Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05410

Experiment: biofilm; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM;
1,165,644	+		LRK54_RS05405	0.63	-1.1
1,165,644	+		LRK54_RS05405	0.63	-0.5
1,165,644	+		LRK54_RS05405	0.63	-0.3
1,165,644	+		LRK54_RS05405	0.63	-1.1
1,165,644	+		LRK54_RS05405	0.63	-0.1
1,165,644	+		LRK54_RS05405	0.63	-1.2
1,165,644	+		LRK54_RS05405	0.63	-0.4
1,165,644	+		LRK54_RS05405	0.63	-1.7
1,165,644	+		LRK54_RS05405	0.63	-1.5
1,165,644	+		LRK54_RS05405	0.63	-0.7
1,165,644	+		LRK54_RS05405	0.63	+1.1
1,165,644	+		LRK54_RS05405	0.63	-1.8
1,165,644	+		LRK54_RS05405	0.63	-0.4
1,165,644	+		LRK54_RS05405	0.63	+0.1
1,165,644	+		LRK54_RS05405	0.63	-2.1
1,165,644	+		LRK54_RS05405	0.63	+1.6
1,165,644	+		LRK54_RS05405	0.63	+0.7
1,165,644	+		LRK54_RS05405	0.63	+0.8
1,165,644	+		LRK54_RS05405	0.63	+0.5
1,165,644	+		LRK54_RS05405	0.63	-0.3
1,165,644	+		LRK54_RS05405	0.63	-0.2
1,165,645	-		LRK54_RS05405	0.63	-2.1
1,165,645	-		LRK54_RS05405	0.63	+1.0
1,165,645	-		LRK54_RS05405	0.63	+0.5
1,165,645	-		LRK54_RS05405	0.63	-0.5
1,165,645	-		LRK54_RS05405	0.63	-0.2
1,165,645	-		LRK54_RS05405	0.63	+1.2
1,165,645	-		LRK54_RS05405	0.63	+3.2
1,165,645	-		LRK54_RS05405	0.63	-1.4
1,165,645	-		LRK54_RS05405	0.63	-1.3
1,165,645	-		LRK54_RS05405	0.63	-1.7
1,165,645	-		LRK54_RS05405	0.63	-1.0
1,165,645	-		LRK54_RS05405	0.63	-0.9
1,165,645	-		LRK54_RS05405	0.63	-0.1
1,165,645	-		LRK54_RS05405	0.63	+0.8
1,165,645	-		LRK54_RS05405	0.63	+0.3
1,165,645	-		LRK54_RS05405	0.63	+0.4
1,165,645	-		LRK54_RS05405	0.63	+0.4
1,165,645	-		LRK54_RS05405	0.63	-0.5
1,165,645	-		LRK54_RS05405	0.63	-0.2
1,165,645	-		LRK54_RS05405	0.63	-1.0
1,165,645	-		LRK54_RS05405	0.63	-0.4
1,165,645	-		LRK54_RS05405	0.63	-0.1
1,165,645	-		LRK54_RS05405	0.63	-0.3
1,165,645	-		LRK54_RS05405	0.63	+0.3
1,165,645	-		LRK54_RS05405	0.63	-0.1
1,165,645	-		LRK54_RS05405	0.63	-0.1
1,165,645	-		LRK54_RS05405	0.63	-0.2
1,165,645	-		LRK54_RS05405	0.63	+1.4
1,165,645	-		LRK54_RS05405	0.63	-0.6
1,165,645	-		LRK54_RS05405	0.63	+1.2
1,165,645	-		LRK54_RS05405	0.63	+0.6
1,165,645	-		LRK54_RS05405	0.63	-1.4
1,165,645	-		LRK54_RS05405	0.63	-0.9
1,165,645	-		LRK54_RS05405	0.63	+0.1
1,165,695	+		LRK54_RS05405	0.65	-0.4
1,165,695	+		LRK54_RS05405	0.65	-0.6
1,165,695	+		LRK54_RS05405	0.65	-0.3
1,165,695	+		LRK54_RS05405	0.65	-1.0
1,165,695	+		LRK54_RS05405	0.65	+1.6
1,165,695	+		LRK54_RS05405	0.65	+0.3
1,165,695	+		LRK54_RS05405	0.65	-1.1
1,165,695	+		LRK54_RS05405	0.65	-1.6
1,165,695	+		LRK54_RS05405	0.65	-1.1
1,165,695	+		LRK54_RS05405	0.65	+0.7
1,165,695	+		LRK54_RS05405	0.65	-1.9
1,165,695	+		LRK54_RS05405	0.65	+3.2
1,165,696	-		LRK54_RS05405	0.65	+0.7
1,165,696	-		LRK54_RS05405	0.65	-1.2
1,165,696	-		LRK54_RS05405	0.65	+0.7
1,165,696	-		LRK54_RS05405	0.65	-1.2
1,165,696	-		LRK54_RS05405	0.65	+1.9
1,165,696	-		LRK54_RS05405	0.65	+1.4
1,165,696	-		LRK54_RS05405	0.65	+0.5
1,165,696	-		LRK54_RS05405	0.65	+2.6
1,165,696	-		LRK54_RS05405	0.65	-0.8
1,165,696	-		LRK54_RS05405	0.65	-0.6
1,165,696	-		LRK54_RS05405	0.65	-2.7
1,165,696	-		LRK54_RS05405	0.65	-0.6
1,165,696	-		LRK54_RS05405	0.65	+0.2
1,165,696	-		LRK54_RS05405	0.65	-0.7
1,165,696	-		LRK54_RS05405	0.65	+1.2
1,165,800	+		LRK54_RS05405	0.70	-0.1
1,165,857	+		LRK54_RS05405	0.72	-0.9
1,165,857	+		LRK54_RS05405	0.72	+0.4
1,165,857	+		LRK54_RS05405	0.72	+0.4
1,165,857	+		LRK54_RS05405	0.72	+0.9
1,165,857	+		LRK54_RS05405	0.72	+2.0
1,165,857	+		LRK54_RS05405	0.72	-0.1
1,165,857	+		LRK54_RS05405	0.72	+0.6
1,165,857	+		LRK54_RS05405	0.72	+2.9
1,165,857	+		LRK54_RS05405	0.72	+0.7
1,165,857	+		LRK54_RS05405	0.72	+0.3
1,165,857	+		LRK54_RS05405	0.72	-1.2
1,165,857	+		LRK54_RS05405	0.72	-0.5
1,165,857	+		LRK54_RS05405	0.72	+0.9
1,165,857	+		LRK54_RS05405	0.72	+0.1
1,165,857	+		LRK54_RS05405	0.72	-0.5
1,165,857	+		LRK54_RS05405	0.72	-1.1
1,165,857	+		LRK54_RS05405	0.72	-0.6
1,165,857	+		LRK54_RS05405	0.72	-0.7
1,165,857	+		LRK54_RS05405	0.72	-0.1
1,165,857	+		LRK54_RS05405	0.72	+2.4
1,165,858	-		LRK54_RS05405	0.72	+2.2
1,165,858	-		LRK54_RS05405	0.72	-0.2
1,165,858	-		LRK54_RS05405	0.72	-1.6
1,165,858	-		LRK54_RS05405	0.72	-1.3
1,165,858	-		LRK54_RS05405	0.72	+1.0
1,165,858	-		LRK54_RS05405	0.72	-1.2
1,165,884	+		LRK54_RS05405	0.73	-0.5
1,165,884	+		LRK54_RS05405	0.73	-0.9
1,165,884	+		LRK54_RS05405	0.73	+0.3
1,165,884	+		LRK54_RS05405	0.73	-0.9
1,165,885	-		LRK54_RS05405	0.73	+2.1
1,165,885	-		LRK54_RS05405	0.73	+3.2
1,165,885	-		LRK54_RS05405	0.73	-0.7
1,165,885	-		LRK54_RS05405	0.73	-1.0
1,166,013	+		LRK54_RS05405	0.78	-0.0
1,166,013	+		LRK54_RS05405	0.78	-1.3
1,166,013	+		LRK54_RS05405	0.78	+0.8
1,166,014	-		LRK54_RS05405	0.78	+1.4
1,166,014	-		LRK54_RS05405	0.78	-0.7
1,166,014	-		LRK54_RS05405	0.78	+1.0
1,166,014	-		LRK54_RS05405	0.78	-0.3
1,166,487	+				+0.6
1,166,488	-				-0.6
1,166,488	-				-0.1
1,166,488	-				-0.4
1,166,531	+				-0.4
1,166,531	+				-3.2
1,166,531	+				-1.2
1,166,531	+				-1.7
1,166,531	+				+4.2
1,166,531	+				-0.7
1,166,531	+				-1.0
1,166,532	-				-1.9
1,166,532	-				-0.5
1,166,532	-				-0.6
1,166,532	-				-1.5
1,166,532	-				-0.2
1,166,532	-				-1.6
1,166,820	+		LRK54_RS05410	0.29	-1.4
1,166,820	+		LRK54_RS05410	0.29	+1.2
1,166,956	-		LRK54_RS05410	0.44	+0.8
1,166,956	-		LRK54_RS05410	0.44	-2.5
1,166,956	-		LRK54_RS05410	0.44	+1.3
1,166,956	-		LRK54_RS05410	0.44	+1.7
1,166,956	-		LRK54_RS05410	0.44	-0.9
1,166,985	+		LRK54_RS05410	0.47	-1.5
1,166,985	+		LRK54_RS05410	0.47	-1.4
1,166,985	+		LRK54_RS05410	0.47	+0.2
1,166,985	+		LRK54_RS05410	0.47	-2.0
1,166,985	+		LRK54_RS05410	0.47	-0.8
1,166,985	+		LRK54_RS05410	0.47	+0.1
1,166,985	+		LRK54_RS05410	0.47	-0.2
1,166,985	+		LRK54_RS05410	0.47	-0.7
1,166,985	+		LRK54_RS05410	0.47	-0.5
1,166,985	+		LRK54_RS05410	0.47	+1.4
1,166,986	-		LRK54_RS05410	0.47	-0.2
1,166,986	-		LRK54_RS05410	0.47	+0.4
1,166,986	-		LRK54_RS05410	0.47	-2.0
1,166,986	-		LRK54_RS05410	0.47	-1.8
1,166,986	-		LRK54_RS05410	0.47	-0.5
1,166,986	-		LRK54_RS05410	0.47	-0.5
1,166,986	-		LRK54_RS05410	0.47	-2.8
1,166,986	-		LRK54_RS05410	0.47	-2.0
1,167,219	+		LRK54_RS05410	0.72	-1.3
1,167,219	+		LRK54_RS05410	0.72	-1.3
1,167,219	+		LRK54_RS05410	0.72	-1.0
1,167,220	-		LRK54_RS05410	0.73	-2.1
1,167,483	-				+1.6
1,167,483	-				+0.6
1,167,569	+				+0.9
1,167,569	+				+0.6
1,167,569	+				-1.5
1,167,569	+				-0.5
1,167,569	+				+0.6
1,167,569	+				-0.4
1,167,570	-				-1.4
1,167,570	-				-0.8
1,167,570	-				+0.5
1,167,570	-				-0.1
1,167,570	-				-0.3
1,167,570	-				-1.4
1,167,570	-				-0.4
1,167,570	-				-0.6
1,167,570	-				-0.6
1,167,570	-				-2.1
1,167,570	-				+1.1
1,167,590	+				+0.1
1,167,595	+				-0.4
1,167,595	+				-0.1
1,167,595	+				-0.6
1,167,595	+				-1.0
1,167,595	+				-0.1
1,167,595	+				-1.9
1,167,596	-				+0.0
1,167,596	-				-1.7
1,167,596	-				+0.5
1,167,596	-				+2.6
1,167,596	-				-0.9
1,167,596	-				-0.3
1,167,596	-				+1.2
1,167,613	+				+0.7
1,167,613	+				-2.1
1,167,613	+				+3.2
1,167,613	+				-0.5
1,167,614	-				+0.3
1,167,614	-				-0.9
1,167,614	-				-0.5
1,167,749	+		LRK54_RS05415	0.25	+0.2
1,167,749	+		LRK54_RS05415	0.25	-0.1
1,167,749	+		LRK54_RS05415	0.25	+0.0
1,167,749	+		LRK54_RS05415	0.25	+0.7
1,167,750	-		LRK54_RS05415	0.26	+1.6
1,167,750	-		LRK54_RS05415	0.26	+0.6
1,167,809	+		LRK54_RS05415	0.36	-0.1
1,167,809	+		LRK54_RS05415	0.36	+0.9
1,167,810	-		LRK54_RS05415	0.36	-0.3
1,167,915	+		LRK54_RS05415	0.54	+0.0
1,167,915	+		LRK54_RS05415	0.54	+1.0
1,167,915	+		LRK54_RS05415	0.54	+0.3
1,167,915	+		LRK54_RS05415	0.54	+1.4
1,167,916	-		LRK54_RS05415	0.54	+1.9
1,167,916	-		LRK54_RS05415	0.54	+1.9
1,167,916	-		LRK54_RS05415	0.54	+1.0
1,167,916	-		LRK54_RS05415	0.54	+2.2
1,167,916	-		LRK54_RS05415	0.54	+1.6
1,167,916	-		LRK54_RS05415	0.54	-0.1
1,167,916	-		LRK54_RS05415	0.54	+1.4
1,167,916	-		LRK54_RS05415	0.54	+0.4
1,167,916	-		LRK54_RS05415	0.54	+0.9
1,167,917	+		LRK54_RS05415	0.54	+0.7
1,167,917	+		LRK54_RS05415	0.54	+0.5
1,167,917	+		LRK54_RS05415	0.54	+1.0
1,167,917	+		LRK54_RS05415	0.54	+0.7
1,167,917	+		LRK54_RS05415	0.54	+0.1
1,167,917	+		LRK54_RS05415	0.54	+0.5
1,167,917	+		LRK54_RS05415	0.54	+0.9
1,167,917	+		LRK54_RS05415	0.54	+1.9
1,167,917	+		LRK54_RS05415	0.54	+0.4
1,167,917	+		LRK54_RS05415	0.54	-0.8
1,167,917	+		LRK54_RS05415	0.54	+1.6
1,167,917	+		LRK54_RS05415	0.54	+1.2
1,167,917	+		LRK54_RS05415	0.54	+1.2
1,167,917	+				+1.0
1,167,917	+		LRK54_RS05415	0.54	+0.0
1,167,918	-		LRK54_RS05415	0.55	+3.2
1,167,918	-		LRK54_RS05415	0.55	+0.4
1,167,918	-		LRK54_RS05415	0.55	-0.1
1,167,918	-		LRK54_RS05415	0.55	+0.9
1,167,918	-		LRK54_RS05415	0.55	+1.2
1,167,918	-		LRK54_RS05415	0.55	-0.5
1,167,918	-		LRK54_RS05415	0.55	+2.2
1,167,918	-		LRK54_RS05415	0.55	-0.7
1,167,918	-		LRK54_RS05415	0.55	+1.9
1,167,918	-		LRK54_RS05415	0.55	+2.6
1,167,918	-		LRK54_RS05415	0.55	-1.0
1,167,918	-		LRK54_RS05415	0.55	+0.9
1,167,918	-		LRK54_RS05415	0.55	+1.6
1,167,918	-		LRK54_RS05415	0.55	+1.2
1,167,918	-		LRK54_RS05415	0.55	+1.4
1,167,918	-		LRK54_RS05415	0.55	+1.0
1,167,918	-		LRK54_RS05415	0.55	+0.0
1,167,918	-		LRK54_RS05415	0.55	-0.2
1,167,918	-		LRK54_RS05415	0.55	+2.6
1,167,918	-		LRK54_RS05415	0.55	+4.2
1,167,918	-		LRK54_RS05415	0.55	+1.9
1,167,918	-		LRK54_RS05415	0.55	-0.3
1,167,976	-		LRK54_RS05415	0.65	+1.0
1,168,010	+		LRK54_RS05415	0.70	+0.5
1,168,011	-		LRK54_RS05415	0.71	+0.4
1,168,064	+		LRK54_RS05415	0.80	+0.5
1,168,064	+		LRK54_RS05415	0.80	+1.4
1,168,064	+		LRK54_RS05415	0.80	+0.5
1,168,064	+		LRK54_RS05415	0.80	+2.2
1,168,064	+		LRK54_RS05415	0.80	+2.6
1,168,064	+		LRK54_RS05415	0.80	-0.1
1,168,064	+		LRK54_RS05415	0.80	+1.9
1,168,064	+		LRK54_RS05415	0.80	+0.3
1,168,064	+		LRK54_RS05415	0.80	+1.4
1,168,064	+		LRK54_RS05415	0.80	+1.4
1,168,064	+		LRK54_RS05415	0.80	-0.9
1,168,064	+		LRK54_RS05415	0.80	+0.9
1,168,064	+		LRK54_RS05415	0.80	+0.4
1,168,064	+		LRK54_RS05415	0.80	+1.2
1,168,065	-		LRK54_RS05415	0.80	+0.7
1,168,065	-		LRK54_RS05415	0.80	+0.4
1,168,065	-		LRK54_RS05415	0.80	+3.2
1,168,065	-		LRK54_RS05415	0.80	+0.6
1,168,065	-				+2.6
1,168,065	-		LRK54_RS05415	0.80	+0.6
1,168,065	-		LRK54_RS05415	0.80	+1.4
1,168,065	-		LRK54_RS05415	0.80	+1.6
1,168,073	+		LRK54_RS05415	0.81	+1.9
1,168,073	+		LRK54_RS05415	0.81	-0.6
1,168,073	+		LRK54_RS05415	0.81	+0.9
1,168,073	+		LRK54_RS05415	0.81	+0.0
1,168,073	+		LRK54_RS05415	0.81	+0.7
1,168,073	+		LRK54_RS05415	0.81	+0.9
1,168,074	-		LRK54_RS05415	0.82	+0.9
1,168,074	-		LRK54_RS05415	0.82	+1.4
1,168,074	-		LRK54_RS05415	0.82	-0.7
1,168,074	-		LRK54_RS05415	0.82	+0.4
1,168,074	-		LRK54_RS05415	0.82	-1.1
1,168,074	-		LRK54_RS05415	0.82	+0.6
1,168,142	+				-0.1
1,168,142	+				+0.6
1,168,143	-				+0.5
1,168,143	-				-0.9
1,168,143	-				+0.6
1,168,143	-				+4.2
1,168,185	-				+0.7
1,168,248	+				-1.9
1,168,248	+				-0.2
1,168,248	+				+1.5
1,168,249	-				-0.3
1,168,265	+				-3.0
1,168,266	-				-1.1
1,168,267	-				+0.3
1,168,407	+				-0.5
1,168,408	-				-1.4
1,168,408	-				+1.4
1,168,408	-				+1.2
1,168,408	-				+1.9
1,168,408	-				-0.3
1,168,408	-				-2.5
1,168,408	-				+0.2