK54_RS02850 at 610.726 kb on + strand, within LRK54_RS02850 at 610.726 kb on + strand, within LRK54_RS02850 at 610.726 kb on + strand, within LRK54_RS02850 at 610.726 kb on + strand, within LRK54_RS02850 at 610.727 kb on - strand, within LRK54_RS02850 at 610.727 kb on - strand, within LRK54_RS02850 at 610.727 kb on - strand, within LRK54_RS02850 at 610.727 kb on - strand, within LRK54_RS02850 at 610.727 kb on - strand, within LRK54_RS02850 at 610.728 kb on + strand, within LRK54_RS02850 at 610.728 kb on + strand, within LRK54_RS02850 at 610.843 kb on + strand, within LRK54_RS02850 at 610.880 kb on - strand, within LRK54_RS02850 at 610.880 kb on - strand, within LRK54_RS02850 at 610.888 kb on + strand at 610.888 kb on + strand at 610.888 kb on + strand at 610.889 kb on - strand at 610.889 kb on - strand at 610.999 kb on + strand at 610.999 kb on + strand at 610.999 kb on + strand at 610.999 kb on + strand at 610.999 kb on + strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.000 kb on - strand at 611.102 kb on - strand at 611.117 kb on + strand at 611.117 kb on + strand at 611.118 kb on - strand at 611.129 kb on - strand at 611.143 kb on + strand at 611.143 kb on + strand at 611.143 kb on + strand at 611.144 kb on - strand at 611.144 kb on - strand at 611.144 kb on - strand at 611.293 kb on + strand, within LRK54_RS02855 at 611.294 kb on - strand, within LRK54_RS02855 at 611.294 kb on - strand, within LRK54_RS02855 at 611.294 kb on - strand, within LRK54_RS02855 at 611.294 kb on - strand, within LRK54_RS02855 at 611.294 kb on - strand, within LRK54_RS02855 at 611.294 kb on - strand, within LRK54_RS02855 at 611.311 kb on + strand, within LRK54_RS02855 at 611.311 kb on + strand, within LRK54_RS02855 at 611.311 kb on + strand, within LRK54_RS02855 at 611.390 kb on - strand, within LRK54_RS02855 at 611.390 kb on - strand, within LRK54_RS02855 at 611.390 kb on - strand, within LRK54_RS02855 at 611.474 kb on - strand, within LRK54_RS02855 at 611.570 kb on - strand, within LRK54_RS02855 at 611.570 kb on - strand, within LRK54_RS02855 at 611.570 kb on - strand, within LRK54_RS02855 at 611.575 kb on + strand, within LRK54_RS02855 at 611.576 kb on - strand, within LRK54_RS02855 at 611.626 kb on + strand, within LRK54_RS02855 at 611.626 kb on + strand, within LRK54_RS02855 at 611.627 kb on - strand, within LRK54_RS02855 at 611.750 kb on + strand, within LRK54_RS02855 at 611.806 kb on + strand, within LRK54_RS02855 at 611.807 kb on - strand, within LRK54_RS02855 at 611.833 kb on + strand, within LRK54_RS02855 at 611.833 kb on + strand, within LRK54_RS02855 at 611.833 kb on + strand, within LRK54_RS02855 at 611.833 kb on + strand, within LRK54_RS02855 at 611.833 kb on + strand, within LRK54_RS02855 at 611.834 kb on - strand, within LRK54_RS02855 at 611.834 kb on - strand, within LRK54_RS02855 at 611.834 kb on - strand, within LRK54_RS02855 at 611.834 kb on - strand, within LRK54_RS02855 at 611.834 kb on - strand, within LRK54_RS02855 at 611.834 kb on - strand, within LRK54_RS02855 at 611.835 kb on + strand, within LRK54_RS02855 at 611.853 kb on + strand, within LRK54_RS02855 at 611.853 kb on + strand, within LRK54_RS02855 at 611.853 kb on + strand, within LRK54_RS02855 at 611.853 kb on + strand, within LRK54_RS02855 at 611.854 kb on - strand, within LRK54_RS02855 at 611.854 kb on - strand, within LRK54_RS02855 at 611.995 kb on + strand, within LRK54_RS02855 at 611.996 kb on - strand, within LRK54_RS02855 at 612.103 kb on + strand, within LRK54_RS02855 at 612.103 kb on + strand, within LRK54_RS02855 at 612.103 kb on + strand, within LRK54_RS02855 at 612.104 kb on - strand, within LRK54_RS02855 at 612.104 kb on - strand, within LRK54_RS02855 at 612.104 kb on - strand, within LRK54_RS02855 at 612.207 kb on + strand, within LRK54_RS02855 at 612.207 kb on + strand, within LRK54_RS02855 at 612.208 kb on - strand, within LRK54_RS02855 at 612.244 kb on + strand, within LRK54_RS02855 at 612.394 kb on + strand, within LRK54_RS02855 at 612.394 kb on + strand, within LRK54_RS02855 at 612.395 kb on - strand, within LRK54_RS02855 at 612.395 kb on - strand, within LRK54_RS02855 at 612.395 kb on - strand, within LRK54_RS02855 at 612.463 kb on + strand, within LRK54_RS02855 at 612.463 kb on + strand, within LRK54_RS02855 at 612.464 kb on - strand, within LRK54_RS02855 at 612.484 kb on + strand at 612.485 kb on - strand at 612.521 kb on + strand at 612.521 kb on + strand at 612.521 kb on + strand at 612.522 kb on - strand at 612.522 kb on - strand at 612.522 kb on - strand at 612.756 kb on + strand at 612.757 kb on - strand at 612.757 kb on - strand at 612.757 kb on - strand at 612.757 kb on - strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.086 kb on - strand at 613.086 kb on - strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.393 kb on + strand at 613.393 kb on + strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.567 kb on + strand, within LRK54_RS02860
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 610,063 + LRK54_RS02850 0.19 +1.2 610,063 + LRK54_RS02850 0.19 -1.4 610,064 - LRK54_RS02850 0.19 -1.8 610,064 - LRK54_RS02850 0.19 +0.3 610,064 - LRK54_RS02850 0.19 -0.1 610,169 + LRK54_RS02850 0.28 -0.8 610,216 + LRK54_RS02850 0.32 -0.9 610,217 - LRK54_RS02850 0.32 -0.6 610,217 - LRK54_RS02850 0.32 +2.2 610,217 - LRK54_RS02850 0.32 +1.5 610,217 - LRK54_RS02850 0.32 +0.8 610,217 - LRK54_RS02850 0.32 +1.1 610,304 - LRK54_RS02850 0.40 -0.7 610,304 - LRK54_RS02850 0.40 -1.5 610,394 + LRK54_RS02850 0.48 -1.1 610,395 - LRK54_RS02850 0.48 +0.1 610,414 + LRK54_RS02850 0.49 -1.3 610,414 + LRK54_RS02850 0.49 +0.3 610,414 + LRK54_RS02850 0.49 -1.7 610,414 + LRK54_RS02850 0.49 -0.1 610,414 + LRK54_RS02850 0.49 -1.2 610,414 + LRK54_RS02850 0.49 -0.3 610,414 + LRK54_RS02850 0.49 -1.9 610,414 + LRK54_RS02850 0.49 -1.4 610,429 + LRK54_RS02850 0.51 +1.2 610,429 + LRK54_RS02850 0.51 -0.3 610,429 + LRK54_RS02850 0.51 +0.4 610,429 + LRK54_RS02850 0.51 -2.3 610,429 + LRK54_RS02850 0.51 +0.1 610,429 + LRK54_RS02850 0.51 +2.1 610,429 + LRK54_RS02850 0.51 +3.8 610,429 + LRK54_RS02850 0.51 +0.5 610,429 + LRK54_RS02850 0.51 -0.7 610,429 + LRK54_RS02850 0.51 -0.5 610,429 + LRK54_RS02850 0.51 +0.1 610,429 + LRK54_RS02850 0.51 +0.3 610,429 + LRK54_RS02850 0.51 -0.9 610,429 + LRK54_RS02850 0.51 +0.0 610,429 + LRK54_RS02850 0.51 -0.6 610,430 - LRK54_RS02850 0.51 +1.0 610,430 - LRK54_RS02850 0.51 +0.1 610,430 - LRK54_RS02850 0.51 -0.3 610,430 - LRK54_RS02850 0.51 -0.1 610,430 - LRK54_RS02850 0.51 -0.3 610,430 - LRK54_RS02850 0.51 -0.3 610,430 - LRK54_RS02850 0.51 -0.5 610,430 - LRK54_RS02850 0.51 +0.4 610,430 - LRK54_RS02850 0.51 -1.6 610,430 - LRK54_RS02850 0.51 -2.0 610,430 - LRK54_RS02850 0.51 -0.6 610,430 - LRK54_RS02850 0.51 -0.4 610,435 + LRK54_RS02850 0.51 -0.4 610,435 + LRK54_RS02850 0.51 -0.8 610,435 + LRK54_RS02850 0.51 -2.0 610,435 + LRK54_RS02850 0.51 +0.8 610,435 + LRK54_RS02850 0.51 -0.6 610,435 + LRK54_RS02850 0.51 -1.5 610,435 + LRK54_RS02850 0.51 -1.3 610,436 - LRK54_RS02850 0.51 -0.6 610,436 - LRK54_RS02850 0.51 +1.0 610,530 - LRK54_RS02850 0.59 +3.2 610,530 - LRK54_RS02850 0.59 +0.5 610,530 - LRK54_RS02850 0.59 +0.5 610,530 - LRK54_RS02850 0.59 +0.4 610,530 - LRK54_RS02850 0.59 +3.8 610,603 + LRK54_RS02850 0.66 +0.0 610,672 + LRK54_RS02850 0.72 +0.0 610,672 + LRK54_RS02850 0.72 -0.2 610,673 - LRK54_RS02850 0.72 -0.8 610,673 - LRK54_RS02850 0.72 -0.9 610,673 - LRK54_RS02850 0.72 +1.0 610,673 - LRK54_RS02850 0.72 -1.1 610,726 + LRK54_RS02850 0.76 -1.7 610,726 + LRK54_RS02850 0.76 +2.2 610,726 + LRK54_RS02850 0.76 -0.5 610,726 + LRK54_RS02850 0.76 +1.4 610,726 + LRK54_RS02850 0.76 -0.8 610,727 - LRK54_RS02850 0.76 +0.1 610,727 - LRK54_RS02850 0.76 -0.5 610,727 - LRK54_RS02850 0.76 -0.5 610,727 - LRK54_RS02850 0.76 -2.4 610,727 - LRK54_RS02850 0.76 +2.3 610,728 + LRK54_RS02850 0.76 -0.0 610,728 + LRK54_RS02850 0.76 +4.1 610,843 + LRK54_RS02850 0.86 +0.6 610,880 - LRK54_RS02850 0.89 -0.1 610,880 - LRK54_RS02850 0.89 +0.2 610,888 + +2.8 610,888 + +1.2 610,888 + -2.6 610,889 - -1.7 610,889 - +1.1 610,999 + -0.5 610,999 + -0.9 610,999 + -0.3 610,999 + -0.4 610,999 + +0.3 611,000 - -0.7 611,000 - +0.8 611,000 - -0.3 611,000 - +2.1 611,000 - +0.5 611,000 - +2.4 611,102 - +1.4 611,117 + +1.2 611,117 + +0.1 611,118 - +0.5 611,129 - -0.3 611,143 + +0.6 611,143 + -0.2 611,143 + +1.4 611,144 - +0.2 611,144 - +0.4 611,144 - +0.8 611,293 + LRK54_RS02855 0.18 -0.4 611,294 - LRK54_RS02855 0.18 +0.5 611,294 - LRK54_RS02855 0.18 +0.6 611,294 - LRK54_RS02855 0.18 -0.8 611,294 - LRK54_RS02855 0.18 +1.0 611,294 - LRK54_RS02855 0.18 -1.4 611,294 - LRK54_RS02855 0.18 +1.5 611,311 + LRK54_RS02855 0.19 +0.1 611,311 + LRK54_RS02855 0.19 +1.1 611,311 + LRK54_RS02855 0.19 +0.1 611,390 - LRK54_RS02855 0.24 +0.1 611,390 - LRK54_RS02855 0.24 -2.0 611,390 - LRK54_RS02855 0.24 +0.1 611,474 - LRK54_RS02855 0.29 +0.5 611,570 - LRK54_RS02855 0.35 +0.5 611,570 - LRK54_RS02855 0.35 +0.5 611,570 - LRK54_RS02855 0.35 +1.8 611,575 + LRK54_RS02855 0.35 +1.0 611,576 - LRK54_RS02855 0.35 -0.4 611,626 + LRK54_RS02855 0.38 -0.6 611,626 + LRK54_RS02855 0.38 +0.0 611,627 - LRK54_RS02855 0.38 -1.4 611,750 + LRK54_RS02855 0.46 +1.1 611,806 + LRK54_RS02855 0.49 +2.4 611,807 - LRK54_RS02855 0.49 +0.4 611,833 + LRK54_RS02855 0.51 +0.8 611,833 + LRK54_RS02855 0.51 -0.6 611,833 + LRK54_RS02855 0.51 +0.8 611,833 + LRK54_RS02855 0.51 -0.3 611,833 + LRK54_RS02855 0.51 +0.0 611,834 - LRK54_RS02855 0.51 +0.5 611,834 - LRK54_RS02855 0.51 +0.5 611,834 - LRK54_RS02855 0.51 +1.0 611,834 - LRK54_RS02855 0.51 -0.3 611,834 - LRK54_RS02855 0.51 -0.6 611,834 - LRK54_RS02855 0.51 +2.0 611,835 + LRK54_RS02855 0.51 -0.4 611,853 + LRK54_RS02855 0.52 +0.0 611,853 + LRK54_RS02855 0.52 +0.0 611,853 + LRK54_RS02855 0.52 +0.1 611,853 + LRK54_RS02855 0.52 -0.9 611,854 - LRK54_RS02855 0.52 +0.1 611,854 - LRK54_RS02855 0.52 -0.3 611,995 + LRK54_RS02855 0.61 +1.5 611,996 - LRK54_RS02855 0.61 +1.5 612,103 + LRK54_RS02855 0.68 -0.9 612,103 + LRK54_RS02855 0.68 +1.0 612,103 + LRK54_RS02855 0.68 +0.1 612,104 - LRK54_RS02855 0.68 +0.2 612,104 - LRK54_RS02855 0.68 +0.0 612,104 - LRK54_RS02855 0.68 +0.2 612,207 + LRK54_RS02855 0.74 +1.2 612,207 + LRK54_RS02855 0.74 +0.4 612,208 - LRK54_RS02855 0.74 -1.6 612,244 + LRK54_RS02855 0.76 +1.6 612,394 + LRK54_RS02855 0.86 +0.4 612,394 + LRK54_RS02855 0.86 +1.8 612,395 - LRK54_RS02855 0.86 +0.5 612,395 - LRK54_RS02855 0.86 +1.2 612,395 - LRK54_RS02855 0.86 -0.8 612,463 + LRK54_RS02855 0.90 +0.8 612,463 + LRK54_RS02855 0.90 +3.4 612,464 - LRK54_RS02855 0.90 -0.4 612,484 + -0.3 612,485 - +0.5 612,521 + -0.6 612,521 + +1.5 612,521 + -0.5 612,522 - -0.6 612,522 - -1.3 612,522 - +2.2 612,756 + -0.8 612,757 - +0.2 612,757 - -0.1 612,757 - -0.8 612,757 - -1.2 613,074 + +4.4 613,074 + -2.0 613,074 + -0.9 613,074 + +0.4 613,074 + +0.4 613,074 + +0.5 613,074 + -0.2 613,074 + +0.2 613,074 + -1.1 613,075 - +2.8 613,075 - -1.2 613,075 - -1.2 613,075 - -1.0 613,075 - +1.1 613,075 - +1.0 613,075 - +0.4 613,075 - +1.4 613,075 - +0.2 613,086 - +0.2 613,086 - +0.5 613,173 + +0.6 613,173 + +1.5 613,173 + +1.8 613,173 + -0.1 613,173 + -1.1 613,174 - -1.5 613,174 - -0.1 613,174 - -0.4 613,174 - +0.2 613,174 - +1.8 613,174 - +1.0 613,323 + +1.0 613,323 + +0.9 613,323 + +1.5 613,323 + -0.4 613,323 + -1.0 613,323 + +0.1 613,323 + -0.5 613,323 + -1.9 613,323 + -0.4 613,323 + +0.1 613,323 + +1.8 613,323 + -0.8 613,323 + -0.7 613,324 - -0.1 613,324 - -0.5 613,324 - +3.0 613,324 - -0.2 613,324 - -0.4 613,324 - -0.2 613,324 - -1.0 613,324 - -0.9 613,324 - -0.2 613,324 - +0.2 613,324 - +3.1 613,324 - -0.6 613,393 + -1.8 613,393 + -2.0 613,394 - -1.1 613,394 - -2.2 613,394 - -1.3 613,394 - +0.1 613,567 + LRK54_RS02860 0.42 -1.5
Or see this region's nucleotide sequence