Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09065

Experiment: planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
1,977,578	+		LRK54_RS09055	0.62	+0.4
1,977,578	+		LRK54_RS09055	0.62	-1.1
1,977,578	+		LRK54_RS09055	0.62	+1.3
1,977,578	+		LRK54_RS09055	0.62	-0.0
1,977,578	+		LRK54_RS09055	0.62	+1.1
1,977,578	+		LRK54_RS09055	0.62	-0.1
1,977,578	+		LRK54_RS09055	0.62	-1.7
1,977,578	+		LRK54_RS09055	0.62	+1.5
1,977,578	+		LRK54_RS09055	0.62	+1.2
1,977,578	+		LRK54_RS09055	0.62	-0.2
1,977,578	+		LRK54_RS09055	0.62	+2.1
1,977,578	+		LRK54_RS09055	0.62	+0.3
1,977,578	+		LRK54_RS09055	0.62	-0.4
1,977,578	+		LRK54_RS09055	0.62	-0.1
1,977,578	+		LRK54_RS09055	0.62	+0.1
1,977,578	+		LRK54_RS09055	0.62	+2.1
1,977,578	+		LRK54_RS09055	0.62	+0.8
1,977,578	+		LRK54_RS09055	0.62	+0.7
1,977,578	+		LRK54_RS09055	0.62	+0.6
1,977,578	+		LRK54_RS09055	0.62	-1.2
1,977,578	+		LRK54_RS09055	0.62	-0.4
1,977,579	-		LRK54_RS09055	0.62	-0.3
1,977,579	-		LRK54_RS09055	0.62	-0.8
1,977,579	-		LRK54_RS09055	0.62	-0.4
1,977,579	-		LRK54_RS09055	0.62	-0.1
1,977,579	-		LRK54_RS09055	0.62	-0.4
1,977,579	-		LRK54_RS09055	0.62	+2.8
1,977,579	-		LRK54_RS09055	0.62	-0.9
1,977,579	-		LRK54_RS09055	0.62	-0.6
1,977,579	-		LRK54_RS09055	0.62	-0.0
1,977,579	-		LRK54_RS09055	0.62	+1.3
1,977,579	-		LRK54_RS09055	0.62	-0.3
1,977,579	-		LRK54_RS09055	0.62	+1.1
1,977,579	-		LRK54_RS09055	0.62	-0.7
1,977,579	-		LRK54_RS09055	0.62	+0.7
1,977,579	-		LRK54_RS09055	0.62	+0.3
1,977,579	-		LRK54_RS09055	0.62	+0.1
1,977,579	-		LRK54_RS09055	0.62	+0.0
1,977,579	-		LRK54_RS09055	0.62	+0.0
1,977,579	-		LRK54_RS09055	0.62	+1.7
1,977,579	-		LRK54_RS09055	0.62	-0.4
1,977,579	-		LRK54_RS09055	0.62	-1.2
1,977,641	+		LRK54_RS09055	0.66	+0.5
1,977,641	+		LRK54_RS09055	0.66	-1.1
1,977,641	+		LRK54_RS09055	0.66	-0.0
1,977,641	+		LRK54_RS09055	0.66	-2.2
1,977,642	-		LRK54_RS09055	0.66	+0.4
1,977,642	-		LRK54_RS09055	0.66	+0.2
1,977,642	-		LRK54_RS09055	0.66	+1.1
1,977,642	-		LRK54_RS09055	0.66	-1.0
1,977,642	-		LRK54_RS09055	0.66	-1.5
1,977,642	-		LRK54_RS09055	0.66	-2.3
1,977,692	+		LRK54_RS09055	0.69	-0.9
1,977,692	+		LRK54_RS09055	0.69	-0.3
1,977,692	+		LRK54_RS09055	0.69	+0.9
1,977,692	+		LRK54_RS09055	0.69	-0.3
1,977,692	+		LRK54_RS09055	0.69	+1.6
1,977,692	+		LRK54_RS09055	0.69	+0.6
1,977,692	+		LRK54_RS09055	0.69	-0.1
1,977,692	+		LRK54_RS09055	0.69	+1.5
1,977,692	+		LRK54_RS09055	0.69	+0.8
1,977,692	+		LRK54_RS09055	0.69	-0.1
1,977,692	+		LRK54_RS09055	0.69	+1.3
1,977,693	-		LRK54_RS09055	0.69	-0.1
1,977,693	-		LRK54_RS09055	0.69	+1.7
1,977,693	-		LRK54_RS09055	0.69	+0.3
1,977,693	-		LRK54_RS09055	0.69	-0.1
1,977,693	-		LRK54_RS09055	0.69	+0.0
1,977,693	-		LRK54_RS09055	0.69	+0.4
1,977,693	-		LRK54_RS09055	0.69	+0.5
1,977,693	-		LRK54_RS09055	0.69	+3.1
1,977,693	-		LRK54_RS09055	0.69	+0.1
1,977,693	-		LRK54_RS09055	0.69	-0.2
1,977,693	-		LRK54_RS09055	0.69	+1.5
1,977,693	-		LRK54_RS09055	0.69	-0.8
1,977,693	-		LRK54_RS09055	0.69	+0.9
1,977,693	-		LRK54_RS09055	0.69	-0.4
1,977,693	-		LRK54_RS09055	0.69	-0.3
1,977,693	-		LRK54_RS09055	0.69	+2.3
1,977,693	-		LRK54_RS09055	0.69	+1.6
1,977,693	-		LRK54_RS09055	0.69	-0.6
1,977,693	-		LRK54_RS09055	0.69	+0.5
1,977,698	+		LRK54_RS09055	0.69	-0.1
1,977,698	+		LRK54_RS09055	0.69	-0.9
1,977,698	+		LRK54_RS09055	0.69	-1.0
1,977,698	+		LRK54_RS09055	0.69	-1.3
1,977,698	+		LRK54_RS09055	0.69	-0.5
1,977,698	+		LRK54_RS09055	0.69	-1.5
1,977,698	+		LRK54_RS09055	0.69	+0.6
1,977,698	+		LRK54_RS09055	0.69	+0.5
1,977,698	+		LRK54_RS09055	0.69	+0.3
1,977,698	+		LRK54_RS09055	0.69	-0.8
1,977,698	+		LRK54_RS09055	0.69	+0.0
1,977,699	-		LRK54_RS09055	0.69	+0.5
1,977,699	-		LRK54_RS09055	0.69	-0.6
1,977,699	-		LRK54_RS09055	0.69	-0.1
1,977,699	-		LRK54_RS09055	0.69	-0.1
1,977,699	-		LRK54_RS09055	0.69	-1.0
1,977,699	-		LRK54_RS09055	0.69	+0.2
1,977,699	-		LRK54_RS09055	0.69	-0.8
1,977,699	-		LRK54_RS09055	0.69	+1.0
1,977,699	-		LRK54_RS09055	0.69	+1.4
1,977,699	-		LRK54_RS09055	0.69	+0.2
1,977,699	-		LRK54_RS09055	0.69	+1.4
1,977,699	-		LRK54_RS09055	0.69	+0.5
1,977,699	-		LRK54_RS09055	0.69	-1.2
1,977,699	-		LRK54_RS09055	0.69	-0.1
1,977,699	-		LRK54_RS09055	0.69	-1.2
1,977,757	+		LRK54_RS09055	0.73	+1.3
1,977,757	+		LRK54_RS09055	0.73	-1.9
1,977,757	+		LRK54_RS09055	0.73	-0.8
1,977,757	+		LRK54_RS09055	0.73	+3.1
1,977,757	+		LRK54_RS09055	0.73	+0.8
1,977,757	+		LRK54_RS09055	0.73	-2.4
1,977,757	+		LRK54_RS09055	0.73	-0.1
1,977,757	+		LRK54_RS09055	0.73	-0.7
1,977,758	-		LRK54_RS09055	0.73	-0.6
1,977,758	-		LRK54_RS09055	0.73	-0.5
1,977,758	-		LRK54_RS09055	0.73	+1.5
1,977,758	-		LRK54_RS09055	0.73	+0.4
1,977,758	-		LRK54_RS09055	0.73	+0.7
1,977,758	-		LRK54_RS09055	0.73	-1.3
1,977,758	-		LRK54_RS09055	0.73	-1.8
1,977,758	-		LRK54_RS09055	0.73	-0.9
1,977,758	-		LRK54_RS09055	0.73	-0.3
1,977,758	-		LRK54_RS09055	0.73	-1.7
1,977,758	-		LRK54_RS09055	0.73	-1.5
1,977,758	-		LRK54_RS09055	0.73	+0.0
1,977,962	+		LRK54_RS09055	0.86	-1.0
1,977,962	+		LRK54_RS09055	0.86	+0.1
1,977,962	+		LRK54_RS09055	0.86	-1.0
1,977,962	+		LRK54_RS09055	0.86	-0.9
1,977,962	+		LRK54_RS09055	0.86	-0.1
1,977,962	+		LRK54_RS09055	0.86	+1.1
1,977,962	+		LRK54_RS09055	0.86	-0.1
1,977,962	+		LRK54_RS09055	0.86	-3.1
1,977,962	+		LRK54_RS09055	0.86	-0.2
1,977,962	+		LRK54_RS09055	0.86	+2.7
1,977,962	+		LRK54_RS09055	0.86	-1.4
1,977,962	+		LRK54_RS09055	0.86	-0.3
1,977,962	+		LRK54_RS09055	0.86	-1.5
1,977,962	+		LRK54_RS09055	0.86	-0.9
1,977,962	+		LRK54_RS09055	0.86	-0.7
1,977,962	+		LRK54_RS09055	0.86	-0.9
1,977,963	-		LRK54_RS09055	0.86	-1.7
1,977,963	-		LRK54_RS09055	0.86	-1.4
1,977,963	-		LRK54_RS09055	0.86	+0.0
1,977,963	-		LRK54_RS09055	0.86	-1.3
1,977,963	-		LRK54_RS09055	0.86	+1.1
1,977,963	-		LRK54_RS09055	0.86	-0.2
1,977,963	-		LRK54_RS09055	0.86	-0.3
1,977,963	-		LRK54_RS09055	0.86	-0.1
1,977,963	-		LRK54_RS09055	0.86	+0.5
1,977,963	-		LRK54_RS09055	0.86	+0.8
1,977,963	-		LRK54_RS09055	0.86	-0.6
1,977,963	-		LRK54_RS09055	0.86	+0.6
1,977,963	-		LRK54_RS09055	0.86	-0.0
1,977,963	-		LRK54_RS09055	0.86	+0.2
1,977,963	-		LRK54_RS09055	0.86	+1.2
1,977,963	-		LRK54_RS09055	0.86	+0.6
1,977,963	-		LRK54_RS09055	0.86	-0.4
1,977,963	-		LRK54_RS09055	0.86	+0.3
1,977,963	-		LRK54_RS09055	0.86	-1.5
1,977,963	-		LRK54_RS09055	0.86	-2.8
1,977,963	-		LRK54_RS09055	0.86	+0.5
1,977,963	-		LRK54_RS09055	0.86	+1.0
1,977,963	-		LRK54_RS09055	0.86	-0.6
1,977,963	-		LRK54_RS09055	0.86	-0.1
1,977,965	+		LRK54_RS09055	0.86	-1.4
1,977,965	+		LRK54_RS09055	0.86	+0.3
1,977,965	+		LRK54_RS09055	0.86	+1.5
1,977,965	+		LRK54_RS09055	0.86	-0.5
1,977,965	+		LRK54_RS09055	0.86	-0.8
1,977,966	-		LRK54_RS09055	0.86	+0.6
1,978,013	+		LRK54_RS09055	0.89	-0.9
1,978,013	+		LRK54_RS09055	0.89	-1.0
1,978,013	+		LRK54_RS09055	0.89	-1.0
1,978,014	-		LRK54_RS09055	0.89	-0.7
1,978,014	-		LRK54_RS09055	0.89	-0.8
1,978,014	-		LRK54_RS09055	0.89	+1.6
1,978,014	-		LRK54_RS09055	0.89	-0.1
1,978,014	-		LRK54_RS09055	0.89	-0.6
1,978,014	-		LRK54_RS09055	0.89	-0.1
1,978,014	-		LRK54_RS09055	0.89	-1.1
1,978,014	-		LRK54_RS09055	0.89	-0.3
1,978,085	+				-2.0
1,978,085	+				+0.9
1,978,085	+				-0.4
1,978,085	+				-1.6
1,978,085	+				-2.5
1,978,085	+				+0.3
1,978,085	+				+0.2
1,978,085	+				-0.3
1,978,085	+				-1.4
1,978,085	+				+0.6
1,978,085	+				+0.0
1,978,085	+				-1.0
1,978,085	+				+0.5
1,978,085	+				-0.5
1,978,086	-				+0.0
1,978,086	-				-2.3
1,978,086	-				-1.5
1,978,086	-				-0.8
1,978,086	-				+1.1
1,978,086	-				-0.0
1,978,086	-				+0.0
1,978,086	-				+1.5
1,978,086	-				-1.5
1,978,086	-				+0.2
1,978,086	-				-0.0
1,978,086	-				-0.8
1,978,121	+				-0.4
1,978,121	+				-0.1
1,978,121	+				-1.1
1,978,121	+				-0.2
1,978,121	+				+0.9
1,978,121	+				-0.5
1,978,122	-				-0.2
1,978,122	-				-0.4
1,978,122	-				-0.7
1,978,122	-				-2.3
1,978,122	-				-0.1
1,978,122	-				-2.2
1,978,122	-				+1.1
1,978,188	+				+0.7
1,978,211	-				+0.1
1,978,228	+				+1.0
1,978,246	+				+0.3
1,978,246	+				-2.5
1,978,246	+				+0.8
1,978,246	+				-1.5
1,978,246	+				-1.2
1,978,246	+				-1.6
1,978,246	+				-1.4
1,978,246	+				+0.8
1,978,247	-				+1.3
1,978,247	-				-2.2
1,978,247	-				+0.1
1,978,247	-				-0.4
1,978,247	-				+0.1
1,978,323	+		LRK54_RS09060	0.35	-1.7
1,978,323	+		LRK54_RS09060	0.35	+0.6
1,978,323	+		LRK54_RS09060	0.35	-0.4
1,978,323	+		LRK54_RS09060	0.35	-1.1
1,978,323	+		LRK54_RS09060	0.35	-0.6
1,978,323	+		LRK54_RS09060	0.35	-0.4
1,978,324	-		LRK54_RS09060	0.35	+1.4
1,978,324	-		LRK54_RS09060	0.35	-3.3
1,978,324	-		LRK54_RS09060	0.35	-0.2
1,978,324	-		LRK54_RS09060	0.35	-1.1
1,978,324	-		LRK54_RS09060	0.35	-1.5
1,978,324	-		LRK54_RS09060	0.35	-1.1
1,978,324	-		LRK54_RS09060	0.35	-1.8
1,978,324	-		LRK54_RS09060	0.35	-0.5
1,978,324	-		LRK54_RS09060	0.35	-0.4
1,978,324	-		LRK54_RS09060	0.35	-0.9
1,978,324	-		LRK54_RS09060	0.35	+1.5
1,978,354	+		LRK54_RS09060	0.48	-0.1
1,978,354	+		LRK54_RS09060	0.48	-1.2
1,978,354	+		LRK54_RS09060	0.48	-1.2
1,978,354	+		LRK54_RS09060	0.48	-1.6
1,978,354	+		LRK54_RS09060	0.48	-0.0
1,978,354	+		LRK54_RS09060	0.48	-0.9
1,978,354	+		LRK54_RS09060	0.48	-0.6
1,978,354	+		LRK54_RS09060	0.48	-1.4
1,978,354	+		LRK54_RS09060	0.48	-2.1
1,978,354	+		LRK54_RS09060	0.48	+0.4
1,978,354	+		LRK54_RS09060	0.48	-1.0
1,978,354	+		LRK54_RS09060	0.48	+1.8
1,978,354	+		LRK54_RS09060	0.48	-0.6
1,978,354	+		LRK54_RS09060	0.48	-1.7
1,978,354	+		LRK54_RS09060	0.48	-1.4
1,978,354	+		LRK54_RS09060	0.48	-0.2
1,978,355	-		LRK54_RS09060	0.49	-2.0
1,978,355	-		LRK54_RS09060	0.49	-0.2
1,978,355	-		LRK54_RS09060	0.49	+0.4
1,978,355	-		LRK54_RS09060	0.49	-1.2
1,978,355	-		LRK54_RS09060	0.49	-0.8
1,978,355	-		LRK54_RS09060	0.49	-0.1
1,978,355	-		LRK54_RS09060	0.49	-0.2
1,978,355	-		LRK54_RS09060	0.49	-0.2
1,978,357	+		LRK54_RS09060	0.50	+0.5
1,978,357	+		LRK54_RS09060	0.50	-0.0
1,978,357	+		LRK54_RS09060	0.50	-1.4
1,978,357	+		LRK54_RS09060	0.50	-0.8
1,978,357	+		LRK54_RS09060	0.50	-0.0
1,978,357	+		LRK54_RS09060	0.50	-0.6
1,978,358	-		LRK54_RS09060	0.50	-1.4
1,978,358	-		LRK54_RS09060	0.50	+0.2
1,978,358	-		LRK54_RS09060	0.50	-2.3
1,978,358	-		LRK54_RS09060	0.50	-0.3
1,978,358	-		LRK54_RS09060	0.50	-0.7
1,978,358	-		LRK54_RS09060	0.50	-0.2
1,978,358	-		LRK54_RS09060	0.50	-0.7
1,978,370	+		LRK54_RS09060	0.56	+0.7
1,978,371	-		LRK54_RS09060	0.56	+0.2
1,978,402	+		LRK54_RS09060	0.70	-0.0
1,978,402	+		LRK54_RS09060	0.70	-0.7
1,978,402	+		LRK54_RS09060	0.70	+0.0
1,978,402	+		LRK54_RS09060	0.70	+0.8
1,978,402	+		LRK54_RS09060	0.70	-1.9
1,978,402	+		LRK54_RS09060	0.70	+1.0
1,978,402	+		LRK54_RS09060	0.70	-0.7
1,978,403	-		LRK54_RS09060	0.70	+0.7
1,978,403	-		LRK54_RS09060	0.70	-0.7
1,978,403	-		LRK54_RS09060	0.70	-0.1
1,978,403	-		LRK54_RS09060	0.70	-2.4
1,978,403	-		LRK54_RS09060	0.70	-1.8
1,978,403	-		LRK54_RS09060	0.70	-0.3
1,978,452	+				-1.0
1,978,452	+				+1.5
1,978,452	+				+0.5
1,978,452	+				+2.1
1,978,452	+				-0.1
1,978,453	-				+0.1
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