Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00025

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
2,874	+		LRK54_RS00015	0.76	+1.0
3,016	+				-0.9
3,016	+				+0.8
3,016	+				-0.5
3,017	-				-0.0
3,017	-				-0.2
3,017	-				-2.2
3,017	-				-1.5
3,017	-				+0.2
3,017	-				-1.5
3,020	+				-0.1
3,020	+				+1.0
3,020	+				+0.8
3,020	+				+0.2
3,020	+				+0.5
3,020	+				-1.0
3,020	+				-0.8
3,020	+				+2.1
3,020	+				+0.1
3,020	+				+2.0
3,020	+				-0.2
3,020	+				-0.3
3,020	+				-0.4
3,020	+				-0.4
3,020	+				-0.5
3,020	+				-0.9
3,020	+				-1.5
3,020	+				+0.6
3,020	+				-1.0
3,020	+				+2.1
3,020	+				+0.7
3,021	-				+0.6
3,021	-				+2.0
3,021	-				-0.8
3,021	-				+0.7
3,021	-				-1.3
3,021	-				-0.0
3,021	-				-1.4
3,021	-				-1.0
3,021	-				-1.4
3,021	-				-0.5
3,021	-				-0.3
3,021	-				-1.6
3,021	-				-2.1
3,021	-				-2.6
3,021	-				-0.2
3,021	-				+1.3
3,021	-				+0.6
3,021	-				+0.2
3,021	-				+2.2
3,021	-				+2.8
3,021	-				-1.0
3,021	-				-0.5
3,021	-				+1.1
3,021	-				-0.3
3,023	+				+1.5
3,023	+				-0.3
3,023	+				+1.1
3,023	+				+0.1
3,023	+				+0.1
3,023	+				+0.1
3,023	+				-1.8
3,023	+				-2.0
3,023	+				+0.6
3,023	+				-1.0
3,023	+				-0.8
3,024	-				+0.5
3,024	-				-1.2
3,024	-				-1.6
3,024	-				+1.3
3,024	-				+0.0
3,024	-				+0.1
3,024	-				-0.3
3,026	+				-0.3
3,026	+				+0.4
3,026	+				-0.2
3,026	+				-0.4
3,026	+				-0.5
3,026	+				+0.4
3,026	+				+3.8
3,026	+				+0.8
3,026	+				-1.0
3,026	+				+0.5
3,026	+				-0.5
3,026	+				-0.3
3,026	+				+1.7
3,026	+				+1.3
3,026	+				-1.9
3,026	+				-0.4
3,026	+				-0.4
3,026	+				+2.2
3,027	-				-0.7
3,027	-				-0.3
3,027	-				+1.0
3,027	-				-2.9
3,027	-				+0.6
3,027	-				-1.0
3,027	-				+0.3
3,027	-				+1.5
3,027	-				-0.0
3,027	-				+0.3
3,027	-				-2.5
3,027	-				-1.6
3,027	-				-0.3
3,027	-				+3.2
3,027	-				+1.0
3,027	-				-1.1
3,027	-				+0.9
3,051	-				+0.2
3,051	-				+2.0
3,051	-				-0.7
3,051	-				-1.1
3,097	+				+0.9
3,097	+				-0.6
3,097	+				+0.5
3,097	+				+2.8
3,097	+				+0.8
3,097	+				-1.3
3,098	-				+2.3
3,098	-				-0.8
3,098	-				-0.3
3,098	-				+0.9
3,098	-				-0.7
3,156	+		LRK54_RS00020	0.13	-1.2
3,157	-		LRK54_RS00020	0.13	-1.1
3,157	-		LRK54_RS00020	0.13	+0.1
3,157	-		LRK54_RS00020	0.13	-1.5
3,157	-		LRK54_RS00020	0.13	+0.5
3,157	-		LRK54_RS00020	0.13	+0.8
3,165	+		LRK54_RS00020	0.15	+0.5
3,165	+		LRK54_RS00020	0.15	-3.2
3,165	+		LRK54_RS00020	0.15	-1.3
3,165	+		LRK54_RS00020	0.15	-1.5
3,165	+		LRK54_RS00020	0.15	+0.2
3,165	+		LRK54_RS00020	0.15	+2.2
3,165	+		LRK54_RS00020	0.15	-0.6
3,166	-		LRK54_RS00020	0.15	-0.3
3,166	-		LRK54_RS00020	0.15	-0.7
3,222	+		LRK54_RS00020	0.24	-0.1
3,222	+		LRK54_RS00020	0.24	+2.2
3,222	+		LRK54_RS00020	0.24	+1.4
3,223	-		LRK54_RS00020	0.25	-1.0
3,223	-		LRK54_RS00020	0.25	-1.0
3,223	-		LRK54_RS00020	0.25	+1.1
3,255	+		LRK54_RS00020	0.30	+0.4
3,255	+		LRK54_RS00020	0.30	+0.2
3,255	+		LRK54_RS00020	0.30	+0.3
3,255	+		LRK54_RS00020	0.30	+0.5
3,256	-		LRK54_RS00020	0.30	+3.0
3,256	-		LRK54_RS00020	0.30	-0.2
3,256	-		LRK54_RS00020	0.30	+0.3
3,256	-		LRK54_RS00020	0.30	+0.1
3,256	-		LRK54_RS00020	0.30	-0.3
3,282	+		LRK54_RS00020	0.35	-2.3
3,283	-		LRK54_RS00020	0.35	-0.7
3,283	-		LRK54_RS00020	0.35	+1.5
3,283	-		LRK54_RS00020	0.35	-2.6
3,326	+		LRK54_RS00020	0.42	-1.1
3,326	+		LRK54_RS00020	0.42	-0.0
3,326	+		LRK54_RS00020	0.42	+2.5
3,326	+		LRK54_RS00020	0.42	+0.5
3,327	-		LRK54_RS00020	0.42	+0.3
3,327	-		LRK54_RS00020	0.42	-1.0
3,327	-		LRK54_RS00020	0.42	+0.4
3,426	+		LRK54_RS00020	0.59	+0.3
3,426	+		LRK54_RS00020	0.59	+0.1
3,426	+		LRK54_RS00020	0.59	+0.6
3,426	+		LRK54_RS00020	0.59	-0.8
3,426	+		LRK54_RS00020	0.59	+0.8
3,426	+		LRK54_RS00020	0.59	-0.5
3,426	+		LRK54_RS00020	0.59	+2.2
3,426	+		LRK54_RS00020	0.59	+1.8
3,426	+		LRK54_RS00020	0.59	+1.2
3,426	+		LRK54_RS00020	0.59	+0.4
3,426	+		LRK54_RS00020	0.59	-0.2
3,426	+		LRK54_RS00020	0.59	-1.1
3,427	-		LRK54_RS00020	0.59	-0.7
3,427	-		LRK54_RS00020	0.59	+2.2
3,427	-		LRK54_RS00020	0.59	-3.3
3,427	-		LRK54_RS00020	0.59	-0.3
3,427	-		LRK54_RS00020	0.59	-1.6
3,427	-		LRK54_RS00020	0.59	-1.6
3,427	-		LRK54_RS00020	0.59	+0.4
3,427	-		LRK54_RS00020	0.59	-0.2
3,427	-		LRK54_RS00020	0.59	-2.3
3,432	+		LRK54_RS00020	0.60	+1.3
3,432	+		LRK54_RS00020	0.60	+1.0
3,432	+		LRK54_RS00020	0.60	+1.2
3,432	+		LRK54_RS00020	0.60	+0.5
3,432	+		LRK54_RS00020	0.60	-0.5
3,432	+		LRK54_RS00020	0.60	-0.5
3,432	+		LRK54_RS00020	0.60	+3.4
3,432	+		LRK54_RS00020	0.60	+0.8
3,432	+		LRK54_RS00020	0.60	+2.8
3,432	+		LRK54_RS00020	0.60	-0.3
3,432	+		LRK54_RS00020	0.60	-3.0
3,432	+		LRK54_RS00020	0.60	-0.2
3,432	+		LRK54_RS00020	0.60	-0.9
3,433	-		LRK54_RS00020	0.60	-1.0
3,433	-		LRK54_RS00020	0.60	-0.1
3,433	-		LRK54_RS00020	0.60	-0.7
3,433	-		LRK54_RS00020	0.60	+0.2
3,433	-		LRK54_RS00020	0.60	+1.0
3,433	-		LRK54_RS00020	0.60	-0.3
3,433	-		LRK54_RS00020	0.60	-0.6
3,433	-		LRK54_RS00020	0.60	-0.1
3,433	-		LRK54_RS00020	0.60	+2.8
3,433	-		LRK54_RS00020	0.60	+1.2
3,433	-		LRK54_RS00020	0.60	-0.9
3,433	-		LRK54_RS00020	0.60	-1.8
3,433	-		LRK54_RS00020	0.60	-1.0
3,471	+		LRK54_RS00020	0.66	-0.9
3,472	-		LRK54_RS00020	0.67	-0.2
3,472	-		LRK54_RS00020	0.67	-2.2
3,472	-		LRK54_RS00020	0.67	-0.4
3,505	+		LRK54_RS00020	0.72	+1.0
3,505	+		LRK54_RS00020	0.72	-2.2
3,505	+		LRK54_RS00020	0.72	+1.8
3,505	+		LRK54_RS00020	0.72	-2.1
3,505	+		LRK54_RS00020	0.72	-0.2
3,505	+		LRK54_RS00020	0.72	-0.5
3,505	+		LRK54_RS00020	0.72	-0.7
3,505	+		LRK54_RS00020	0.72	+1.0
3,505	+		LRK54_RS00020	0.72	+0.2
3,505	+		LRK54_RS00020	0.72	+0.6
3,505	+		LRK54_RS00020	0.72	+0.5
3,505	+		LRK54_RS00020	0.72	+0.6
3,505	+		LRK54_RS00020	0.72	+0.4
3,505	+		LRK54_RS00020	0.72	+0.4
3,505	+		LRK54_RS00020	0.72	-0.3
3,506	-		LRK54_RS00020	0.72	-1.4
3,506	-		LRK54_RS00020	0.72	-1.9
3,506	-		LRK54_RS00020	0.72	+0.8
3,506	-		LRK54_RS00020	0.72	-0.4
3,506	-		LRK54_RS00020	0.72	-1.5
3,506	-		LRK54_RS00020	0.72	-1.9
3,506	-		LRK54_RS00020	0.72	-1.4
3,506	-		LRK54_RS00020	0.72	-0.2
3,507	+		LRK54_RS00020	0.73	-0.7
3,508	-		LRK54_RS00020	0.73	+0.3
3,508	-		LRK54_RS00020	0.73	-2.2
3,508	-		LRK54_RS00020	0.73	-0.6
3,508	-		LRK54_RS00020	0.73	+1.6
3,508	-		LRK54_RS00020	0.73	-0.4
3,508	-		LRK54_RS00020	0.73	-0.9
3,524	+		LRK54_RS00020	0.75	-0.1
3,524	+		LRK54_RS00020	0.75	+0.5
3,525	-		LRK54_RS00020	0.76	+0.2
3,525	-		LRK54_RS00020	0.76	-2.9
3,667	-				+0.1
3,667	-				+1.8
3,667	-				-1.6
3,667	-				-0.8
3,667	-				+0.6
3,667	-				-2.5
3,681	+				+0.3
3,681	+				-0.2
3,681	+				-0.2
3,681	+				-1.2
3,681	+				-0.7
3,681	+				+0.1
3,681	+				+1.2
3,681	+				-0.3
3,681	+				-0.5
3,682	-				-0.4
3,682	-				-0.3
3,682	-				-1.3
3,682	-				+3.4
3,682	-				-0.8
3,682	-				+0.4
3,682	-				+3.0
3,682	-				+0.1
3,682	-				-0.6
3,682	-				-0.5
3,682	-				+0.1
3,682	-				-0.0
3,682	-				+1.0
3,691	+				+0.4
3,691	+				+0.4
3,691	+				+2.2
3,748	+				-0.7
3,748	+				+1.8
3,748	+				-1.2
3,748	+				+1.0
3,749	-				+0.7
3,749	-				-0.3
3,749	-				-0.0
3,749	-				-0.3
3,749	-				-1.1
3,749	-				-0.5
3,749	-				-1.2
3,775	+				-0.3
3,775	+				-2.2
3,775	+				+2.0
3,798	+				-1.0
3,798	+				-0.6
3,799	-				+0.3
3,799	-				+1.0
3,799	-				+0.2
3,799	-				+1.8
3,933	+		LRK54_RS00025	0.27	-2.0
3,933	+		LRK54_RS00025	0.27	-0.9
3,933	+		LRK54_RS00025	0.27	-1.0
3,933	+		LRK54_RS00025	0.27	-1.1
3,934	-		LRK54_RS00025	0.27	-0.5
3,934	-		LRK54_RS00025	0.27	-1.2
3,954	+		LRK54_RS00025	0.30	-0.5
3,954	+		LRK54_RS00025	0.30	-0.4
3,955	-		LRK54_RS00025	0.31	-1.1
4,022	+		LRK54_RS00025	0.43	-0.7
4,022	+		LRK54_RS00025	0.43	-0.4
4,022	+		LRK54_RS00025	0.43	-1.1
4,023	-		LRK54_RS00025	0.43	-1.6
4,023	-		LRK54_RS00025	0.43	-1.0
4,023	-		LRK54_RS00025	0.43	-1.7
4,028	+		LRK54_RS00025	0.44	-2.3
4,367	-				-0.8
4,462	+				+0.1
4,531	+				-0.7
4,531	+				-0.7
4,531	+				-0.7
4,532	-				-1.3
4,532	-				-0.7
4,532	-				-1.5
4,532	-				-1.2
4,532	-				+1.0
4,532	-				+1.3
4,532	-				-0.7
4,532	-				+1.2
4,532	-				-1.4
4,532	-				+0.5
4,532	-				-0.5
4,583	+				-0.1
4,584	-				-0.3
4,584	-				+0.1
4,584	-				-0.1
4,584	-				-1.1
4,584	-				+0.6
4,584	-				-1.9
4,710	+		LRK54_RS00030	0.16	+1.9
4,710	+		LRK54_RS00030	0.16	-1.8
4,710	+		LRK54_RS00030	0.16	-1.5
4,710	+		LRK54_RS00030	0.16	+0.1
4,710	+		LRK54_RS00030	0.16	+0.8
4,710	+		LRK54_RS00030	0.16	-0.2
4,710	+		LRK54_RS00030	0.16	-0.3
4,710	+		LRK54_RS00030	0.16	-0.1
4,710	+		LRK54_RS00030	0.16	-0.9
4,710	+		LRK54_RS00030	0.16	+0.8
4,710	+		LRK54_RS00030	0.16	-0.1
4,711	-		LRK54_RS00030	0.16	+0.1
4,711	-		LRK54_RS00030	0.16	+0.9
4,711	-		LRK54_RS00030	0.16	+0.2
4,711	-		LRK54_RS00030	0.16	-0.9
4,711	-		LRK54_RS00030	0.16	-2.1
4,711	-		LRK54_RS00030	0.16	-0.0
4,711	-		LRK54_RS00030	0.16	+0.5
4,711	-		LRK54_RS00030	0.16	-0.6
4,711	-		LRK54_RS00030	0.16	+0.5
4,711	-		LRK54_RS00030	0.16	-0.7
4,711	-		LRK54_RS00030	0.16	-0.0
4,711	-		LRK54_RS00030	0.16	-0.6
4,784	+		LRK54_RS00030	0.23	-0.2
4,784	+		LRK54_RS00030	0.23	-1.6
4,784	+		LRK54_RS00030	0.23	-1.3
4,784	+		LRK54_RS00030	0.23	-0.6
4,785	-		LRK54_RS00030	0.24	+0.3
4,785	-		LRK54_RS00030	0.24	-2.3
4,785	-		LRK54_RS00030	0.24	+0.0
4,785	-		LRK54_RS00030	0.24	+1.2
4,785	-		LRK54_RS00030	0.24	+0.5
4,785	-		LRK54_RS00030	0.24	-0.4
4,796	+		LRK54_RS00030	0.25	+2.0
4,796	+		LRK54_RS00030	0.25	-1.5
4,796	+		LRK54_RS00030	0.25	-0.7
4,796	+		LRK54_RS00030	0.25	-0.5
4,797	-		LRK54_RS00030	0.25	+0.6
4,797	-		LRK54_RS00030	0.25	+0.2
4,797	-		LRK54_RS00030	0.25	-1.0
4,797	-		LRK54_RS00030	0.25	-0.3
4,797	-		LRK54_RS00030	0.25	+0.3
4,853	-		LRK54_RS00030	0.30	-1.4
4,853	-		LRK54_RS00030	0.30	+0.5
4,853	-		LRK54_RS00030	0.30	+0.4
5,002	+		LRK54_RS00030	0.45	+0.7
5,003	-		LRK54_RS00030	0.46	-0.9
5,023	+		LRK54_RS00030	0.48	-1.5
5,023	+		LRK54_RS00030	0.48	+0.2
5,023	+		LRK54_RS00030	0.48	-0.5
5,023	+		LRK54_RS00030	0.48	+0.4
5,023	+		LRK54_RS00030	0.48	-1.8
5,024	-		LRK54_RS00030	0.48	+0.1
5,055	+		LRK54_RS00030	0.51	-0.6
5,055	+		LRK54_RS00030	0.51	-0.8
5,055	+		LRK54_RS00030	0.51	-0.1
5,056	-		LRK54_RS00030	0.51	-2.2
5,056	-		LRK54_RS00030	0.51	+0.1
5,056	-		LRK54_RS00030	0.51	-1.5
5,067	-		LRK54_RS00030	0.52	+2.2
5,067	-		LRK54_RS00030	0.52	-1.6
5,169	+		LRK54_RS00030	0.62	-1.2
5,169	+		LRK54_RS00030	0.62	-0.3
5,169	+		LRK54_RS00030	0.62	+0.3
5,169	+		LRK54_RS00030	0.62	+0.2
5,169	+		LRK54_RS00030	0.62	+0.4
5,169	+		LRK54_RS00030	0.62	+3.8
5,169	+		LRK54_RS00030	0.62	-2.0
5,169	+		LRK54_RS00030	0.62	+0.3
5,169	+		LRK54_RS00030	0.62	-1.9
5,170	-		LRK54_RS00030	0.63	-0.4
5,170	-		LRK54_RS00030	0.63	+1.5
5,170	-		LRK54_RS00030	0.63	-1.0
5,170	-		LRK54_RS00030	0.63	+0.8
5,170	-		LRK54_RS00030	0.63	-0.2
5,170	-		LRK54_RS00030	0.63	+1.0
5,170	-		LRK54_RS00030	0.63	+1.5
5,306	+		LRK54_RS00030	0.76	-0.7
5,306	+		LRK54_RS00030	0.76	-0.7
5,306	+		LRK54_RS00030	0.76	-1.5
5,306	+		LRK54_RS00030	0.76	-0.5
5,306	+		LRK54_RS00030	0.76	+0.4
5,306	+		LRK54_RS00030	0.76	+0.3
5,306	+		LRK54_RS00030	0.76	-0.5
5,306	+		LRK54_RS00030	0.76	+0.6
5,306	+		LRK54_RS00030	0.76	+1.0
5,307	-		LRK54_RS00030	0.76	-0.4
5,307	-		LRK54_RS00030	0.76	+1.3
5,307	-		LRK54_RS00030	0.76	-0.4
5,307	-		LRK54_RS00030	0.76	+1.8
5,307	-		LRK54_RS00030	0.76	-1.7
5,307	-		LRK54_RS00030	0.76	-1.4
5,307	-		LRK54_RS00030	0.76	+1.5
5,307	-		LRK54_RS00030	0.76	-1.1
5,307	-		LRK54_RS00030	0.76	-0.9