Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07230

Experiment: planktonic; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM;
1,550,166	+		LRK54_RS07220	0.85	-0.6
1,550,167	-		LRK54_RS07220	0.85	+1.3
1,550,208	+		LRK54_RS07220	0.90	-1.1
1,550,208	+		LRK54_RS07220	0.90	-1.0
1,550,208	+		LRK54_RS07220	0.90	+0.5
1,550,209	-				+0.1
1,550,209	-				+0.1
1,550,295	+				-1.2
1,550,295	+				-1.5
1,550,295	+				-2.4
1,550,295	+				-1.1
1,550,296	-				-0.1
1,550,296	-				-1.3
1,550,296	-				-1.7
1,550,296	-				-1.2
1,550,296	-				-1.0
1,550,296	-				-1.2
1,550,296	-				-2.5
1,550,296	-				+0.1
1,550,296	-				-1.6
1,550,320	+				+1.9
1,550,320	+				-0.7
1,550,321	-				-0.2
1,550,454	+		LRK54_RS07225	0.15	-1.2
1,550,454	+		LRK54_RS07225	0.15	-1.8
1,550,454	+		LRK54_RS07225	0.15	-2.0
1,550,454	+		LRK54_RS07225	0.15	-1.5
1,550,454	+		LRK54_RS07225	0.15	-3.2
1,550,454	+		LRK54_RS07225	0.15	-3.1
1,550,454	+		LRK54_RS07225	0.15	-1.0
1,550,454	+		LRK54_RS07225	0.15	-0.7
1,550,454	+		LRK54_RS07225	0.15	-2.2
1,550,454	+		LRK54_RS07225	0.15	-1.3
1,550,454	+		LRK54_RS07225	0.15	-0.5
1,550,454	+		LRK54_RS07225	0.15	-2.1
1,550,454	+		LRK54_RS07225	0.15	-2.4
1,550,455	-		LRK54_RS07225	0.15	-1.2
1,550,455	-		LRK54_RS07225	0.15	-1.5
1,550,455	-		LRK54_RS07225	0.15	-1.9
1,550,455	-		LRK54_RS07225	0.15	-2.5
1,550,455	-		LRK54_RS07225	0.15	-0.1
1,550,455	-		LRK54_RS07225	0.15	-0.4
1,550,455	-		LRK54_RS07225	0.15	+1.3
1,550,455	-		LRK54_RS07225	0.15	-1.2
1,550,455	-		LRK54_RS07225	0.15	-2.2
1,550,455	-		LRK54_RS07225	0.15	+2.1
1,550,455	-		LRK54_RS07225	0.15	-0.0
1,550,455	-		LRK54_RS07225	0.15	+0.1
1,550,455	-		LRK54_RS07225	0.15	-2.0
1,550,455	-		LRK54_RS07225	0.15	-1.3
1,550,455	-		LRK54_RS07225	0.15	-0.2
1,550,455	-		LRK54_RS07225	0.15	-0.6
1,550,455	-		LRK54_RS07225	0.15	-0.9
1,550,455	-		LRK54_RS07225	0.15	-2.5
1,550,455	-		LRK54_RS07225	0.15	-1.2
1,550,455	-		LRK54_RS07225	0.15	-0.4
1,550,455	-		LRK54_RS07225	0.15	+2.3
1,550,456	+		LRK54_RS07225	0.15	+0.3
1,550,456	+		LRK54_RS07225	0.15	-1.6
1,550,456	+		LRK54_RS07225	0.15	-1.2
1,550,456	+		LRK54_RS07225	0.15	+3.3
1,550,457	-		LRK54_RS07225	0.15	+0.1
1,550,457	-		LRK54_RS07225	0.15	+1.4
1,550,457	-		LRK54_RS07225	0.15	-1.8
1,550,457	-		LRK54_RS07225	0.15	-1.9
1,550,465	+		LRK54_RS07225	0.16	-0.9
1,550,472	+		LRK54_RS07225	0.18	-2.9
1,550,472	+		LRK54_RS07225	0.18	-2.1
1,550,472	+		LRK54_RS07225	0.18	-0.5
1,550,472	+		LRK54_RS07225	0.18	-1.9
1,550,472	+		LRK54_RS07225	0.18	-0.6
1,550,472	+		LRK54_RS07225	0.18	-0.6
1,550,472	+		LRK54_RS07225	0.18	-1.3
1,550,472	+		LRK54_RS07225	0.18	-0.0
1,550,472	+		LRK54_RS07225	0.18	-1.5
1,550,472	+		LRK54_RS07225	0.18	-1.2
1,550,472	+		LRK54_RS07225	0.18	-1.1
1,550,472	+		LRK54_RS07225	0.18	-1.9
1,550,472	+		LRK54_RS07225	0.18	-1.2
1,550,472	+		LRK54_RS07225	0.18	-1.5
1,550,472	+		LRK54_RS07225	0.18	-0.0
1,550,472	+		LRK54_RS07225	0.18	-2.3
1,550,472	+		LRK54_RS07225	0.18	+0.3
1,550,472	+		LRK54_RS07225	0.18	-1.1
1,550,473	-		LRK54_RS07225	0.18	-1.9
1,550,473	-		LRK54_RS07225	0.18	-2.5
1,550,473	-		LRK54_RS07225	0.18	-1.3
1,550,473	-		LRK54_RS07225	0.18	+1.3
1,550,473	-		LRK54_RS07225	0.18	-1.2
1,550,473	-		LRK54_RS07225	0.18	-0.3
1,550,473	-		LRK54_RS07225	0.18	-0.9
1,550,473	-		LRK54_RS07225	0.18	-1.2
1,550,473	-		LRK54_RS07225	0.18	+0.8
1,550,473	-		LRK54_RS07225	0.18	+0.3
1,550,473	-		LRK54_RS07225	0.18	-0.4
1,550,473	-		LRK54_RS07225	0.18	-1.7
1,550,473	-		LRK54_RS07225	0.18	-0.2
1,550,473	-		LRK54_RS07225	0.18	-1.9
1,550,473	-		LRK54_RS07225	0.18	-2.1
1,550,502	+		LRK54_RS07225	0.22	-0.6
1,550,502	+		LRK54_RS07225	0.22	-1.2
1,550,502	+		LRK54_RS07225	0.22	-1.3
1,550,502	+		LRK54_RS07225	0.22	-2.9
1,550,502	+		LRK54_RS07225	0.22	-1.8
1,550,502	+		LRK54_RS07225	0.22	+0.1
1,550,502	+		LRK54_RS07225	0.22	-2.9
1,550,503	-		LRK54_RS07225	0.22	-1.0
1,550,503	-		LRK54_RS07225	0.22	-0.5
1,550,503	-		LRK54_RS07225	0.22	-3.0
1,550,503	-		LRK54_RS07225	0.22	-2.0
1,550,503	-		LRK54_RS07225	0.22	-2.3
1,550,544	+		LRK54_RS07225	0.29	-0.9
1,550,544	+		LRK54_RS07225	0.29	-1.0
1,550,544	+		LRK54_RS07225	0.29	-0.2
1,550,544	+		LRK54_RS07225	0.29	+0.5
1,550,545	-		LRK54_RS07225	0.29	-0.3
1,550,545	-		LRK54_RS07225	0.29	-1.8
1,550,545	-		LRK54_RS07225	0.29	-2.5
1,550,545	-		LRK54_RS07225	0.29	-1.7
1,550,545	-		LRK54_RS07225	0.29	+0.1
1,550,545	-		LRK54_RS07225	0.29	+0.1
1,550,661	+		LRK54_RS07225	0.47	-0.2
1,550,661	+		LRK54_RS07225	0.47	-1.9
1,550,661	+		LRK54_RS07225	0.47	-0.3
1,550,662	-		LRK54_RS07225	0.47	-0.8
1,550,662	-		LRK54_RS07225	0.47	-2.7
1,550,662	-		LRK54_RS07225	0.47	-1.7
1,550,662	-		LRK54_RS07225	0.47	-0.8
1,550,662	-		LRK54_RS07225	0.47	-1.4
1,550,673	+		LRK54_RS07225	0.48	+0.6
1,550,673	+		LRK54_RS07225	0.48	-1.9
1,550,673	+		LRK54_RS07225	0.48	-0.7
1,550,673	+		LRK54_RS07225	0.48	-1.9
1,550,673	+		LRK54_RS07225	0.48	-1.5
1,550,673	+		LRK54_RS07225	0.48	-1.5
1,550,673	+		LRK54_RS07225	0.48	-1.7
1,550,673	+		LRK54_RS07225	0.48	-0.6
1,550,673	+		LRK54_RS07225	0.48	-1.2
1,550,673	+		LRK54_RS07225	0.48	-0.2
1,550,673	+		LRK54_RS07225	0.48	-2.0
1,550,673	+		LRK54_RS07225	0.48	-0.5
1,550,674	-		LRK54_RS07225	0.49	-2.9
1,550,674	-		LRK54_RS07225	0.49	-1.2
1,550,674	-		LRK54_RS07225	0.49	-1.5
1,550,674	-		LRK54_RS07225	0.49	-0.3
1,550,674	-		LRK54_RS07225	0.49	-1.5
1,550,674	-		LRK54_RS07225	0.49	-0.0
1,550,674	-		LRK54_RS07225	0.49	-0.0
1,550,674	-		LRK54_RS07225	0.49	-2.0
1,550,674	-		LRK54_RS07225	0.49	+0.1
1,550,674	-		LRK54_RS07225	0.49	-2.3
1,550,674	-		LRK54_RS07225	0.49	-1.0
1,550,674	-		LRK54_RS07225	0.49	-1.0
1,550,674	-		LRK54_RS07225	0.49	-0.4
1,550,674	-		LRK54_RS07225	0.49	-0.1
1,550,674	-		LRK54_RS07225	0.49	-1.5
1,550,674	-		LRK54_RS07225	0.49	-0.5
1,550,674	-		LRK54_RS07225	0.49	+1.0
1,550,674	-		LRK54_RS07225	0.49	-2.2
1,550,674	-		LRK54_RS07225	0.49	-2.4
1,550,674	-		LRK54_RS07225	0.49	-1.2
1,550,674	-		LRK54_RS07225	0.49	-2.7
1,550,676	+		LRK54_RS07225	0.49	-0.5
1,550,676	+		LRK54_RS07225	0.49	+0.3
1,550,676	+		LRK54_RS07225	0.49	-0.2
1,550,676	+		LRK54_RS07225	0.49	-0.7
1,550,676	+		LRK54_RS07225	0.49	-0.6
1,550,676	+		LRK54_RS07225	0.49	-1.6
1,550,676	+		LRK54_RS07225	0.49	+0.3
1,550,677	-		LRK54_RS07225	0.49	-2.3
1,550,677	-		LRK54_RS07225	0.49	-0.6
1,550,677	-		LRK54_RS07225	0.49	-2.2
1,550,677	-		LRK54_RS07225	0.49	-0.9
1,550,677	-		LRK54_RS07225	0.49	-1.2
1,550,677	-		LRK54_RS07225	0.49	-1.9
1,550,677	-		LRK54_RS07225	0.49	-0.6
1,550,677	-		LRK54_RS07225	0.49	-1.2
1,550,677	-		LRK54_RS07225	0.49	-0.6
1,550,677	-		LRK54_RS07225	0.49	-0.6
1,550,677	-		LRK54_RS07225	0.49	-1.5
1,550,677	-		LRK54_RS07225	0.49	-0.8
1,550,677	-		LRK54_RS07225	0.49	-1.6
1,550,748	+		LRK54_RS07225	0.60	-3.2
1,550,749	-		LRK54_RS07225	0.60	-1.0
1,550,784	+		LRK54_RS07225	0.65	-1.7
1,550,784	+		LRK54_RS07225	0.65	-1.5
1,550,784	+		LRK54_RS07225	0.65	-1.9
1,550,784	+		LRK54_RS07225	0.65	-1.5
1,550,784	+		LRK54_RS07225	0.65	-1.8
1,550,784	+		LRK54_RS07225	0.65	-1.3
1,550,784	+		LRK54_RS07225	0.65	-2.9
1,550,784	+		LRK54_RS07225	0.65	+4.3
1,550,784	+		LRK54_RS07225	0.65	+0.3
1,550,784	+		LRK54_RS07225	0.65	+0.4
1,550,784	+		LRK54_RS07225	0.65	-1.0
1,550,784	+		LRK54_RS07225	0.65	-2.0
1,550,785	-		LRK54_RS07225	0.66	-1.3
1,550,785	-		LRK54_RS07225	0.66	+2.3
1,550,785	-		LRK54_RS07225	0.66	+1.3
1,550,785	-		LRK54_RS07225	0.66	-1.0
1,550,785	-		LRK54_RS07225	0.66	-1.3
1,550,785	-		LRK54_RS07225	0.66	-0.6
1,550,785	-		LRK54_RS07225	0.66	-1.0
1,550,785	-		LRK54_RS07225	0.66	-1.6
1,550,785	-		LRK54_RS07225	0.66	-2.3
1,550,785	-		LRK54_RS07225	0.66	-1.9
1,550,785	-		LRK54_RS07225	0.66	-2.3
1,550,785	-		LRK54_RS07225	0.66	-0.6
1,550,785	-		LRK54_RS07225	0.66	-2.1
1,550,785	-		LRK54_RS07225	0.66	-0.5
1,550,785	-		LRK54_RS07225	0.66	-1.8
1,550,785	-		LRK54_RS07225	0.66	-0.6
1,550,785	-		LRK54_RS07225	0.66	-1.3
1,550,925	+		LRK54_RS07225	0.87	+0.5
1,550,925	+		LRK54_RS07225	0.87	+0.1
1,550,925	+		LRK54_RS07225	0.87	-0.4
1,550,925	+		LRK54_RS07225	0.87	-1.5
1,550,925	+		LRK54_RS07225	0.87	+0.1
1,550,925	+		LRK54_RS07225	0.87	+1.4
1,550,925	+		LRK54_RS07225	0.87	-2.1
1,550,925	+		LRK54_RS07225	0.87	-1.1
1,550,925	+		LRK54_RS07225	0.87	-1.0
1,550,925	+		LRK54_RS07225	0.87	-0.2
1,550,926	-		LRK54_RS07225	0.87	+0.5
1,550,926	-		LRK54_RS07225	0.87	-0.3
1,550,926	-		LRK54_RS07225	0.87	-2.4
1,550,926	-		LRK54_RS07225	0.87	-1.0
1,550,926	-		LRK54_RS07225	0.87	-0.1
1,550,926	-		LRK54_RS07225	0.87	-0.2
1,550,926	-		LRK54_RS07225	0.87	-0.2
1,550,926	-		LRK54_RS07225	0.87	-0.8
1,551,006	+				-2.3
1,551,006	+				-2.0
1,551,006	+				-0.5
1,551,006	+				+0.7
1,551,006	+				-1.4
1,551,006	+				-0.4
1,551,006	+				-0.3
1,551,006	+				+0.3
1,551,006	+				-3.2
1,551,006	+				-1.8
1,551,006	+				+0.5
1,551,006	+				+0.5
1,551,006	+				-2.4
1,551,006	+				+0.3
1,551,006	+				+0.2
1,551,007	-				-2.7
1,551,007	-				-0.9
1,551,007	-				-0.7
1,551,007	-				-3.4
1,551,007	-				-0.7
1,551,007	-				-0.0
1,551,007	-				-2.3
1,551,007	-				-0.4
1,551,007	-				-1.8
1,551,007	-				-1.7
1,551,007	-				+0.6
1,551,007	-				-0.7
1,551,007	-				-2.2
1,551,133	+				+0.1
1,551,133	+				-0.5
1,551,133	+				-0.0
1,551,133	+				-3.0
1,551,133	+				-1.9
1,551,133	+				-1.9
1,551,133	+				-0.2
1,551,133	+				-1.6
1,551,133	+				-0.5
1,551,133	+				-1.1
1,551,133	+				-0.8
1,551,133	+				-1.3
1,551,133	+				-2.1
1,551,133	+				-2.2
1,551,133	+				-0.5
1,551,133	+				-1.1
1,551,133	+				-0.5
1,551,133	+				-0.2
1,551,133	+				-3.0
1,551,134	-				-3.3
1,551,134	-				-2.4
1,551,134	-				-1.2
1,551,134	-				-1.5
1,551,134	-				-0.2
1,551,134	-				-1.9
1,551,134	-				-2.7
1,551,134	-				-1.3
1,551,134	-				-0.8
1,551,134	-				-0.1
1,551,134	-				-0.5
1,551,134	-				+1.5
1,551,134	-				-2.9
1,551,134	-				-2.2
1,551,134	-				-1.5
1,551,134	-				-1.2
1,551,134	-				+0.3
1,551,134	-				+0.5
1,551,134	-				-3.1
1,551,134	-				-2.4
1,551,134	-				-0.5
1,551,134	-				+0.3
1,551,134	-				-2.6
1,551,134	-				-2.4
1,551,134	-				-1.9
1,551,134	-				-2.4
1,551,134	-				-0.5
1,551,134	-				-0.5
1,551,134	-				-0.6
1,551,134	-				-2.7
1,551,210	+				-0.1
1,551,210	+				-0.9
1,551,210	+				-2.5
1,551,210	+				-0.7
1,551,210	+				-1.9
1,551,210	+				-0.8
1,551,210	+				-0.7
1,551,210	+				-1.4
1,551,211	-				-1.7
1,551,211	-				+1.3
1,551,211	-				-0.7
1,551,211	-				-0.4
1,551,211	-				-1.4
1,551,211	-				-1.4
1,551,211	-				-2.6
1,551,238	+		LRK54_RS07230	0.11	-4.1
1,551,247	+		LRK54_RS07230	0.13	+1.1
1,551,247	+		LRK54_RS07230	0.13	+0.0
1,551,247	+		LRK54_RS07230	0.13	-1.2
1,551,247	+		LRK54_RS07230	0.13	-1.7
1,551,247	+		LRK54_RS07230	0.13	-0.5
1,551,247	+		LRK54_RS07230	0.13	-2.0
1,551,247	+		LRK54_RS07230	0.13	-0.9
1,551,247	+		LRK54_RS07230	0.13	-1.3
1,551,247	+		LRK54_RS07230	0.13	+0.0
1,551,247	+		LRK54_RS07230	0.13	-2.3
1,551,247	+		LRK54_RS07230	0.13	-1.7
1,551,247	+		LRK54_RS07230	0.13	-1.3
1,551,247	+		LRK54_RS07230	0.13	+3.3
1,551,247	+		LRK54_RS07230	0.13	-0.7
1,551,247	+		LRK54_RS07230	0.13	-0.8
1,551,247	+		LRK54_RS07230	0.13	+0.2
1,551,247	+		LRK54_RS07230	0.13	-2.2
1,551,247	+		LRK54_RS07230	0.13	-0.5
1,551,248	-		LRK54_RS07230	0.13	-0.4
1,551,248	-		LRK54_RS07230	0.13	-1.3
1,551,248	-		LRK54_RS07230	0.13	-1.2
1,551,248	-		LRK54_RS07230	0.13	-0.7
1,551,248	-		LRK54_RS07230	0.13	-1.3
1,551,248	-		LRK54_RS07230	0.13	-0.6
1,551,248	-		LRK54_RS07230	0.13	-0.5
1,551,248	-		LRK54_RS07230	0.13	-2.3
1,551,248	-		LRK54_RS07230	0.13	-0.9
1,551,248	-		LRK54_RS07230	0.13	-1.7
1,551,248	-		LRK54_RS07230	0.13	-1.8
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1,551,248	-		LRK54_RS07230	0.13	-2.5
1,551,248	-		LRK54_RS07230	0.13	-0.2
1,551,248	-		LRK54_RS07230	0.13	-2.6
1,551,248	-		LRK54_RS07230	0.13	-3.0
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1,551,248	-		LRK54_RS07230	0.13	+2.3
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1,551,400	+		LRK54_RS07230	0.31	-1.3
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1,552,239	+		LRK54_RS07235	0.69	-2.3
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1,552,750	+		LRK54_RS07240	0.30	-1.7
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1,552,751	-		LRK54_RS07240	0.30	+2.1
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1,552,751	-		LRK54_RS07240	0.30	-2.8
1,552,751	-		LRK54_RS07240	0.30	-1.7
1,552,751	-		LRK54_RS07240	0.30	-1.6
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1,552,751	-		LRK54_RS07240	0.30	-0.4
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