Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13445

Experiment: biofilm; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM;
3,010,604	+		LRK54_RS13440	0.43	+0.9
3,010,604	+		LRK54_RS13440	0.43	-2.2
3,010,605	-		LRK54_RS13440	0.43	+0.5
3,010,629	+		LRK54_RS13440	0.45	-0.7
3,010,830	-		LRK54_RS13440	0.61	-1.9
3,011,540	+		LRK54_RS13445	0.21	+0.4
3,012,119	+		LRK54_RS13445	0.74	-0.1
3,012,120	-		LRK54_RS13445	0.74	+1.9
3,012,164	+		LRK54_RS13445	0.79	+0.3
3,012,164	+		LRK54_RS13445	0.79	-0.8
3,012,165	-		LRK54_RS13445	0.79	-0.4
3,012,165	-		LRK54_RS13445	0.79	-0.4
3,012,165	-		LRK54_RS13445	0.79	+0.6
3,012,165	-		LRK54_RS13445	0.79	-0.2
3,012,194	+		LRK54_RS13445	0.81	+1.0
3,012,194	+		LRK54_RS13445	0.81	-0.1
3,012,195	-		LRK54_RS13445	0.81	+1.4
3,012,195	-		LRK54_RS13445	0.81	-0.1
3,012,224	+		LRK54_RS13445	0.84	-1.0
3,012,308	+				-0.7
3,012,308	+				-0.4
3,012,566	+				-3.3
3,012,587	+				-0.5
3,012,587	+				-3.7
3,012,587	+				-2.1
3,012,588	-				+0.4
3,012,588	-				-0.3
3,012,620	+				-1.3
3,012,620	+				-0.5
3,012,620	+				+1.2
3,012,620	+				-0.5
3,012,620	+				-1.4
3,012,620	+				-1.4
3,012,620	+				-2.0
3,012,620	+				-1.7
3,012,620	+				-1.2
3,012,620	+				-1.5
3,012,620	+				-1.4
3,012,620	+				+0.7
3,012,620	+				-1.2
3,012,620	+				-0.4
3,012,620	+				-0.8
3,012,621	-				-1.5
3,012,621	-				-0.3
3,012,621	-				-2.5
3,012,621	-				-0.9
3,012,621	-				+0.1
3,012,621	-				-1.8
3,012,621	-				-1.5
3,012,621	-				-1.4
3,012,621	-				-1.0
3,012,621	-				-4.0
3,012,621	-				-0.5
3,012,621	-				-2.2
3,012,621	-				+2.3
3,012,621	-				-0.2
3,012,621	-				-0.3
3,012,621	-				+2.3
3,012,621	-				-2.3
3,012,623	+				-1.7
3,012,623	+				-0.0
3,012,623	+				-0.5
3,012,623	+				-0.8
3,012,623	+				-1.7
3,012,623	+				+0.8
3,012,623	+				+0.3
3,012,623	+				-0.0
3,012,623	+				-1.1
3,012,623	+				-0.8
3,012,623	+				-0.8
3,012,623	+				-1.4
3,012,624	-				-2.2
3,012,624	-				-2.5
3,012,624	-				+0.0
3,012,624	-				-0.2
3,012,624	-				-1.1
3,012,643	+				-1.7
3,012,643	+				+0.1
3,012,643	+				-1.4
3,012,665	+		LRK54_RS13450	0.11	-0.8
3,012,665	+		LRK54_RS13450	0.11	-1.7
3,012,666	-		LRK54_RS13450	0.11	-0.6
3,012,666	-		LRK54_RS13450	0.11	-1.0
3,012,936	+		LRK54_RS13450	0.25	-2.9
3,012,936	+		LRK54_RS13450	0.25	-1.5
3,012,936	+		LRK54_RS13450	0.25	-2.2
3,012,936	+		LRK54_RS13450	0.25	-2.3
3,012,936	+		LRK54_RS13450	0.25	-0.9
3,012,936	+		LRK54_RS13450	0.25	+2.1
3,012,936	+		LRK54_RS13450	0.25	-0.7
3,012,937	-		LRK54_RS13450	0.25	-2.6
3,012,937	-		LRK54_RS13450	0.25	-2.1
3,012,937	-		LRK54_RS13450	0.25	-1.0
3,012,937	-		LRK54_RS13450	0.25	+3.3
3,012,937	-		LRK54_RS13450	0.25	+0.2
3,012,937	-		LRK54_RS13450	0.25	-0.6
3,012,937	-		LRK54_RS13450	0.25	+1.0
3,012,937	-		LRK54_RS13450	0.25	-0.7
3,012,937	-		LRK54_RS13450	0.25	-0.5
3,012,937	-		LRK54_RS13450	0.25	-0.9
3,013,211	+		LRK54_RS13450	0.40	-3.0
3,013,211	+		LRK54_RS13450	0.40	-0.4
3,013,211	+		LRK54_RS13450	0.40	-1.5
3,013,211	+		LRK54_RS13450	0.40	+1.0
3,013,211	+		LRK54_RS13450	0.40	-1.2
3,013,211	+		LRK54_RS13450	0.40	-1.6
3,013,211	+		LRK54_RS13450	0.40	-0.8
3,013,211	+		LRK54_RS13450	0.40	-1.0
3,013,211	+		LRK54_RS13450	0.40	+1.4
3,013,211	+		LRK54_RS13450	0.40	-0.4
3,013,211	+		LRK54_RS13450	0.40	-1.1
3,013,211	+		LRK54_RS13450	0.40	+1.7
3,013,211	+		LRK54_RS13450	0.40	-0.1
3,013,212	-		LRK54_RS13450	0.40	+0.8
3,013,212	-		LRK54_RS13450	0.40	+0.1
3,013,212	-		LRK54_RS13450	0.40	-3.3
3,013,212	-		LRK54_RS13450	0.40	-0.6
3,013,212	-		LRK54_RS13450	0.40	+0.3
3,013,212	-		LRK54_RS13450	0.40	+0.7
3,013,212	-		LRK54_RS13450	0.40	-1.0
3,013,212	-		LRK54_RS13450	0.40	-0.7
3,013,212	-		LRK54_RS13450	0.40	-1.7
3,013,212	-		LRK54_RS13450	0.40	-0.0
3,013,212	-		LRK54_RS13450	0.40	-0.6
3,013,212	-		LRK54_RS13450	0.40	-1.0
3,013,212	-		LRK54_RS13450	0.40	-2.8
3,013,212	-		LRK54_RS13450	0.40	+0.1
3,013,212	-		LRK54_RS13450	0.40	+1.3
3,013,212	-		LRK54_RS13450	0.40	-1.4