Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08060

Experiment: planktonic; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM;
1,765,037	+		LRK54_RS08055	0.70	+1.6
1,765,073	+		LRK54_RS08055	0.72	-0.1
1,765,073	+		LRK54_RS08055	0.72	+0.3
1,765,073	+		LRK54_RS08055	0.72	-0.9
1,765,074	-		LRK54_RS08055	0.72	-0.3
1,765,074	-		LRK54_RS08055	0.72	-0.2
1,765,074	-		LRK54_RS08055	0.72	-0.2
1,765,074	-		LRK54_RS08055	0.72	-0.0
1,765,214	+		LRK54_RS08055	0.77	-2.4
1,765,214	+		LRK54_RS08055	0.77	+0.7
1,765,214	+		LRK54_RS08055	0.77	-0.8
1,765,215	-		LRK54_RS08055	0.77	-0.9
1,765,215	-		LRK54_RS08055	0.77	+0.0
1,765,215	-		LRK54_RS08055	0.77	-0.7
1,765,215	-		LRK54_RS08055	0.77	-1.4
1,765,215	-		LRK54_RS08055	0.77	+0.4
1,765,271	+		LRK54_RS08055	0.79	-1.5
1,765,271	+		LRK54_RS08055	0.79	+1.4
1,765,271	+		LRK54_RS08055	0.79	-0.0
1,765,271	+		LRK54_RS08055	0.79	-2.1
1,765,271	+		LRK54_RS08055	0.79	-0.1
1,765,271	+		LRK54_RS08055	0.79	+0.2
1,765,271	+		LRK54_RS08055	0.79	-1.1
1,765,271	+		LRK54_RS08055	0.79	-1.5
1,765,271	+		LRK54_RS08055	0.79	-0.1
1,765,271	+		LRK54_RS08055	0.79	-0.7
1,765,271	+		LRK54_RS08055	0.79	+0.5
1,765,271	+		LRK54_RS08055	0.79	-0.2
1,765,271	+		LRK54_RS08055	0.79	-0.2
1,765,271	+		LRK54_RS08055	0.79	-0.1
1,765,271	+		LRK54_RS08055	0.79	-0.3
1,765,271	+		LRK54_RS08055	0.79	-0.8
1,765,271	+		LRK54_RS08055	0.79	-2.1
1,765,271	+		LRK54_RS08055	0.79	+0.4
1,765,271	+		LRK54_RS08055	0.79	+0.1
1,765,272	-		LRK54_RS08055	0.79	-0.5
1,765,272	-		LRK54_RS08055	0.79	-0.9
1,765,272	-		LRK54_RS08055	0.79	+0.9
1,765,272	-		LRK54_RS08055	0.79	+2.6
1,765,272	-		LRK54_RS08055	0.79	-0.2
1,765,272	-		LRK54_RS08055	0.79	+0.3
1,765,272	-		LRK54_RS08055	0.79	+0.2
1,765,272	-		LRK54_RS08055	0.79	-1.5
1,765,272	-		LRK54_RS08055	0.79	+1.2
1,765,272	-		LRK54_RS08055	0.79	+0.0
1,765,272	-		LRK54_RS08055	0.79	+0.6
1,765,272	-		LRK54_RS08055	0.79	-0.3
1,765,272	-		LRK54_RS08055	0.79	-1.1
1,765,272	-		LRK54_RS08055	0.79	-1.7
1,765,272	-		LRK54_RS08055	0.79	-1.1
1,765,272	-		LRK54_RS08055	0.79	+0.1
1,765,272	-		LRK54_RS08055	0.79	-0.6
1,765,272	-		LRK54_RS08055	0.79	-0.0
1,765,272	-		LRK54_RS08055	0.79	-1.8
1,765,272	-		LRK54_RS08055	0.79	-0.6
1,765,272	-		LRK54_RS08055	0.79	-0.4
1,765,345	+		LRK54_RS08055	0.82	+0.9
1,765,345	+		LRK54_RS08055	0.82	+0.7
1,765,345	+		LRK54_RS08055	0.82	+0.6
1,765,345	+		LRK54_RS08055	0.82	+1.6
1,765,345	+		LRK54_RS08055	0.82	+1.3
1,765,345	+		LRK54_RS08055	0.82	-0.9
1,765,345	+		LRK54_RS08055	0.82	-0.2
1,765,345	+		LRK54_RS08055	0.82	+0.4
1,765,376	+		LRK54_RS08055	0.83	+0.9
1,765,377	-		LRK54_RS08055	0.83	+0.9
1,765,460	+		LRK54_RS08055	0.86	+0.2
1,765,460	+		LRK54_RS08055	0.86	-1.9
1,765,460	+		LRK54_RS08055	0.86	+0.0
1,765,460	+		LRK54_RS08055	0.86	-0.2
1,765,460	+		LRK54_RS08055	0.86	-2.1
1,765,460	+		LRK54_RS08055	0.86	+0.9
1,765,460	+		LRK54_RS08055	0.86	-0.2
1,765,460	+		LRK54_RS08055	0.86	-0.4
1,765,460	+		LRK54_RS08055	0.86	-0.1
1,765,460	+		LRK54_RS08055	0.86	-0.7
1,765,460	+		LRK54_RS08055	0.86	-1.4
1,765,460	+		LRK54_RS08055	0.86	-1.4
1,765,460	+		LRK54_RS08055	0.86	+0.4
1,765,460	+		LRK54_RS08055	0.86	+1.0
1,765,461	-		LRK54_RS08055	0.86	-0.0
1,765,461	-		LRK54_RS08055	0.86	-0.1
1,765,461	-		LRK54_RS08055	0.86	-3.3
1,765,461	-		LRK54_RS08055	0.86	-0.9
1,765,461	-		LRK54_RS08055	0.86	+0.0
1,765,461	-		LRK54_RS08055	0.86	-1.4
1,765,461	-		LRK54_RS08055	0.86	+0.0
1,765,461	-		LRK54_RS08055	0.86	+0.5
1,765,461	-		LRK54_RS08055	0.86	-0.9
1,765,461	-		LRK54_RS08055	0.86	-1.2
1,765,461	-		LRK54_RS08055	0.86	+1.5
1,765,461	-		LRK54_RS08055	0.86	+0.7
1,765,461	-		LRK54_RS08055	0.86	+0.0
1,765,461	-		LRK54_RS08055	0.86	-0.5
1,765,461	-		LRK54_RS08055	0.86	+0.4
1,765,461	-		LRK54_RS08055	0.86	-0.4
1,765,461	-		LRK54_RS08055	0.86	-0.6
1,765,461	-		LRK54_RS08055	0.86	+0.2
1,765,461	-		LRK54_RS08055	0.86	+0.1
1,765,502	+		LRK54_RS08055	0.88	-1.1
1,765,502	+		LRK54_RS08055	0.88	-1.5
1,765,503	-		LRK54_RS08055	0.88	-0.3
1,765,553	+		LRK54_RS08055	0.90	+0.7
1,765,553	+		LRK54_RS08055	0.90	-1.7
1,765,553	+		LRK54_RS08055	0.90	+1.7
1,765,553	+		LRK54_RS08055	0.90	-1.2
1,765,553	+		LRK54_RS08055	0.90	+0.2
1,765,554	-		LRK54_RS08055	0.90	-1.1
1,765,554	-		LRK54_RS08055	0.90	-0.0
1,765,554	-		LRK54_RS08055	0.90	+0.2
1,765,554	-		LRK54_RS08055	0.90	-0.2
1,765,590	-				-0.6
1,765,643	+				-1.5
1,765,643	+				+1.4
1,765,643	+				-1.0
1,765,643	+				-0.2
1,765,643	+				+0.2
1,765,643	+				-0.3
1,765,643	+				+0.8
1,765,643	+				-1.2
1,765,643	+				-0.4
1,765,643	+				-0.1
1,765,644	-				-0.1
1,765,644	-				+1.7
1,765,644	-				-0.2
1,765,644	-				-0.6
1,765,644	-				+0.4
1,765,644	-				-1.2
1,765,644	-				-0.6
1,765,644	-				-0.6
1,765,644	-				+2.3
1,765,644	-				+0.0
1,765,644	-				-1.2
1,765,644	-				-0.5
1,765,644	-				-1.2
1,765,682	+				-0.7
1,765,683	-				+0.0
1,765,683	-				-0.2
1,765,683	-				+3.2
1,765,683	-				+0.6
1,765,683	-				+1.1
1,765,709	+				-0.6
1,765,709	+				-0.6
1,765,709	+				-0.5
1,765,709	+				-2.3
1,765,709	+				-0.7
1,765,709	+				-1.1
1,765,710	-				+0.1
1,765,710	-				+0.7
1,765,710	-				-0.1
1,765,710	-				+0.8
1,765,710	-				-0.1
1,765,710	-				+0.1
1,765,715	+				-1.1
1,765,715	+				+1.2
1,765,715	+				-0.5
1,765,715	+				-1.1
1,765,715	+				-0.3
1,765,715	+				-1.5
1,765,735	+				-0.5
1,765,751	+				+1.2
1,765,751	+				-1.3
1,765,751	+				-0.2
1,765,751	+				-3.0
1,765,751	+				-0.5
1,765,751	+				-0.0
1,765,751	+				-1.9
1,765,752	-				+0.1
1,765,752	-				+0.4
1,765,752	-				-2.6
1,765,752	-				-0.6
1,765,752	-				+0.9
1,765,752	-				+1.8
1,765,752	-				+1.0
1,765,752	-				+0.2
1,765,790	+				+2.0
1,765,790	+				-0.3
1,765,791	-				-0.2
1,765,791	-				+0.4
1,765,791	-				+0.5
1,765,791	-				-1.0
1,765,797	+				-0.1
1,765,797	+				+2.6
1,765,798	-				+1.1
1,765,802	+				+1.9
1,765,802	+				-0.9
1,765,802	+				+1.2
1,765,802	+				+0.5
1,765,802	+				-1.7
1,765,802	+				-0.6
1,765,802	+				+1.0
1,765,802	+				-1.8
1,765,802	+				-0.3
1,765,802	+				-0.8
1,765,802	+				-0.7
1,765,802	+				-0.4
1,765,802	+				+0.2
1,765,802	+				+0.2
1,765,802	+				+1.5
1,765,802	+				-0.0
1,765,802	+				+0.0
1,765,802	+				-1.5
1,765,802	+				+0.2
1,765,802	+				-0.0
1,765,802	+				+0.9
1,765,802	+				-0.4
1,765,802	+				-0.7
1,765,803	-				-1.4
1,765,803	-				-0.3
1,765,803	-				+0.0
1,765,803	-				-1.2
1,765,803	-				+0.5
1,765,803	-				+0.8
1,765,803	-				+0.2
1,765,803	-				-0.3
1,765,803	-				+0.9
1,765,803	-				-0.2
1,765,803	-				-0.0
1,765,803	-				+0.5
1,765,803	-				+0.0
1,765,803	-				-0.1
1,765,803	-				+0.9
1,765,803	-				-0.7
1,765,803	-				-0.2
1,765,803	-				-0.7
1,765,803	-				+0.6
1,765,803	-				+0.0
1,765,803	-				+1.0
1,765,803	-				-2.1
1,765,803	-				+1.7
1,765,803	-				-0.2
1,765,803	-				-0.3
1,765,803	-				+0.5
1,765,803	-				+0.5
1,765,803	-				+0.3
1,765,803	-				+0.5
1,765,803	-				-1.9
1,765,803	-				-0.4
1,765,803	-				+1.3
1,765,993	+				+0.7
1,765,994	-				-0.1
1,765,994	-				+2.6
1,766,068	+				-0.3
1,766,068	+				-0.2
1,766,068	+				-1.6
1,766,068	+				+1.1
1,766,068	+				-0.4
1,766,068	+				-1.4
1,766,068	+				-0.3
1,766,068	+				-1.2
1,766,068	+				+0.2
1,766,068	+				+0.9
1,766,068	+				-0.1
1,766,068	+				-1.5
1,766,068	+				-0.2
1,766,068	+				+1.5
1,766,068	+				-0.2
1,766,068	+				-0.0
1,766,068	+				-0.8
1,766,068	+				+0.1
1,766,068	+				-0.6
1,766,068	+				-0.6
1,766,068	+				-0.2
1,766,068	+				-2.1
1,766,068	+				-0.8
1,766,068	+				-0.3
1,766,068	+				-0.9
1,766,068	+				+0.4
1,766,068	+				-0.3
1,766,068	+				-0.7
1,766,068	+				+0.8
1,766,069	-				+1.3
1,766,069	-				-0.0
1,766,069	-				+1.6
1,766,069	-				+0.4
1,766,069	-				-0.4
1,766,069	-				+0.2
1,766,069	-				+1.1
1,766,069	-				-1.1
1,766,069	-				+2.2
1,766,069	-				-1.6
1,766,069	-				-0.4
1,766,069	-				+0.2
1,766,069	-				-1.2
1,766,069	-				-1.4
1,766,069	-				+0.1
1,766,069	-				+0.9
1,766,069	-				-0.3
1,766,069	-				-0.1
1,766,069	-				+0.7
1,766,069	-				-1.4
1,766,069	-				-2.0
1,766,069	-				+0.8
1,766,069	-				-1.6
1,766,069	-				-0.2
1,766,069	-				-1.1
1,766,069	-				+0.6
1,766,069	-				-0.4
1,766,070	+				+0.8
1,766,070	+				+0.0
1,766,070	+				-1.0
1,766,070	+				+1.3
1,766,070	+				+0.3
1,766,070	+				-0.8
1,766,070	+				-2.2
1,766,070	+				+0.7
1,766,070	+				-0.5
1,766,070	+				-0.8
1,766,070	+				+0.9
1,766,071	-				-1.1
1,766,071	-				-0.2
1,766,071	-				+0.5
1,766,071	-				+0.9
1,766,165	+		LRK54_RS08060	0.20	-0.4
1,766,165	+		LRK54_RS08060	0.20	-0.1
1,766,165	+		LRK54_RS08060	0.20	+0.5
1,766,165	+		LRK54_RS08060	0.20	-0.8
1,766,165	+		LRK54_RS08060	0.20	-0.6
1,766,166	-		LRK54_RS08060	0.20	-2.9
1,766,166	-		LRK54_RS08060	0.20	+0.2
1,766,166	-		LRK54_RS08060	0.20	+0.1
1,766,166	-		LRK54_RS08060	0.20	+1.1
1,766,166	-		LRK54_RS08060	0.20	-1.0
1,766,166	-		LRK54_RS08060	0.20	-0.3
1,766,166	-		LRK54_RS08060	0.20	-1.7
1,766,242	-		LRK54_RS08060	0.31	-1.1
1,766,317	+		LRK54_RS08060	0.42	-1.9
1,766,317	+		LRK54_RS08060	0.42	+0.3
1,766,317	+		LRK54_RS08060	0.42	-2.0
1,766,318	-		LRK54_RS08060	0.42	-1.0
1,766,509	+		LRK54_RS08060	0.70	-1.6
1,766,510	-		LRK54_RS08060	0.70	-2.6
1,766,510	-		LRK54_RS08060	0.70	-0.9
1,766,572	+		LRK54_RS08060	0.79	+0.3
1,766,573	-		LRK54_RS08060	0.79	+0.4
1,766,667	+				-0.6
1,766,667	+				+0.1
1,766,667	+				+0.3
1,766,668	-				-0.1
1,766,686	+				-2.6
1,766,686	+				-1.7
1,766,686	+				-1.2
1,766,686	+				-0.6
1,766,686	+				+0.6
1,766,686	+				-0.3
1,766,686	+				-0.1
1,766,687	-				+0.4
1,766,687	-				-0.6
1,766,687	-				+0.5
1,766,687	-				-2.1
1,766,687	-				-0.5
1,766,687	-				-2.2
1,766,687	-				-0.2
1,766,687	-				-0.5
1,766,690	+				-3.1
1,766,690	+				-1.4
1,766,690	+				-0.3
1,766,690	+				-0.8
1,766,690	+				-1.5
1,766,690	+				-1.1
1,766,690	+				-0.6
1,766,690	+				+0.3
1,766,690	+				+0.4
1,766,690	+				-1.4
1,766,690	+				+1.4
1,766,690	+				+0.4
1,766,690	+				-0.1
1,766,690	+				-0.9
1,766,690	+				+1.6
1,766,690	+				+0.0
1,766,690	+				-2.0
1,766,690	+				-1.0
1,766,690	+				-1.3
1,766,691	-				-0.3
1,766,691	-				-0.4
1,766,691	-				-1.4
1,766,691	-				-0.5
1,766,691	-				+0.6
1,766,691	-				-0.8
1,766,691	-				-0.6
1,766,691	-				-0.5
1,766,691	-				+2.0
1,766,691	-				-2.0
1,766,691	-				-0.2
1,766,691	-				-0.4
1,766,691	-				-1.9
1,766,691	-				+1.7
1,766,691	-				+1.1
1,766,691	-				-0.1
1,766,691	-				-1.4
1,766,691	-				-1.5
1,766,832	+				+0.0
1,766,832	+				-0.9
1,766,833	-				-2.5
1,766,847	-				+0.8
1,766,854	+				+0.0
1,766,854	+				-0.3
1,766,855	-				-2.0
1,766,855	-				+1.2
1,766,855	-				+0.5
1,766,980	+		LRK54_RS08065	0.19	+0.5
1,766,980	+		LRK54_RS08065	0.19	-0.5
1,766,980	+		LRK54_RS08065	0.19	-2.1
1,766,980	+		LRK54_RS08065	0.19	-0.5
1,766,980	+		LRK54_RS08065	0.19	+1.0
1,766,980	+		LRK54_RS08065	0.19	-1.8
1,766,980	+		LRK54_RS08065	0.19	-1.2
1,766,980	+		LRK54_RS08065	0.19	-0.2
1,766,980	+		LRK54_RS08065	0.19	-0.1
1,766,981	-		LRK54_RS08065	0.19	-1.1
1,766,981	-		LRK54_RS08065	0.19	-1.2
1,766,981	-		LRK54_RS08065	0.19	+0.1
1,766,981	-		LRK54_RS08065	0.19	-0.2
1,767,075	+		LRK54_RS08065	0.26	+0.3
1,767,081	+		LRK54_RS08065	0.26	-1.7
1,767,081	+		LRK54_RS08065	0.26	+0.0
1,767,258	+		LRK54_RS08065	0.39	-0.9
1,767,259	-		LRK54_RS08065	0.39	-0.6
1,767,271	+		LRK54_RS08065	0.40	+0.5
1,767,272	-		LRK54_RS08065	0.40	-1.0
1,767,272	-		LRK54_RS08065	0.40	+0.2
1,767,272	-		LRK54_RS08065	0.40	-0.8
1,767,272	-		LRK54_RS08065	0.40	-0.5
1,767,347	+		LRK54_RS08065	0.46	-0.6
1,767,468	+		LRK54_RS08065	0.55	-0.2
1,767,468	+		LRK54_RS08065	0.55	-1.5
1,767,468	+		LRK54_RS08065	0.55	-0.6
1,767,468	+		LRK54_RS08065	0.55	-0.4
1,767,468	+		LRK54_RS08065	0.55	-2.3
1,767,469	-		LRK54_RS08065	0.55	-0.1
1,767,469	-		LRK54_RS08065	0.55	-0.5
1,767,469	-		LRK54_RS08065	0.55	+0.4
1,767,469	-		LRK54_RS08065	0.55	-0.3
1,767,469	-		LRK54_RS08065	0.55	-0.6
1,767,469	-		LRK54_RS08065	0.55	+0.1
1,767,469	-		LRK54_RS08065	0.55	+0.0
1,767,469	-		LRK54_RS08065	0.55	-0.8
1,767,585	+		LRK54_RS08065	0.63	+1.9
1,767,585	+		LRK54_RS08065	0.63	-1.0
1,767,585	+		LRK54_RS08065	0.63	+2.6
1,767,586	-		LRK54_RS08065	0.63	-0.0
1,767,702	-		LRK54_RS08065	0.72	-0.4