Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12570

Experiment: biofilm; Day2; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM;
2,804,083	+				-0.5
2,804,083	+				+0.6
2,804,083	+				-0.7
2,804,089	+				+1.2
2,804,089	+				-0.6
2,804,134	-				-1.9
2,804,162	+				-1.9
2,804,208	+				+0.3
2,804,208	+				+0.9
2,804,209	-				-3.0
2,804,274	+				+3.3
2,804,312	+				-0.8
2,804,312	+				-2.5
2,804,312	+				+3.3
2,804,312	+				-0.3
2,804,312	+				+1.4
2,804,312	+				+0.1
2,804,312	+				-0.4
2,804,313	-				-1.6
2,804,313	-				-2.0
2,804,313	-				-0.8
2,804,313	-				+0.3
2,804,313	-				-3.1
2,804,313	-				+0.1
2,804,313	-				-0.9
2,804,313	-				-0.1
2,804,313	-				-0.2
2,804,313	-				-0.9
2,804,313	-				-1.5
2,804,338	+				+0.7
2,804,338	+				+0.7
2,804,339	-				+0.4
2,804,339	-				+0.8
2,804,390	+				+0.1
2,804,391	+				-0.4
2,804,391	+				-0.1
2,804,391	+				-0.9
2,804,391	+				+1.6
2,804,391	+				-0.4
2,804,391	+				+0.8
2,804,391	+				-0.8
2,804,391	+				-0.8
2,804,391	+				+0.1
2,804,391	+				-1.9
2,804,391	+				-0.3
2,804,392	-				-0.0
2,804,392	-				-1.6
2,804,392	-				-1.8
2,804,392	-				-0.1
2,804,392	-				+2.3
2,804,392	-				+0.7
2,804,392	-				-0.5
2,804,392	-				-0.6
2,804,392	-				+0.7
2,804,392	-				-1.6
2,804,392	-				-0.9
2,804,392	-				-1.1
2,804,392	-				-0.0
2,804,392	-				-0.4
2,804,392	-				-0.7
2,804,392	-				+1.4
2,804,392	-				+0.4
2,804,462	+		LRK54_RS12565	0.18	-0.3
2,804,462	+		LRK54_RS12565	0.18	+0.3
2,804,462	+		LRK54_RS12565	0.18	-0.2
2,804,463	-		LRK54_RS12565	0.18	+1.0
2,804,463	-		LRK54_RS12565	0.18	-0.6
2,804,463	-		LRK54_RS12565	0.18	-0.7
2,804,463	-		LRK54_RS12565	0.18	-2.1
2,804,547	-		LRK54_RS12565	0.30	+0.8
2,804,547	-		LRK54_RS12565	0.30	+0.1
2,804,547	-		LRK54_RS12565	0.30	-0.9
2,804,553	+		LRK54_RS12565	0.30	-0.9
2,804,553	+		LRK54_RS12565	0.30	-1.7
2,804,553	+		LRK54_RS12565	0.30	-0.5
2,804,553	+		LRK54_RS12565	0.30	+1.3
2,804,553	+		LRK54_RS12565	0.30	+0.1
2,804,553	+		LRK54_RS12565	0.30	-1.3
2,804,553	+		LRK54_RS12565	0.30	-0.1
2,804,553	+		LRK54_RS12565	0.30	-0.8
2,804,554	-		LRK54_RS12565	0.31	+1.2
2,804,554	-		LRK54_RS12565	0.31	-1.6
2,804,554	-		LRK54_RS12565	0.31	-0.7
2,804,571	+		LRK54_RS12565	0.33	+0.7
2,804,583	+		LRK54_RS12565	0.35	-2.1
2,804,583	+		LRK54_RS12565	0.35	-0.6
2,804,583	+		LRK54_RS12565	0.35	+0.7
2,804,584	-		LRK54_RS12565	0.35	-1.9
2,804,584	-		LRK54_RS12565	0.35	+0.5
2,804,584	-		LRK54_RS12565	0.35	-1.5
2,804,584	-		LRK54_RS12565	0.35	-1.0
2,804,610	+		LRK54_RS12565	0.38	+1.3
2,804,610	+		LRK54_RS12565	0.38	-0.0
2,804,610	+		LRK54_RS12565	0.38	+0.0
2,804,610	+		LRK54_RS12565	0.38	+0.9
2,804,611	-		LRK54_RS12565	0.39	-0.4
2,804,611	-		LRK54_RS12565	0.39	-1.2
2,804,611	-		LRK54_RS12565	0.39	-1.0
2,804,611	-		LRK54_RS12565	0.39	+2.2
2,804,611	-		LRK54_RS12565	0.39	+0.1
2,804,611	-		LRK54_RS12565	0.39	-0.1
2,804,628	-		LRK54_RS12565	0.41	-0.8
2,804,628	-		LRK54_RS12565	0.41	-1.3
2,804,634	+		LRK54_RS12565	0.42	+0.2
2,804,634	+		LRK54_RS12565	0.42	+0.2
2,804,634	+		LRK54_RS12565	0.42	-1.4
2,804,634	+		LRK54_RS12565	0.42	-1.1
2,804,634	+		LRK54_RS12565	0.42	-0.5
2,804,634	+		LRK54_RS12565	0.42	-0.6
2,804,634	+		LRK54_RS12565	0.42	+0.5
2,804,634	+		LRK54_RS12565	0.42	-0.5
2,804,634	+		LRK54_RS12565	0.42	-0.5
2,804,634	+		LRK54_RS12565	0.42	-0.7
2,804,634	+		LRK54_RS12565	0.42	+3.3
2,804,635	-		LRK54_RS12565	0.42	-1.1
2,804,635	-		LRK54_RS12565	0.42	+0.6
2,804,635	-		LRK54_RS12565	0.42	+0.1
2,804,635	-		LRK54_RS12565	0.42	+2.1
2,804,635	-		LRK54_RS12565	0.42	-1.6
2,804,635	-		LRK54_RS12565	0.42	+2.7
2,804,635	-		LRK54_RS12565	0.42	+0.7
2,804,635	-		LRK54_RS12565	0.42	-0.4
2,804,635	-		LRK54_RS12565	0.42	-0.4
2,804,635	-		LRK54_RS12565	0.42	-1.5
2,804,635	-		LRK54_RS12565	0.42	+0.6
2,804,635	-		LRK54_RS12565	0.42	-0.9
2,804,635	-		LRK54_RS12565	0.42	-0.6
2,804,635	-		LRK54_RS12565	0.42	+1.7
2,804,635	-		LRK54_RS12565	0.42	+2.4
2,804,659	+		LRK54_RS12565	0.45	+0.7
2,804,659	+		LRK54_RS12565	0.45	+0.3
2,804,659	+		LRK54_RS12565	0.45	-2.0
2,804,659	+		LRK54_RS12565	0.45	+2.3
2,804,659	+		LRK54_RS12565	0.45	-0.6
2,804,659	+		LRK54_RS12565	0.45	+0.3
2,804,660	-		LRK54_RS12565	0.45	-1.3
2,804,660	-		LRK54_RS12565	0.45	-0.6
2,804,660	-		LRK54_RS12565	0.45	+0.5
2,804,660	-		LRK54_RS12565	0.45	-3.1
2,804,745	+		LRK54_RS12565	0.57	-1.4
2,804,746	-		LRK54_RS12565	0.58	-2.3
2,804,746	-		LRK54_RS12565	0.58	-1.1
2,804,808	+		LRK54_RS12565	0.66	-0.1
2,804,809	-		LRK54_RS12565	0.66	+0.0
2,804,809	-		LRK54_RS12565	0.66	+0.3
2,804,836	+		LRK54_RS12565	0.70	+0.7
2,804,836	+		LRK54_RS12565	0.70	+0.2
2,804,836	+		LRK54_RS12565	0.70	-0.3
2,804,836	+		LRK54_RS12565	0.70	+0.3
2,804,836	+		LRK54_RS12565	0.70	+0.1
2,804,836	+		LRK54_RS12565	0.70	-0.4
2,804,837	-		LRK54_RS12565	0.70	-0.9
2,804,837	-		LRK54_RS12565	0.70	-1.8
2,804,837	-		LRK54_RS12565	0.70	-2.1
2,804,837	-		LRK54_RS12565	0.70	-1.0
2,804,837	-		LRK54_RS12565	0.70	-1.1
2,804,837	-		LRK54_RS12565	0.70	+0.6
2,804,837	-		LRK54_RS12565	0.70	-1.0
2,804,837	-		LRK54_RS12565	0.70	+1.6
2,804,837	-		LRK54_RS12565	0.70	-0.2
2,804,874	+		LRK54_RS12565	0.76	-0.2
2,804,874	+		LRK54_RS12565	0.76	-2.0
2,804,874	+		LRK54_RS12565	0.76	+0.3
2,804,874	+		LRK54_RS12565	0.76	-2.7
2,804,874	+		LRK54_RS12565	0.76	-1.5
2,804,875	-		LRK54_RS12565	0.76	-0.6
2,804,883	+		LRK54_RS12565	0.77	+0.9
2,804,883	+		LRK54_RS12565	0.77	-1.7
2,804,883	+		LRK54_RS12565	0.77	-0.0
2,804,884	-		LRK54_RS12565	0.77	+0.4
2,804,902	+		LRK54_RS12565	0.79	+0.7
2,804,902	+		LRK54_RS12565	0.79	-0.9
2,804,902	+		LRK54_RS12565	0.79	-1.5
2,804,902	+		LRK54_RS12565	0.79	+0.6
2,804,902	+		LRK54_RS12565	0.79	+1.0
2,804,902	+		LRK54_RS12565	0.79	-1.9
2,804,902	+		LRK54_RS12565	0.79	-1.4
2,804,902	+		LRK54_RS12565	0.79	-0.7
2,804,902	+		LRK54_RS12565	0.79	+0.1
2,804,902	+		LRK54_RS12565	0.79	-0.8
2,804,902	+		LRK54_RS12565	0.79	+0.1
2,804,902	+		LRK54_RS12565	0.79	-1.0
2,804,902	+		LRK54_RS12565	0.79	-1.8
2,804,902	+		LRK54_RS12565	0.79	-0.2
2,804,902	+		LRK54_RS12565	0.79	-0.5
2,804,902	+		LRK54_RS12565	0.79	-0.3
2,804,903	-		LRK54_RS12565	0.80	-0.4
2,804,903	-		LRK54_RS12565	0.80	-2.5
2,804,903	-		LRK54_RS12565	0.80	+0.4
2,804,903	-		LRK54_RS12565	0.80	-1.1
2,804,903	-		LRK54_RS12565	0.80	+1.0
2,804,903	-		LRK54_RS12565	0.80	-2.7
2,804,903	-		LRK54_RS12565	0.80	+1.9
2,804,903	-		LRK54_RS12565	0.80	-0.1
2,804,903	-		LRK54_RS12565	0.80	-1.0
2,804,903	-		LRK54_RS12565	0.80	-0.1
2,804,903	-		LRK54_RS12565	0.80	-0.7
2,804,903	-		LRK54_RS12565	0.80	-1.7
2,804,944	+		LRK54_RS12565	0.85	-1.4
2,804,944	+		LRK54_RS12565	0.85	-0.1
2,804,944	+		LRK54_RS12565	0.85	-1.1
2,804,945	-		LRK54_RS12565	0.86	-1.3
2,805,011	+				-2.0
2,805,011	+				+1.0
2,805,012	-				-0.3
2,805,012	-				+1.3
2,805,012	-				-0.1
2,805,015	+				-2.2
2,805,015	+				-0.8
2,805,015	+				+0.7
2,805,015	+				+0.4
2,805,015	+				-0.1
2,805,015	+				+0.3
2,805,015	+				-1.0
2,805,015	+				+0.8
2,805,015	+				-0.9
2,805,016	-				-2.1
2,805,026	+				-1.9
2,805,026	+				+0.3
2,805,026	+				+0.2
2,805,026	+				+1.0
2,805,026	+				-3.0
2,805,026	+				+0.6
2,805,026	+				-0.1
2,805,027	-				-0.6
2,805,027	-				-0.9
2,805,027	-				-0.4
2,805,027	-				+1.4
2,805,027	-				+0.7
2,805,027	-				-1.7
2,805,027	-				-1.2
2,805,155	+		LRK54_RS12570	0.10	-1.5
2,805,155	+		LRK54_RS12570	0.10	-1.4
2,805,155	+		LRK54_RS12570	0.10	-1.8
2,805,155	+		LRK54_RS12570	0.10	+1.0
2,805,155	+		LRK54_RS12570	0.10	+0.7
2,805,155	+		LRK54_RS12570	0.10	-0.9
2,805,156	-		LRK54_RS12570	0.10	+1.2
2,805,156	-		LRK54_RS12570	0.10	-1.5
2,805,156	-		LRK54_RS12570	0.10	-0.9
2,805,156	-		LRK54_RS12570	0.10	+0.5
2,805,156	-		LRK54_RS12570	0.10	-0.4
2,805,156	-		LRK54_RS12570	0.10	-1.8
2,805,156	-		LRK54_RS12570	0.10	-2.5
2,805,156	-		LRK54_RS12570	0.10	+0.6
2,805,156	-		LRK54_RS12570	0.10	-0.5
2,805,174	+		LRK54_RS12570	0.12	-2.8
2,805,175	-		LRK54_RS12570	0.12	+0.5
2,805,212	+		LRK54_RS12570	0.15	+0.6
2,805,212	+		LRK54_RS12570	0.15	-1.7
2,805,212	+		LRK54_RS12570	0.15	-0.3
2,805,212	+		LRK54_RS12570	0.15	-1.1
2,805,212	+		LRK54_RS12570	0.15	-1.0
2,805,213	-		LRK54_RS12570	0.15	-0.5
2,805,213	-		LRK54_RS12570	0.15	-2.3
2,805,213	-		LRK54_RS12570	0.15	+1.9
2,805,213	-		LRK54_RS12570	0.15	-0.5
2,805,213	-		LRK54_RS12570	0.15	-1.9
2,805,213	-		LRK54_RS12570	0.15	-1.7
2,805,213	-		LRK54_RS12570	0.15	-0.4
2,805,280	-		LRK54_RS12570	0.21	-0.4
2,805,375	+		LRK54_RS12570	0.30	+0.4
2,805,375	+		LRK54_RS12570	0.30	-0.9
2,805,376	-		LRK54_RS12570	0.30	-0.3
2,805,376	-		LRK54_RS12570	0.30	-1.2
2,805,376	-		LRK54_RS12570	0.30	-0.1
2,805,376	-		LRK54_RS12570	0.30	-1.7
2,805,376	-		LRK54_RS12570	0.30	-2.9
2,805,376	-		LRK54_RS12570	0.30	+0.6
2,805,376	-		LRK54_RS12570	0.30	-2.1
2,805,376	-		LRK54_RS12570	0.30	+2.3
2,805,376	-		LRK54_RS12570	0.30	-0.1
2,805,376	-		LRK54_RS12570	0.30	+1.7
2,805,376	-		LRK54_RS12570	0.30	-1.3
2,805,376	-		LRK54_RS12570	0.30	-0.3
2,805,387	+		LRK54_RS12570	0.31	-0.4
2,805,387	+		LRK54_RS12570	0.31	+1.0
2,805,387	+		LRK54_RS12570	0.31	-0.7
2,805,387	+		LRK54_RS12570	0.31	+1.0
2,805,388	-		LRK54_RS12570	0.31	-0.7
2,805,388	-		LRK54_RS12570	0.31	-1.1
2,805,388	-		LRK54_RS12570	0.31	+0.1
2,805,388	-		LRK54_RS12570	0.31	-0.9
2,805,388	-		LRK54_RS12570	0.31	-0.6
2,805,388	-		LRK54_RS12570	0.31	+0.5
2,805,471	+		LRK54_RS12570	0.39	+0.1
2,805,471	+		LRK54_RS12570	0.39	-0.3
2,805,471	+		LRK54_RS12570	0.39	-0.2
2,805,471	+		LRK54_RS12570	0.39	+1.1
2,805,471	+		LRK54_RS12570	0.39	-0.2
2,805,471	+		LRK54_RS12570	0.39	-1.1
2,805,471	+		LRK54_RS12570	0.39	+0.3
2,805,471	+		LRK54_RS12570	0.39	-2.0
2,805,472	-		LRK54_RS12570	0.39	-0.5
2,805,472	-		LRK54_RS12570	0.39	+0.1
2,805,472	-		LRK54_RS12570	0.39	+0.5
2,805,472	-		LRK54_RS12570	0.39	-0.2
2,805,472	-		LRK54_RS12570	0.39	+1.1
2,805,472	-		LRK54_RS12570	0.39	-0.9
2,805,496	+		LRK54_RS12570	0.41	-1.1
2,805,496	+		LRK54_RS12570	0.41	-0.6
2,805,496	+		LRK54_RS12570	0.41	+1.9
2,805,497	-		LRK54_RS12570	0.41	-0.9
2,805,497	-		LRK54_RS12570	0.41	+2.7
2,805,497	-		LRK54_RS12570	0.41	-1.3
2,805,497	-		LRK54_RS12570	0.41	-1.6
2,805,497	-		LRK54_RS12570	0.41	-2.3
2,805,528	-		LRK54_RS12570	0.44	-0.7
2,805,528	-		LRK54_RS12570	0.44	-0.1
2,805,534	-		LRK54_RS12570	0.45	+1.2
2,805,550	+		LRK54_RS12570	0.46	-1.0
2,805,552	+		LRK54_RS12570	0.46	+0.3
2,805,553	-		LRK54_RS12570	0.46	-0.7
2,805,553	-		LRK54_RS12570	0.46	-0.7
2,805,553	-		LRK54_RS12570	0.46	-1.0
2,805,553	-		LRK54_RS12570	0.46	+0.8
2,805,686	+		LRK54_RS12570	0.58	-2.2
2,805,686	+		LRK54_RS12570	0.58	+0.6
2,805,686	+		LRK54_RS12570	0.58	-0.3
2,805,687	-		LRK54_RS12570	0.59	-0.4
2,805,687	-		LRK54_RS12570	0.59	+3.7
2,805,699	+		LRK54_RS12570	0.60	-1.3
2,805,699	+		LRK54_RS12570	0.60	-1.6
2,805,699	+		LRK54_RS12570	0.60	+0.1
2,805,699	+		LRK54_RS12570	0.60	-0.1
2,805,699	+		LRK54_RS12570	0.60	-1.4
2,805,699	+		LRK54_RS12570	0.60	-0.5
2,805,699	+		LRK54_RS12570	0.60	-0.0
2,805,699	+		LRK54_RS12570	0.60	+1.1
2,805,699	+		LRK54_RS12570	0.60	-0.2
2,805,699	+		LRK54_RS12570	0.60	-0.3
2,805,699	+		LRK54_RS12570	0.60	+0.7
2,805,699	+		LRK54_RS12570	0.60	-1.7
2,805,699	+		LRK54_RS12570	0.60	-2.7
2,805,699	+		LRK54_RS12570	0.60	-1.1
2,805,699	+		LRK54_RS12570	0.60	+0.6
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2,805,700	-		LRK54_RS12570	0.60	+1.1
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2,805,700	-		LRK54_RS12570	0.60	+0.1
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2,805,878	+		LRK54_RS12570	0.76	-1.2
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