Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12485

Experiment: biofilm; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM;
2,783,467	-		LRK54_RS12480	0.18	+0.6
2,783,500	+		LRK54_RS12480	0.21	+0.3
2,783,501	-		LRK54_RS12480	0.21	-0.6
2,783,526	+		LRK54_RS12480	0.24	-0.1
2,783,526	+		LRK54_RS12480	0.24	-1.6
2,783,526	+		LRK54_RS12480	0.24	+0.1
2,783,527	-		LRK54_RS12480	0.24	-1.5
2,783,527	-		LRK54_RS12480	0.24	-1.2
2,783,637	+		LRK54_RS12480	0.35	-0.6
2,783,637	+		LRK54_RS12480	0.35	-2.2
2,783,637	+		LRK54_RS12480	0.35	-0.8
2,783,637	+		LRK54_RS12480	0.35	-0.7
2,783,637	+		LRK54_RS12480	0.35	-0.0
2,783,637	+		LRK54_RS12480	0.35	-2.1
2,783,637	+		LRK54_RS12480	0.35	+0.8
2,783,638	-		LRK54_RS12480	0.35	+0.8
2,783,638	-		LRK54_RS12480	0.35	-1.9
2,783,638	-		LRK54_RS12480	0.35	+0.5
2,783,638	-		LRK54_RS12480	0.35	-1.1
2,783,638	-		LRK54_RS12480	0.35	+1.2
2,783,638	-		LRK54_RS12480	0.35	-0.4
2,783,705	+		LRK54_RS12480	0.42	-0.6
2,783,705	+		LRK54_RS12480	0.42	-1.1
2,783,705	+		LRK54_RS12480	0.42	-0.3
2,783,705	+		LRK54_RS12480	0.42	-0.2
2,783,705	+		LRK54_RS12480	0.42	-0.6
2,783,705	+		LRK54_RS12480	0.42	+0.3
2,783,705	+		LRK54_RS12480	0.42	+0.6
2,783,705	+		LRK54_RS12480	0.42	+1.3
2,783,706	-		LRK54_RS12480	0.42	+1.1
2,783,706	-		LRK54_RS12480	0.42	-0.2
2,783,706	-		LRK54_RS12480	0.42	-1.3
2,783,706	-		LRK54_RS12480	0.42	-0.6
2,783,706	-		LRK54_RS12480	0.42	+0.4
2,783,706	-		LRK54_RS12480	0.42	+0.1
2,783,706	-		LRK54_RS12480	0.42	-0.6
2,783,736	+		LRK54_RS12480	0.45	+0.3
2,783,736	+		LRK54_RS12480	0.45	+0.2
2,783,736	+		LRK54_RS12480	0.45	+0.3
2,783,736	+		LRK54_RS12480	0.45	-0.0
2,783,736	+		LRK54_RS12480	0.45	-1.0
2,783,736	+		LRK54_RS12480	0.45	-0.8
2,783,736	+		LRK54_RS12480	0.45	-1.1
2,783,736	+		LRK54_RS12480	0.45	-0.1
2,783,736	+		LRK54_RS12480	0.45	-2.5
2,783,736	+		LRK54_RS12480	0.45	-0.2
2,783,736	+		LRK54_RS12480	0.45	+0.4
2,783,736	+		LRK54_RS12480	0.45	+0.6
2,783,736	+		LRK54_RS12480	0.45	-1.0
2,783,736	+		LRK54_RS12480	0.45	-1.3
2,783,736	+		LRK54_RS12480	0.45	+2.1
2,783,736	+		LRK54_RS12480	0.45	+0.5
2,783,736	+		LRK54_RS12480	0.45	+0.1
2,783,736	+		LRK54_RS12480	0.45	-0.2
2,783,737	-		LRK54_RS12480	0.46	+0.5
2,783,737	-		LRK54_RS12480	0.46	-1.3
2,783,737	-		LRK54_RS12480	0.46	+0.7
2,783,737	-		LRK54_RS12480	0.46	-1.0
2,783,737	-		LRK54_RS12480	0.46	+0.2
2,783,737	-		LRK54_RS12480	0.46	+0.4
2,783,737	-		LRK54_RS12480	0.46	+0.0
2,783,737	-		LRK54_RS12480	0.46	+0.3
2,783,737	-		LRK54_RS12480	0.46	-0.3
2,783,737	-		LRK54_RS12480	0.46	-0.3
2,783,737	-		LRK54_RS12480	0.46	-0.7
2,783,737	-		LRK54_RS12480	0.46	-0.2
2,783,737	-		LRK54_RS12480	0.46	-0.0
2,783,737	-		LRK54_RS12480	0.46	-0.5
2,783,737	-		LRK54_RS12480	0.46	+0.0
2,783,737	-		LRK54_RS12480	0.46	-1.1
2,783,737	-		LRK54_RS12480	0.46	+1.4
2,783,737	-		LRK54_RS12480	0.46	-0.1
2,783,737	-		LRK54_RS12480	0.46	+0.9
2,783,737	-		LRK54_RS12480	0.46	+0.0
2,783,737	-		LRK54_RS12480	0.46	+1.8
2,783,737	-		LRK54_RS12480	0.46	-2.6
2,783,737	-		LRK54_RS12480	0.46	-1.3
2,783,737	-		LRK54_RS12480	0.46	-1.6
2,783,737	-		LRK54_RS12480	0.46	-0.0
2,783,737	-		LRK54_RS12480	0.46	-1.1
2,783,737	-		LRK54_RS12480	0.46	-1.1
2,783,796	+		LRK54_RS12480	0.52	-0.7
2,783,796	+		LRK54_RS12480	0.52	+0.4
2,783,797	-		LRK54_RS12480	0.52	+1.9
2,783,799	+		LRK54_RS12480	0.52	-1.2
2,783,799	+		LRK54_RS12480	0.52	-1.6
2,783,799	+		LRK54_RS12480	0.52	+0.1
2,783,799	+		LRK54_RS12480	0.52	+0.6
2,783,799	+		LRK54_RS12480	0.52	-2.7
2,783,799	+		LRK54_RS12480	0.52	-0.4
2,783,799	+		LRK54_RS12480	0.52	+0.5
2,783,799	+		LRK54_RS12480	0.52	-1.1
2,783,799	+		LRK54_RS12480	0.52	-0.6
2,783,799	+		LRK54_RS12480	0.52	-0.7
2,783,799	+		LRK54_RS12480	0.52	+0.5
2,783,799	+		LRK54_RS12480	0.52	+1.0
2,783,799	+		LRK54_RS12480	0.52	-0.2
2,783,799	+		LRK54_RS12480	0.52	-1.6
2,783,799	+		LRK54_RS12480	0.52	-0.8
2,783,799	+		LRK54_RS12480	0.52	+1.4
2,783,799	+		LRK54_RS12480	0.52	-1.0
2,783,799	+		LRK54_RS12480	0.52	+0.2
2,783,799	+		LRK54_RS12480	0.52	-0.2
2,783,799	+		LRK54_RS12480	0.52	+0.0
2,783,799	+		LRK54_RS12480	0.52	-0.0
2,783,799	+		LRK54_RS12480	0.52	-1.2
2,783,800	-		LRK54_RS12480	0.52	-1.3
2,783,800	-		LRK54_RS12480	0.52	+0.2
2,783,800	-		LRK54_RS12480	0.52	+0.8
2,783,800	-		LRK54_RS12480	0.52	+1.6
2,783,800	-		LRK54_RS12480	0.52	-0.9
2,783,800	-		LRK54_RS12480	0.52	+1.8
2,783,800	-		LRK54_RS12480	0.52	-0.7
2,783,800	-		LRK54_RS12480	0.52	-1.1
2,783,800	-		LRK54_RS12480	0.52	-0.2
2,783,800	-		LRK54_RS12480	0.52	+0.4
2,783,800	-		LRK54_RS12480	0.52	-1.2
2,783,800	-		LRK54_RS12480	0.52	+1.6
2,783,800	-		LRK54_RS12480	0.52	+1.4
2,783,800	-		LRK54_RS12480	0.52	+1.5
2,783,800	-		LRK54_RS12480	0.52	-1.6
2,783,800	-		LRK54_RS12480	0.52	+0.8
2,783,800	-		LRK54_RS12480	0.52	-1.1
2,783,800	-		LRK54_RS12480	0.52	+0.3
2,783,871	+		LRK54_RS12480	0.59	-1.3
2,783,871	+		LRK54_RS12480	0.59	-0.7
2,783,871	+		LRK54_RS12480	0.59	-1.2
2,783,871	+		LRK54_RS12480	0.59	+0.3
2,783,871	+		LRK54_RS12480	0.59	-0.3
2,783,871	+		LRK54_RS12480	0.59	-0.1
2,783,872	-		LRK54_RS12480	0.59	+0.3
2,783,872	-		LRK54_RS12480	0.59	+2.8
2,783,872	-		LRK54_RS12480	0.59	-1.5
2,783,872	-		LRK54_RS12480	0.59	-0.3
2,783,872	-		LRK54_RS12480	0.59	-0.8
2,783,872	-		LRK54_RS12480	0.59	-0.2
2,783,872	-		LRK54_RS12480	0.59	+1.3
2,783,872	-		LRK54_RS12480	0.59	-0.2
2,783,872	-		LRK54_RS12480	0.59	+0.2
2,783,872	-		LRK54_RS12480	0.59	-0.6
2,783,872	-		LRK54_RS12480	0.59	+0.3
2,783,872	-		LRK54_RS12480	0.59	-0.0
2,783,872	-		LRK54_RS12480	0.59	+2.3
2,783,872	-		LRK54_RS12480	0.59	+0.6
2,783,872	-		LRK54_RS12480	0.59	-0.1
2,783,872	-		LRK54_RS12480	0.59	+0.1
2,784,150	+		LRK54_RS12480	0.88	-0.4
2,784,150	+		LRK54_RS12480	0.88	-0.7
2,784,150	+		LRK54_RS12480	0.88	-0.4
2,784,150	+		LRK54_RS12480	0.88	-0.4
2,784,150	+		LRK54_RS12480	0.88	+0.3
2,784,151	-		LRK54_RS12480	0.88	-1.0
2,784,151	-		LRK54_RS12480	0.88	-1.3
2,784,490	+		LRK54_RS12485	0.15	-2.3
2,784,490	+		LRK54_RS12485	0.15	-0.2
2,784,490	+		LRK54_RS12485	0.15	+0.9
2,784,490	+		LRK54_RS12485	0.15	+1.1
2,784,490	+		LRK54_RS12485	0.15	-0.7
2,784,490	+		LRK54_RS12485	0.15	+1.7
2,784,490	+		LRK54_RS12485	0.15	-0.8
2,784,490	+		LRK54_RS12485	0.15	-1.1
2,784,490	+		LRK54_RS12485	0.15	-2.0
2,784,490	+		LRK54_RS12485	0.15	-1.8
2,784,490	+		LRK54_RS12485	0.15	-0.6
2,784,490	+		LRK54_RS12485	0.15	-0.7
2,784,490	+		LRK54_RS12485	0.15	-1.0
2,784,490	+		LRK54_RS12485	0.15	-0.7
2,784,490	+		LRK54_RS12485	0.15	-0.4
2,784,490	+		LRK54_RS12485	0.15	-0.0
2,784,490	+		LRK54_RS12485	0.15	-1.9
2,784,490	+		LRK54_RS12485	0.15	-0.5
2,784,490	+		LRK54_RS12485	0.15	+0.5
2,784,490	+		LRK54_RS12485	0.15	+3.1
2,784,490	+		LRK54_RS12485	0.15	-0.8
2,784,491	-		LRK54_RS12485	0.15	+1.5
2,784,491	-		LRK54_RS12485	0.15	-2.3
2,784,491	-		LRK54_RS12485	0.15	+1.2
2,784,491	-		LRK54_RS12485	0.15	-0.1
2,784,491	-		LRK54_RS12485	0.15	-1.2
2,784,491	-		LRK54_RS12485	0.15	+2.4
2,784,491	-		LRK54_RS12485	0.15	+0.1
2,784,491	-		LRK54_RS12485	0.15	+0.3
2,784,491	-		LRK54_RS12485	0.15	-0.6
2,784,491	-		LRK54_RS12485	0.15	-0.8
2,784,491	-		LRK54_RS12485	0.15	-0.5
2,784,491	-		LRK54_RS12485	0.15	-0.4
2,784,491	-		LRK54_RS12485	0.15	+0.4
2,784,491	-		LRK54_RS12485	0.15	-1.4
2,784,491	-		LRK54_RS12485	0.15	-2.0
2,784,491	-		LRK54_RS12485	0.15	-0.9
2,784,491	-		LRK54_RS12485	0.15	+0.0
2,784,491	-		LRK54_RS12485	0.15	+0.4
2,784,491	-		LRK54_RS12485	0.15	-2.5
2,784,491	-		LRK54_RS12485	0.15	+0.8
2,784,491	-		LRK54_RS12485	0.15	-1.6
2,784,491	-		LRK54_RS12485	0.15	+1.3
2,784,491	-		LRK54_RS12485	0.15	-0.3
2,784,491	-		LRK54_RS12485	0.15	+0.5
2,784,491	-		LRK54_RS12485	0.15	-0.1
2,784,491	-		LRK54_RS12485	0.15	-0.3
2,784,491	-		LRK54_RS12485	0.15	+0.6
2,784,491	-		LRK54_RS12485	0.15	+1.5
2,784,491	-		LRK54_RS12485	0.15	+0.4
2,784,491	-		LRK54_RS12485	0.15	-1.3
2,784,724	+		LRK54_RS12485	0.31	+0.5
2,784,724	+		LRK54_RS12485	0.31	-1.7
2,784,724	+		LRK54_RS12485	0.31	+0.4
2,784,724	+		LRK54_RS12485	0.31	-0.3
2,784,724	+		LRK54_RS12485	0.31	-1.1
2,784,724	+		LRK54_RS12485	0.31	-1.0
2,784,725	-		LRK54_RS12485	0.31	+1.0
2,784,725	-		LRK54_RS12485	0.31	-0.7
2,784,725	-		LRK54_RS12485	0.31	+0.6
2,784,725	-		LRK54_RS12485	0.31	-1.7
2,784,725	-		LRK54_RS12485	0.31	-2.1
2,784,725	-		LRK54_RS12485	0.31	-0.5
2,784,725	-		LRK54_RS12485	0.31	+1.3
2,784,725	-		LRK54_RS12485	0.31	-1.0
2,784,725	-		LRK54_RS12485	0.31	-0.9
2,784,886	+		LRK54_RS12485	0.41	-0.4
2,784,886	+		LRK54_RS12485	0.41	-0.3
2,784,887	-		LRK54_RS12485	0.41	+1.1
2,784,887	-		LRK54_RS12485	0.41	-2.1
2,784,887	-		LRK54_RS12485	0.41	+1.3
2,784,887	-		LRK54_RS12485	0.41	+0.5
2,784,887	-		LRK54_RS12485	0.41	-1.1
2,784,887	-		LRK54_RS12485	0.41	+1.5
2,784,887	-		LRK54_RS12485	0.41	-2.0
2,784,887	-		LRK54_RS12485	0.41	+1.3
2,784,916	+		LRK54_RS12485	0.43	-1.7
2,784,916	+		LRK54_RS12485	0.43	+0.5
2,784,916	+		LRK54_RS12485	0.43	-1.1
2,784,916	+		LRK54_RS12485	0.43	+2.1
2,784,916	+		LRK54_RS12485	0.43	+1.3
2,784,916	+		LRK54_RS12485	0.43	-0.3
2,784,916	+		LRK54_RS12485	0.43	+0.6
2,784,916	+		LRK54_RS12485	0.43	-1.0
2,784,916	+		LRK54_RS12485	0.43	+0.6
2,784,916	+		LRK54_RS12485	0.43	-0.5
2,784,916	+		LRK54_RS12485	0.43	+1.0
2,784,917	-		LRK54_RS12485	0.43	-0.5
2,784,917	-		LRK54_RS12485	0.43	+0.9
2,784,917	-		LRK54_RS12485	0.43	+0.2
2,784,917	-		LRK54_RS12485	0.43	-1.4
2,784,917	-		LRK54_RS12485	0.43	+2.5
2,784,917	-		LRK54_RS12485	0.43	-2.5
2,784,917	-		LRK54_RS12485	0.43	-0.5
2,784,917	-		LRK54_RS12485	0.43	-0.9
2,784,917	-		LRK54_RS12485	0.43	-0.2
2,784,917	-		LRK54_RS12485	0.43	-2.1
2,784,917	-		LRK54_RS12485	0.43	+0.6
2,784,917	-		LRK54_RS12485	0.43	+1.3
2,784,917	-		LRK54_RS12485	0.43	-1.5
2,784,940	+		LRK54_RS12485	0.45	-1.9
2,784,940	+		LRK54_RS12485	0.45	+0.9
2,784,940	+		LRK54_RS12485	0.45	-1.2
2,784,940	+		LRK54_RS12485	0.45	+2.0
2,784,940	+		LRK54_RS12485	0.45	+0.8
2,784,941	-		LRK54_RS12485	0.45	-0.3
2,784,941	-		LRK54_RS12485	0.45	+0.8
2,784,941	-		LRK54_RS12485	0.45	-0.2
2,784,941	-		LRK54_RS12485	0.45	+0.8
2,784,941	-		LRK54_RS12485	0.45	+1.4
2,784,941	-		LRK54_RS12485	0.45	-0.4
2,784,941	-		LRK54_RS12485	0.45	-1.5
2,785,192	+		LRK54_RS12485	0.61	-1.2
2,785,192	+		LRK54_RS12485	0.61	-0.2
2,785,192	+		LRK54_RS12485	0.61	+0.8
2,785,192	+		LRK54_RS12485	0.61	-1.4
2,785,192	+		LRK54_RS12485	0.61	+0.0
2,785,192	+		LRK54_RS12485	0.61	+0.8
2,785,193	-		LRK54_RS12485	0.61	-0.3
2,785,193	-		LRK54_RS12485	0.61	+0.5
2,785,246	+		LRK54_RS12485	0.65	+1.2
2,785,246	+		LRK54_RS12485	0.65	-0.7
2,785,246	+		LRK54_RS12485	0.65	-2.7
2,785,246	+		LRK54_RS12485	0.65	-2.8
2,785,246	+		LRK54_RS12485	0.65	+0.2
2,785,246	+		LRK54_RS12485	0.65	-0.8
2,785,246	+		LRK54_RS12485	0.65	-0.9
2,785,246	+		LRK54_RS12485	0.65	-1.1
2,785,246	+		LRK54_RS12485	0.65	+0.9
2,785,247	-		LRK54_RS12485	0.65	+0.2
2,785,247	-		LRK54_RS12485	0.65	-0.2
2,785,247	-		LRK54_RS12485	0.65	-2.1
2,785,247	-		LRK54_RS12485	0.65	-0.3
2,785,247	-		LRK54_RS12485	0.65	+2.1
2,785,247	-		LRK54_RS12485	0.65	+0.3
2,785,247	-		LRK54_RS12485	0.65	+0.1
2,785,247	-		LRK54_RS12485	0.65	-0.9
2,785,247	-		LRK54_RS12485	0.65	+0.3
2,785,247	-		LRK54_RS12485	0.65	-0.6
2,785,546	+		LRK54_RS12485	0.84	-1.8
2,785,546	+		LRK54_RS12485	0.84	+0.5
2,785,546	+		LRK54_RS12485	0.84	-0.8
2,785,546	+		LRK54_RS12485	0.84	-0.7
2,785,702	+				-0.1
2,785,702	+				+0.2
2,785,703	-				-0.3
2,785,703	-				+0.6
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2,785,908	+		LRK54_RS12490	0.12	-0.2
2,785,908	+		LRK54_RS12490	0.12	+0.6
2,785,908	+		LRK54_RS12490	0.12	-0.8
2,785,908	+		LRK54_RS12490	0.12	-0.2
2,785,908	+		LRK54_RS12490	0.12	-1.1
2,785,908	+		LRK54_RS12490	0.12	-1.5
2,785,908	+		LRK54_RS12490	0.12	+0.0
2,785,908	+		LRK54_RS12490	0.12	-0.6
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2,785,908	+		LRK54_RS12490	0.12	-0.2
2,785,908	+		LRK54_RS12490	0.12	+0.4
2,785,908	+		LRK54_RS12490	0.12	+2.7
2,785,909	-		LRK54_RS12490	0.12	+1.1
2,785,909	-		LRK54_RS12490	0.12	-1.7
2,785,909	-		LRK54_RS12490	0.12	+0.3
2,785,909	-		LRK54_RS12490	0.12	-1.3
2,785,909	-		LRK54_RS12490	0.12	+1.1
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2,785,909	-		LRK54_RS12490	0.12	-1.4
2,785,909	-		LRK54_RS12490	0.12	-0.8
2,785,909	-		LRK54_RS12490	0.12	-1.0
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2,785,909	-		LRK54_RS12490	0.12	-0.2
2,786,307	+		LRK54_RS12490	0.48	-1.1
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2,786,308	-		LRK54_RS12490	0.48	-0.4
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2,786,454	+		LRK54_RS12490	0.61	-0.7
2,786,455	-		LRK54_RS12490	0.61	+2.2
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2,786,463	+		LRK54_RS12490	0.62	+0.9
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2,786,464	-		LRK54_RS12490	0.62	+1.8
2,786,464	-		LRK54_RS12490	0.62	+0.6
2,786,652	+		LRK54_RS12490	0.79	+1.1
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2,786,652	+		LRK54_RS12490	0.79	-1.3
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2,786,652	+		LRK54_RS12490	0.79	+1.1
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2,786,653	-		LRK54_RS12490	0.79	-0.6
2,786,653	-		LRK54_RS12490	0.79	+0.3
2,786,760	+		LRK54_RS12490	0.88	-0.2
2,786,760	+		LRK54_RS12490	0.88	+1.5
2,786,760	+		LRK54_RS12490	0.88	+1.3
2,786,760	+		LRK54_RS12490	0.88	-1.2
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2,786,761	-		LRK54_RS12490	0.88	-0.2
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2,786,761	-		LRK54_RS12490	0.88	+0.3
2,786,761	-		LRK54_RS12490	0.88	+0.6
2,786,761	-		LRK54_RS12490	0.88	+0.9