Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14245

Experiment: biofilm; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM;
3,173,515	+		LRK54_RS14235	0.69	-1.2
3,173,516	-		LRK54_RS14235	0.69	-1.0
3,173,516	-		LRK54_RS14235	0.69	-2.5
3,173,545	+		LRK54_RS14235	0.70	-1.2
3,173,545	+		LRK54_RS14235	0.70	-1.4
3,173,545	+		LRK54_RS14235	0.70	-1.4
3,173,545	+		LRK54_RS14235	0.70	+0.4
3,173,546	-		LRK54_RS14235	0.70	-1.4
3,173,546	-		LRK54_RS14235	0.70	+1.7
3,173,546	-		LRK54_RS14235	0.70	+0.5
3,173,779	+		LRK54_RS14235	0.82	-0.5
3,173,779	+		LRK54_RS14235	0.82	-1.0
3,173,780	-		LRK54_RS14235	0.82	+0.5
3,173,780	-		LRK54_RS14235	0.82	-1.9
3,174,001	+				+1.4
3,174,061	+				-0.0
3,174,061	+				-2.1
3,174,061	+				+2.2
3,174,061	+				-1.2
3,174,061	+				+0.9
3,174,061	+				-2.3
3,174,061	+				-1.4
3,174,061	+				-0.1
3,174,061	+				+0.3
3,174,061	+				-0.4
3,174,061	+				-1.6
3,174,061	+				-2.0
3,174,061	+				-0.4
3,174,061	+				-0.5
3,174,061	+				-0.3
3,174,061	+				+0.0
3,174,061	+				+0.3
3,174,062	-				-0.5
3,174,062	-				+0.0
3,174,062	-				-0.2
3,174,062	-				+0.6
3,174,062	-				-1.2
3,174,062	-				-0.0
3,174,062	-				+0.5
3,174,062	-				+2.3
3,174,062	-				-0.6
3,174,062	-				-1.4
3,174,062	-				+0.3
3,174,062	-				-1.4
3,174,062	-				+0.0
3,174,062	-				-0.9
3,174,062	-				-1.4
3,174,062	-				+0.5
3,174,174	-				-0.3
3,174,233	+				+0.1
3,174,312	+				-2.2
3,174,312	+				-0.8
3,174,312	+				+0.2
3,174,312	+				-0.7
3,174,312	+				-0.7
3,174,312	+				-1.5
3,174,312	+				-0.1
3,174,312	+				-0.0
3,174,312	+				-2.6
3,174,313	-				+0.0
3,174,313	-				-1.0
3,174,313	-				-1.6
3,174,313	-				-0.2
3,174,313	-				-1.1
3,174,313	-				-1.8
3,174,313	-				+0.3
3,174,313	-				-1.0
3,174,313	-				-1.5
3,174,313	-				-1.0
3,174,313	-				+0.9
3,174,313	-				-0.3
3,174,313	-				-1.2
3,174,313	-				-2.6
3,174,314	+				+0.5
3,174,314	+				-0.1
3,174,314	+				-2.2
3,174,314	+				-1.6
3,174,314	+				-0.6
3,174,314	+				-0.7
3,174,314	+				+0.4
3,174,314	+				+1.0
3,174,314	+				-1.2
3,174,314	+				+0.1
3,174,314	+				-1.9
3,174,314	+				-2.3
3,174,314	+				-1.4
3,174,314	+				-1.5
3,174,314	+				-1.9
3,174,314	+				+0.6
3,174,314	+				+0.1
3,174,314	+				-0.5
3,174,314	+				-1.6
3,174,314	+				-2.7
3,174,314	+				+1.9
3,174,314	+				-0.1
3,174,314	+				+1.4
3,174,314	+				-2.5
3,174,315	-				-1.5
3,174,315	-				-1.5
3,174,315	-				-2.9
3,174,315	-				-1.3
3,174,315	-				-1.9
3,174,315	-				-0.1
3,174,315	-				-2.4
3,174,315	-				-0.6
3,174,315	-				-2.7
3,174,315	-				-0.0
3,174,315	-				+2.3
3,174,315	-				-0.5
3,174,315	-				+1.7
3,174,325	+				+1.1
3,174,325	+				-1.2
3,174,325	+				-0.4
3,174,325	+				-1.2
3,174,326	-				-1.0
3,174,326	-				+2.0
3,174,326	-				-0.4
3,174,326	-				+1.6
3,174,326	-				-1.1
3,174,326	-				-1.2
3,174,386	+				-1.2
3,174,388	+				+2.3
3,174,388	+				-0.5
3,174,388	+				-1.2
3,174,388	+				-1.1
3,174,388	+				-1.8
3,174,388	+				+1.1
3,174,388	+				-0.2
3,174,388	+				+0.4
3,174,388	+				-2.2
3,174,388	+				-1.5
3,174,388	+				-0.0
3,174,388	+				-1.6
3,174,388	+				-2.1
3,174,388	+				-0.5
3,174,388	+				-0.8
3,174,388	+				-0.5
3,174,388	+				-1.9
3,174,388	+				+0.5
3,174,388	+				-0.6
3,174,388	+				-1.7
3,174,388	+				-0.4
3,174,388	+				+1.7
3,174,388	+				-1.5
3,174,388	+				-0.4
3,174,388	+				-0.2
3,174,388	+				-0.3
3,174,388	+				-1.5
3,174,388	+				-0.5
3,174,388	+				-0.3
3,174,388	+				+0.5
3,174,388	+				-0.8
3,174,388	+				-0.3
3,174,388	+				+1.6
3,174,389	-				-0.3
3,174,389	-				+0.3
3,174,389	-				-0.2
3,174,389	-				-0.2
3,174,389	-				+1.2
3,174,389	-				-0.2
3,174,389	-				-0.4
3,174,389	-				+0.9
3,174,389	-				+0.2
3,174,389	-				-0.8
3,174,389	-				-0.9
3,174,389	-				-0.7
3,174,389	-				-1.0
3,174,389	-				+0.1
3,174,389	-				-1.0
3,174,389	-				-0.3
3,174,389	-				-1.7
3,174,389	-				+1.3
3,174,389	-				-0.8
3,174,389	-				-0.1
3,174,389	-				+1.6
3,174,389	-				-0.3
3,174,389	-				+0.5
3,174,389	-				+0.1
3,174,389	-				-0.5
3,174,389	-				-0.7
3,174,389	-				+0.1
3,174,389	-				-2.0
3,174,389	-				-0.4
3,174,389	-				-0.3
3,174,389	-				-1.0
3,174,389	-				+1.0
3,174,389	-				-0.6
3,174,389	-				-0.9
3,174,389	-				+0.6
3,174,389	-				+1.0
3,174,389	-				-0.3
3,174,389	-				+0.3
3,174,389	-				+0.0
3,174,389	-				+1.3
3,174,389	-				-1.6
3,174,390	+				+2.5
3,174,390	+				-0.6
3,174,390	+				-0.0
3,174,390	+				-1.8
3,174,390	+				+0.7
3,174,390	+				-2.4
3,174,390	+				-0.5
3,174,390	+				-1.1
3,174,390	+				+0.5
3,174,390	+				+0.5
3,174,390	+				-2.2
3,174,390	+				-0.4
3,174,390	+				-1.3
3,174,390	+				+0.1
3,174,390	+				+1.3
3,174,390	+				-0.7
3,174,390	+				+0.8
3,174,390	+				-1.5
3,174,390	+				+0.5
3,174,390	+				-1.8
3,174,390	+				-0.4
3,174,390	+				-0.1
3,174,390	+				+0.6
3,174,390	+				-0.2
3,174,390	+				-0.1
3,174,390	+				+3.3
3,174,390	+				-0.5
3,174,390	+				-2.1
3,174,390	+				-0.2
3,174,390	+				-1.0
3,174,390	+				-2.3
3,174,390	+				-1.4
3,174,390	+				-0.2
3,174,390	+				+0.0
3,174,390	+				+0.2
3,174,390	+				-0.8
3,174,390	+				+1.1
3,174,390	+				-2.3
3,174,390	+				+0.7
3,174,390	+				-0.3
3,174,390	+				-2.8
3,174,390	+				-0.2
3,174,390	+				+0.3
3,174,390	+				+0.6
3,174,391	-				-0.2
3,174,391	-				-1.7
3,174,391	-				+0.5
3,174,391	-				-1.2
3,174,391	-				-0.4
3,174,391	-				+0.5
3,174,391	-				-1.3
3,174,391	-				+1.7
3,174,391	-				-0.6
3,174,391	-				-1.1
3,174,391	-				+0.3
3,174,391	-				+0.5
3,174,391	-				-0.9
3,174,391	-				-0.9
3,174,391	-				-2.5
3,174,391	-				+1.5
3,174,391	-				-1.3
3,174,391	-				-0.6
3,174,391	-				-1.6
3,174,391	-				+0.9
3,174,391	-				+0.1
3,174,391	-				+1.5
3,174,391	-				+2.0
3,174,391	-				+0.5
3,174,391	-				+3.3
3,174,391	-				-1.2
3,174,391	-				+0.3
3,174,391	-				-0.3
3,174,391	-				+1.7
3,174,391	-				+0.8
3,174,391	-				-2.2
3,174,391	-				-0.2
3,174,391	-				+0.3
3,174,391	-				+0.3
3,174,391	-				-0.7
3,174,391	-				-1.5
3,174,391	-				+0.3
3,174,391	-				-0.2
3,174,393	-				-1.0
3,174,453	-		LRK54_RS14245	0.13	+2.0
3,174,617	+		LRK54_RS14245	0.64	+0.1
3,174,617	+		LRK54_RS14245	0.64	-0.2
3,174,617	+		LRK54_RS14245	0.64	+2.1
3,174,771	-				+1.0
3,174,771	-				+2.8
3,174,812	+				-0.3
3,174,812	+				+0.1
3,174,812	+				-0.1
3,174,812	+				+0.2
3,174,812	+				-1.2
3,174,812	+				+1.1
3,174,812	+				-2.2
3,174,813	-				+0.9
3,174,813	-				+1.7
3,174,813	-				+0.8
3,174,813	-				-0.2
3,174,813	-				-1.0
3,174,813	-				-0.0
3,174,813	-				+0.5
3,174,813	-				-0.5
3,174,821	+				+0.3
3,174,821	+				-0.8
3,174,821	+				+0.5
3,174,821	+				+1.4
3,174,822	-				+0.4
3,174,822	-				-0.2
3,174,822	-				-1.5
3,174,822	-				-0.3
3,174,822	-				-0.1
3,174,848	+		LRK54_RS14250	0.10	-1.1
3,174,848	+		LRK54_RS14250	0.10	-1.8
3,174,848	+		LRK54_RS14250	0.10	+1.0
3,174,848	+		LRK54_RS14250	0.10	+0.3
3,174,848	+		LRK54_RS14250	0.10	+0.3
3,174,848	+		LRK54_RS14250	0.10	-0.3
3,174,848	+		LRK54_RS14250	0.10	+2.1
3,174,848	+		LRK54_RS14250	0.10	-0.9
3,174,848	+		LRK54_RS14250	0.10	-1.9
3,174,848	+		LRK54_RS14250	0.10	-1.6
3,174,848	+		LRK54_RS14250	0.10	-1.8
3,174,848	+		LRK54_RS14250	0.10	+0.3
3,174,848	+		LRK54_RS14250	0.10	+0.0
3,174,848	+		LRK54_RS14250	0.10	+2.2
3,174,848	+		LRK54_RS14250	0.10	+0.7
3,174,848	+		LRK54_RS14250	0.10	+1.1
3,174,848	+		LRK54_RS14250	0.10	-1.8
3,174,848	+		LRK54_RS14250	0.10	-1.6
3,174,848	+		LRK54_RS14250	0.10	-0.3
3,174,848	+		LRK54_RS14250	0.10	-2.2
3,174,848	+		LRK54_RS14250	0.10	+1.3
3,174,848	+		LRK54_RS14250	0.10	+1.5
3,174,848	+		LRK54_RS14250	0.10	-1.7
3,174,848	+		LRK54_RS14250	0.10	+2.5
3,174,848	+		LRK54_RS14250	0.10	-0.6
3,174,848	+		LRK54_RS14250	0.10	+0.1
3,174,848	+		LRK54_RS14250	0.10	-0.2
3,174,848	+		LRK54_RS14250	0.10	-1.5
3,174,849	-		LRK54_RS14250	0.10	+1.0
3,174,849	-		LRK54_RS14250	0.10	+1.4
3,174,849	-		LRK54_RS14250	0.10	+1.3
3,174,849	-		LRK54_RS14250	0.10	+3.3
3,174,849	-		LRK54_RS14250	0.10	-0.2
3,174,849	-		LRK54_RS14250	0.10	-0.5
3,174,849	-		LRK54_RS14250	0.10	+2.5
3,174,849	-		LRK54_RS14250	0.10	+1.6
3,174,849	-		LRK54_RS14250	0.10	+0.1
3,174,849	-		LRK54_RS14250	0.10	-0.8
3,174,849	-		LRK54_RS14250	0.10	-1.3
3,174,849	-		LRK54_RS14250	0.10	-0.0
3,174,849	-		LRK54_RS14250	0.10	-0.9
3,174,849	-		LRK54_RS14250	0.10	-0.8
3,174,849	-		LRK54_RS14250	0.10	+0.5
3,174,849	-		LRK54_RS14250	0.10	-1.6
3,174,849	-		LRK54_RS14250	0.10	-1.7
3,174,849	-		LRK54_RS14250	0.10	-0.1
3,174,849	-		LRK54_RS14250	0.10	-0.7
3,174,849	-		LRK54_RS14250	0.10	+0.8
3,174,849	-		LRK54_RS14250	0.10	+1.1
3,174,849	-		LRK54_RS14250	0.10	+0.8
3,174,849	-		LRK54_RS14250	0.10	-0.7
3,174,849	-		LRK54_RS14250	0.10	+1.1
3,174,849	-		LRK54_RS14250	0.10	-3.1
3,174,849	-		LRK54_RS14250	0.10	-1.0
3,174,992	+		LRK54_RS14250	0.62	-0.2
3,174,992	+		LRK54_RS14250	0.62	+1.4
3,174,992	+		LRK54_RS14250	0.62	-0.3
3,174,992	+		LRK54_RS14250	0.62	-1.4
3,174,992	+		LRK54_RS14250	0.62	+1.9
3,174,992	+		LRK54_RS14250	0.62	-1.2
3,174,992	+		LRK54_RS14250	0.62	-1.5
3,174,993	-		LRK54_RS14250	0.62	+0.3
3,174,993	-		LRK54_RS14250	0.62	+1.6
3,174,993	-		LRK54_RS14250	0.62	-1.8
3,174,993	-		LRK54_RS14250	0.62	+0.2
3,174,993	-		LRK54_RS14250	0.62	-1.0
3,174,993	-		LRK54_RS14250	0.62	-1.7
3,174,993	-		LRK54_RS14250	0.62	-0.2
3,174,993	-		LRK54_RS14250	0.62	-0.3
3,174,993	-		LRK54_RS14250	0.62	-0.6
3,174,993	-		LRK54_RS14250	0.62	-0.3
3,174,993	-		LRK54_RS14250	0.62	-1.0
3,174,993	-		LRK54_RS14250	0.62	-0.5
3,174,993	-		LRK54_RS14250	0.62	+0.9
3,174,993	-		LRK54_RS14250	0.62	+0.5