Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17185

Experiment: planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,753,983	+		LRK54_RS17180	0.42	-0.1
3,753,983	+		LRK54_RS17180	0.42	-0.5
3,753,983	+		LRK54_RS17180	0.42	-1.0
3,753,983	+		LRK54_RS17180	0.42	+0.1
3,753,983	+		LRK54_RS17180	0.42	-0.8
3,753,983	+		LRK54_RS17180	0.42	+1.7
3,753,983	+		LRK54_RS17180	0.42	-1.2
3,753,983	+		LRK54_RS17180	0.42	-0.2
3,753,983	+		LRK54_RS17180	0.42	+0.5
3,753,983	+		LRK54_RS17180	0.42	-1.2
3,753,984	-		LRK54_RS17180	0.42	-1.2
3,753,984	-		LRK54_RS17180	0.42	-1.2
3,753,984	-		LRK54_RS17180	0.42	+0.1
3,753,984	-		LRK54_RS17180	0.42	-0.5
3,754,336	+		LRK54_RS17180	0.66	-0.8
3,754,337	-		LRK54_RS17180	0.67	-0.2
3,754,403	+		LRK54_RS17180	0.71	-0.4
3,754,413	-		LRK54_RS17180	0.72	-0.6
3,754,604	+		LRK54_RS17180	0.85	-0.8
3,754,604	+		LRK54_RS17180	0.85	-0.6
3,754,604	+		LRK54_RS17180	0.85	+2.9
3,754,604	+		LRK54_RS17180	0.85	-0.4
3,754,604	+		LRK54_RS17180	0.85	+0.4
3,754,605	-		LRK54_RS17180	0.85	-0.9
3,754,736	+				-0.2
3,754,736	+				-0.0
3,754,736	+				-1.3
3,754,736	+				-0.9
3,754,736	+				-3.5
3,754,736	+				+0.4
3,754,736	+				+0.2
3,754,736	+				-0.6
3,754,736	+				-1.3
3,754,736	+				-0.8
3,754,736	+				-0.2
3,754,736	+				-3.3
3,754,736	+				-0.6
3,754,736	+				+0.1
3,754,736	+				-1.0
3,754,736	+				-0.4
3,754,736	+				+1.0
3,754,737	-				-1.2
3,754,737	-				+0.9
3,754,737	-				-0.1
3,754,737	-				-1.2
3,754,737	-				-0.9
3,754,737	-				-2.2
3,754,737	-				-0.5
3,754,737	-				+0.8
3,754,737	-				-0.1
3,754,737	-				-1.1
3,754,737	-				+0.6
3,754,737	-				+0.5
3,754,737	-				+2.2
3,754,737	-				-0.7
3,754,737	-				+0.0
3,754,737	-				-0.8
3,754,753	+				+0.6
3,754,753	+				-0.1
3,754,753	+				-1.3
3,754,753	+				-0.7
3,754,753	+				+0.6
3,754,753	+				-0.4
3,754,753	+				-2.0
3,754,753	+				-0.5
3,754,753	+				-0.4
3,754,753	+				-0.5
3,754,754	-				+0.3
3,754,754	-				-0.4
3,754,754	-				+1.1
3,754,754	-				-2.1
3,754,754	-				+2.9
3,754,754	-				-1.2
3,754,754	-				-0.4
3,754,754	-				+0.4
3,754,754	-				-0.2
3,754,790	+				-0.2
3,754,790	+				-2.4
3,754,790	+				-1.8
3,754,790	+				+0.5
3,754,790	+				+0.2
3,754,790	+				-1.2
3,754,790	+				+1.7
3,754,790	+				-1.2
3,754,790	+				-1.4
3,754,790	+				-0.6
3,754,791	-				-1.4
3,754,791	-				+0.6
3,754,791	-				+0.4
3,754,791	-				-1.8
3,754,791	-				-0.0
3,754,791	-				+0.4
3,754,791	-				+1.1
3,754,791	-				+0.1
3,754,791	-				-1.1
3,754,791	-				-0.4
3,754,793	+				-0.3
3,754,793	+				+0.1
3,754,793	+				-0.4
3,754,793	+				+0.4
3,754,793	+				-2.0
3,754,794	-				-0.4
3,754,794	-				-0.1
3,754,794	-				-0.8
3,754,794	-				-0.3
3,754,794	-				+1.7
3,754,794	-				-0.5
3,754,794	-				-0.4
3,754,799	+				-0.7
3,754,799	+				+0.1
3,754,799	+				+0.6
3,754,799	+				-1.5
3,754,799	+				-0.5
3,754,800	-				+0.1
3,754,800	-				-0.7
3,754,800	-				-0.7
3,754,800	-				+0.1
3,754,800	-				-0.1
3,754,800	-				-0.5
3,754,800	-				+0.1
3,754,800	-				+0.2
3,754,848	+				-0.2
3,754,848	+				+0.8
3,754,848	+				+1.5
3,754,848	+				-0.2
3,754,848	+				-0.6
3,754,848	+				-2.6
3,754,849	-				-0.7
3,754,849	-				+0.0
3,754,908	+				-2.5
3,754,909	-				-1.6
3,754,955	+				-0.7
3,754,955	+				-0.8
3,754,955	+				-1.1
3,754,955	+				-2.7
3,754,956	-				+0.4
3,754,956	-				+2.4
3,754,956	-				+0.3
3,754,956	-				+0.1
3,755,232	+		LRK54_RS17185	0.20	+0.2
3,755,232	+		LRK54_RS17185	0.20	-1.5
3,755,233	-		LRK54_RS17185	0.20	+0.0
3,755,324	-		LRK54_RS17185	0.27	-0.2
3,755,324	-		LRK54_RS17185	0.27	+1.0
3,755,721	-		LRK54_RS17185	0.56	-0.5
3,755,845	+		LRK54_RS17185	0.65	+0.2
3,755,845	+		LRK54_RS17185	0.65	-1.3
3,755,845	+		LRK54_RS17185	0.65	-1.2
3,755,845	+		LRK54_RS17185	0.65	-1.5
3,755,845	+		LRK54_RS17185	0.65	+0.5
3,755,845	+		LRK54_RS17185	0.65	-2.3
3,755,845	+		LRK54_RS17185	0.65	-1.7
3,755,845	+		LRK54_RS17185	0.65	+1.4
3,755,846	-		LRK54_RS17185	0.65	-0.1
3,755,846	-		LRK54_RS17185	0.65	-0.9
3,755,846	-		LRK54_RS17185	0.65	+0.4
3,755,846	-		LRK54_RS17185	0.65	-0.2
3,755,846	-		LRK54_RS17185	0.65	-1.4
3,755,846	-		LRK54_RS17185	0.65	-0.9
3,755,846	-		LRK54_RS17185	0.65	-0.3
3,755,846	-		LRK54_RS17185	0.65	-1.2
3,755,846	-		LRK54_RS17185	0.65	-0.7
3,755,846	-		LRK54_RS17185	0.65	-1.5
3,755,846	-		LRK54_RS17185	0.65	-2.1
3,755,846	-		LRK54_RS17185	0.65	-0.5
3,755,846	-		LRK54_RS17185	0.65	-0.4
3,755,846	-		LRK54_RS17185	0.65	-0.3
3,755,900	+		LRK54_RS17185	0.69	+1.2
3,755,900	+		LRK54_RS17185	0.69	-0.1
3,755,900	+		LRK54_RS17185	0.69	-1.1
3,755,900	+		LRK54_RS17185	0.69	-0.9
3,755,901	-		LRK54_RS17185	0.69	-0.7
3,755,901	-		LRK54_RS17185	0.69	-1.8
3,755,901	-		LRK54_RS17185	0.69	-0.4
3,755,901	-		LRK54_RS17185	0.69	+0.1
3,755,901	-		LRK54_RS17185	0.69	-0.7
3,755,901	-		LRK54_RS17185	0.69	+1.6
3,755,901	-		LRK54_RS17185	0.69	-2.7
3,756,011	+		LRK54_RS17185	0.77	-0.5
3,756,011	+		LRK54_RS17185	0.77	-0.3
3,756,011	+		LRK54_RS17185	0.77	-2.1
3,756,011	+		LRK54_RS17185	0.77	-0.6
3,756,011	+		LRK54_RS17185	0.77	-2.1
3,756,011	+		LRK54_RS17185	0.77	-0.8
3,756,011	+		LRK54_RS17185	0.77	-1.4
3,756,011	+		LRK54_RS17185	0.77	-0.7
3,756,011	+		LRK54_RS17185	0.77	+0.9
3,756,011	+		LRK54_RS17185	0.77	-1.6
3,756,011	+		LRK54_RS17185	0.77	-0.4
3,756,011	+		LRK54_RS17185	0.77	-0.7
3,756,011	+		LRK54_RS17185	0.77	+0.2
3,756,011	+		LRK54_RS17185	0.77	-1.4
3,756,012	-		LRK54_RS17185	0.77	-1.9
3,756,012	-		LRK54_RS17185	0.77	+0.6
3,756,012	-		LRK54_RS17185	0.77	-1.1
3,756,012	-		LRK54_RS17185	0.77	-0.2
3,756,012	-		LRK54_RS17185	0.77	+0.8
3,756,012	-		LRK54_RS17185	0.77	-0.8
3,756,012	-		LRK54_RS17185	0.77	-1.3
3,756,012	-		LRK54_RS17185	0.77	-0.1
3,756,012	-		LRK54_RS17185	0.77	-0.5
3,756,012	-		LRK54_RS17185	0.77	-1.0
3,756,012	-		LRK54_RS17185	0.77	-0.3
3,756,012	-		LRK54_RS17185	0.77	-0.5
3,756,012	-		LRK54_RS17185	0.77	-0.1
3,756,012	-		LRK54_RS17185	0.77	-2.6
3,756,012	-		LRK54_RS17185	0.77	-0.8
3,756,012	-		LRK54_RS17185	0.77	-1.3
3,756,047	+		LRK54_RS17185	0.80	+3.5
3,756,047	+		LRK54_RS17185	0.80	+0.7
3,756,048	-		LRK54_RS17185	0.80	-0.3
3,756,048	-		LRK54_RS17185	0.80	-1.7
3,756,048	-		LRK54_RS17185	0.80	-0.2
3,756,170	+		LRK54_RS17185	0.89	-0.1
3,756,170	+		LRK54_RS17185	0.89	-3.4
3,756,170	+		LRK54_RS17185	0.89	+1.9
3,756,170	+		LRK54_RS17185	0.89	-1.6
3,756,170	+		LRK54_RS17185	0.89	-1.5
3,756,170	+		LRK54_RS17185	0.89	+0.7
3,756,170	+		LRK54_RS17185	0.89	-0.2
3,756,170	+		LRK54_RS17185	0.89	-0.8
3,756,170	+		LRK54_RS17185	0.89	-0.1
3,756,170	+		LRK54_RS17185	0.89	+0.8
3,756,170	+		LRK54_RS17185	0.89	+0.5
3,756,170	+		LRK54_RS17185	0.89	+1.4
3,756,170	+		LRK54_RS17185	0.89	-1.1
3,756,170	+		LRK54_RS17185	0.89	-0.7
3,756,170	+		LRK54_RS17185	0.89	+0.1
3,756,170	+		LRK54_RS17185	0.89	+0.3
3,756,170	+		LRK54_RS17185	0.89	+0.2
3,756,170	+		LRK54_RS17185	0.89	-1.3
3,756,170	+		LRK54_RS17185	0.89	-0.1
3,756,170	+		LRK54_RS17185	0.89	+0.1
3,756,170	+		LRK54_RS17185	0.89	-0.1
3,756,171	-		LRK54_RS17185	0.89	-2.3
3,756,171	-		LRK54_RS17185	0.89	+0.6
3,756,171	-		LRK54_RS17185	0.89	+0.1
3,756,171	-		LRK54_RS17185	0.89	-0.8
3,756,171	-		LRK54_RS17185	0.89	+1.4
3,756,171	-		LRK54_RS17185	0.89	+1.1
3,756,171	-		LRK54_RS17185	0.89	+0.5
3,756,171	-		LRK54_RS17185	0.89	-0.2
3,756,171	-		LRK54_RS17185	0.89	+0.1
3,756,171	-		LRK54_RS17185	0.89	-0.3
3,756,171	-		LRK54_RS17185	0.89	-0.7
3,756,171	-		LRK54_RS17185	0.89	-0.4
3,756,171	-		LRK54_RS17185	0.89	+0.1
3,756,171	-		LRK54_RS17185	0.89	+0.2
3,756,171	-		LRK54_RS17185	0.89	-2.5
3,756,171	-		LRK54_RS17185	0.89	-2.0
3,756,171	-		LRK54_RS17185	0.89	+0.9
3,756,171	-		LRK54_RS17185	0.89	-0.8
3,756,171	-		LRK54_RS17185	0.89	+1.4
3,756,171	-		LRK54_RS17185	0.89	+1.8
3,756,171	-		LRK54_RS17185	0.89	+0.5
3,756,171	-		LRK54_RS17185	0.89	-1.6
3,756,171	-		LRK54_RS17185	0.89	-0.2
3,756,171	-		LRK54_RS17185	0.89	-0.8
3,756,171	-		LRK54_RS17185	0.89	-1.7
3,756,171	-		LRK54_RS17185	0.89	+0.4
3,756,171	-		LRK54_RS17185	0.89	-0.1
3,756,171	-		LRK54_RS17185	0.89	-0.6
3,756,171	-		LRK54_RS17185	0.89	-0.4
3,756,171	-		LRK54_RS17185	0.89	-1.2
3,756,171	-		LRK54_RS17185	0.89	+3.7
3,756,324	+				+0.5
3,756,324	+				+0.6
3,756,324	+				+0.1
3,756,324	+				-2.1
3,756,324	+				+0.4
3,756,324	+				+0.8
3,756,324	+				-0.1
3,756,324	+				+1.2
3,756,324	+				-0.6
3,756,325	-				-1.9
3,756,325	-				+0.1
3,756,325	-				-0.2
3,756,325	-				-0.9
3,756,325	-				-0.2
3,756,325	-				+0.4
3,756,325	-				-1.3
3,756,325	-				+0.7
3,756,325	-				+0.2
3,756,325	-				-0.6
3,756,325	-				+0.3
3,756,325	-				-0.0
3,756,325	-				+0.3
3,756,338	+				-2.5
3,756,338	+				+0.6
3,756,338	+				-2.0
3,756,338	+				+0.9
3,756,352	+				+2.1
3,756,352	+				+0.6
3,756,352	+				+0.0
3,756,353	-				-2.6
3,756,353	-				-0.2
3,756,585	+		LRK54_RS17190	0.11	-2.3
3,756,824	+		LRK54_RS17190	0.27	-0.3
3,756,824	+		LRK54_RS17190	0.27	-2.5
3,756,824	+		LRK54_RS17190	0.27	-0.5
3,756,824	+		LRK54_RS17190	0.27	+0.7
3,756,824	+		LRK54_RS17190	0.27	-0.7
3,756,824	+		LRK54_RS17190	0.27	-1.1
3,756,824	+		LRK54_RS17190	0.27	+0.4
3,756,824	+		LRK54_RS17190	0.27	-0.1
3,756,824	+		LRK54_RS17190	0.27	-0.5
3,756,825	-		LRK54_RS17190	0.28	-1.1
3,757,124	+		LRK54_RS17190	0.48	+0.1
3,757,124	+		LRK54_RS17190	0.48	+2.8
3,757,125	-		LRK54_RS17190	0.48	+1.9
3,757,125	-		LRK54_RS17190	0.48	+0.9
3,757,125	-		LRK54_RS17190	0.48	+0.9
3,757,145	+		LRK54_RS17190	0.49	-0.9
3,757,145	+		LRK54_RS17190	0.49	-0.9
3,757,145	+		LRK54_RS17190	0.49	-0.0
3,757,145	+		LRK54_RS17190	0.49	+0.1
3,757,145	+		LRK54_RS17190	0.49	-0.4
3,757,146	-		LRK54_RS17190	0.49	-0.4
3,757,146	-		LRK54_RS17190	0.49	-2.2
3,757,148	-		LRK54_RS17190	0.50	-0.4
3,757,205	+		LRK54_RS17190	0.53	+0.1
3,757,205	+		LRK54_RS17190	0.53	-0.2
3,757,206	-		LRK54_RS17190	0.54	-2.0
3,757,206	-		LRK54_RS17190	0.54	+0.3
3,757,206	-		LRK54_RS17190	0.54	-0.9
3,757,206	-		LRK54_RS17190	0.54	-1.6