Experiment: biofilm; Day2; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00400 and LRK54_RS00405 are separated by 67 nucleotides LRK54_RS00405 and LRK54_RS00410 are separated by 156 nucleotides LRK54_RS00410 and LRK54_RS00415 are separated by 107 nucleotides LRK54_RS00415 and LRK54_RS00420 are separated by 113 nucleotides
LRK54_RS00400: LRK54_RS00400 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 87,223 to 88,311
_RS00400
LRK54_RS00405: LRK54_RS00405 - FHA domain-containing protein, at 88,379 to 89,140
_RS00405
LRK54_RS00410: LRK54_RS00410 - polyhydroxyalkanoic acid system family protein, at 89,297 to 89,572
_RS00410
LRK54_RS00415: LRK54_RS00415 - translation initiation factor IF-1, at 89,680 to 89,898
_RS00415
LRK54_RS00420: LRK54_RS00420 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 90,012 to 92,282
_RS00420
Position (kb) 89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 88.347 kb on + strand at 88.347 kb on + strand at 88.348 kb on - strand at 88.348 kb on - strand at 88.348 kb on - strand at 88.767 kb on - strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.953 kb on + strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 88.954 kb on - strand, within LRK54_RS00405 at 89.012 kb on - strand, within LRK54_RS00405 at 89.071 kb on + strand at 89.071 kb on + strand at 89.134 kb on + strand at 89.135 kb on - strand at 89.135 kb on - strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.171 kb on + strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.172 kb on - strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.267 kb on + strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.268 kb on - strand at 89.282 kb on - strand at 89.282 kb on - strand at 89.282 kb on - strand at 89.355 kb on + strand, within LRK54_RS00410 at 89.355 kb on + strand, within LRK54_RS00410 at 89.356 kb on - strand, within LRK54_RS00410 at 89.356 kb on - strand, within LRK54_RS00410 at 89.607 kb on + strand at 89.896 kb on + strand at 89.896 kb on + strand at 89.896 kb on + strand at 89.896 kb on + strand at 89.896 kb on + strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 89.897 kb on - strand at 90.000 kb on - strand at 90.000 kb on - strand at 90.014 kb on - strand at 90.246 kb on + strand, within LRK54_RS00420 at 90.247 kb on - strand, within LRK54_RS00420 at 90.247 kb on - strand, within LRK54_RS00420 at 90.247 kb on - strand, within LRK54_RS00420
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; remove 88,347 + +0.4 88,347 + -0.2 88,348 - -0.4 88,348 - +1.1 88,348 - +0.2 88,767 - LRK54_RS00405 0.51 +1.2 88,953 + LRK54_RS00405 0.75 +0.1 88,953 + LRK54_RS00405 0.75 +0.4 88,953 + LRK54_RS00405 0.75 +1.0 88,953 + LRK54_RS00405 0.75 +0.5 88,953 + LRK54_RS00405 0.75 +0.3 88,953 + LRK54_RS00405 0.75 +0.8 88,953 + LRK54_RS00405 0.75 +0.3 88,953 + LRK54_RS00405 0.75 +1.0 88,953 + LRK54_RS00405 0.75 -0.1 88,953 + LRK54_RS00405 0.75 +0.9 88,953 + LRK54_RS00405 0.75 +0.6 88,953 + LRK54_RS00405 0.75 +0.0 88,953 + LRK54_RS00405 0.75 +1.2 88,953 + LRK54_RS00405 0.75 +0.3 88,953 + LRK54_RS00405 0.75 +1.0 88,953 + LRK54_RS00405 0.75 -0.4 88,954 - LRK54_RS00405 0.75 -0.5 88,954 - LRK54_RS00405 0.75 -0.0 88,954 - LRK54_RS00405 0.75 +2.4 88,954 - LRK54_RS00405 0.75 -1.4 88,954 - +2.2 88,954 - LRK54_RS00405 0.75 -0.6 88,954 - LRK54_RS00405 0.75 -1.3 88,954 - LRK54_RS00405 0.75 +1.0 88,954 - LRK54_RS00405 0.75 +0.5 88,954 - LRK54_RS00405 0.75 -0.2 88,954 - LRK54_RS00405 0.75 +0.7 88,954 - LRK54_RS00405 0.75 +3.2 88,954 - LRK54_RS00405 0.75 -1.0 88,954 - LRK54_RS00405 0.75 +1.2 88,954 - LRK54_RS00405 0.75 +1.6 88,954 - LRK54_RS00405 0.75 -0.3 88,954 - LRK54_RS00405 0.75 +1.2 88,954 - LRK54_RS00405 0.75 -0.4 88,954 - LRK54_RS00405 0.75 +1.2 88,954 - LRK54_RS00405 0.75 -1.6 88,954 - LRK54_RS00405 0.75 +0.0 89,012 - LRK54_RS00405 0.83 +0.9 89,071 + +0.6 89,071 + +0.2 89,134 + +1.0 89,135 - +2.2 89,135 - +0.8 89,171 + +1.9 89,171 + -0.8 89,171 + +0.2 89,171 + +0.2 89,171 + -0.9 89,171 + +0.0 89,171 + -1.0 89,171 + -0.3 89,171 + +1.9 89,171 + -0.9 89,171 + +0.8 89,171 + +0.1 89,172 - +0.1 89,172 - +2.0 89,172 - +1.4 89,172 - +0.5 89,172 - +0.7 89,172 - +0.3 89,172 - +0.7 89,172 - -1.2 89,172 - +2.4 89,172 - -0.7 89,172 - +0.1 89,172 - +3.2 89,172 - -1.2 89,172 - +1.0 89,172 - +1.1 89,172 - -0.4 89,172 - -0.6 89,172 - -0.7 89,172 - +1.5 89,172 - -0.1 89,172 - -1.5 89,172 - -0.2 89,267 + -1.7 89,267 + -0.4 89,267 + +1.9 89,267 + +0.3 89,267 + -0.4 89,267 + -1.1 89,267 + +1.4 89,267 + -2.9 89,267 + -1.1 89,267 + +1.0 89,267 + -1.8 89,267 + +0.4 89,267 + +1.0 89,267 + +0.1 89,267 + -0.8 89,267 + -1.5 89,267 + -1.1 89,268 - +1.2 89,268 - +0.2 89,268 - +0.5 89,268 - -0.5 89,268 - -1.7 89,268 - -0.6 89,268 - -0.0 89,268 - -0.4 89,268 - -0.7 89,268 - -1.9 89,268 - -0.8 89,268 - -0.2 89,268 - -0.1 89,268 - -0.5 89,268 - +1.0 89,268 - +0.1 89,268 - -1.3 89,268 - -0.3 89,268 - +0.3 89,268 - -0.0 89,268 - -0.0 89,282 - +0.6 89,282 - -0.4 89,282 - -0.4 89,355 + LRK54_RS00410 0.21 -0.2 89,355 + LRK54_RS00410 0.21 -1.6 89,356 - LRK54_RS00410 0.21 -2.5 89,356 - LRK54_RS00410 0.21 -0.5 89,607 + +0.2 89,896 + -0.3 89,896 + +3.6 89,896 + -0.4 89,896 + +0.9 89,896 + +0.6 89,897 - -0.1 89,897 - +1.2 89,897 - +0.4 89,897 - +1.0 89,897 - -0.6 89,897 - -0.6 89,897 - +0.1 89,897 - +0.6 89,897 - -1.1 89,897 - -0.0 89,897 - +1.1 90,000 - +0.2 90,000 - -1.3 90,014 - -1.3 90,246 + LRK54_RS00420 0.10 -0.1 90,247 - LRK54_RS00420 0.10 -0.6 90,247 - LRK54_RS00420 0.10 +0.1 90,247 - LRK54_RS00420 0.10 +1.9
Or see this region's nucleotide sequence