Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05690

Experiment: planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
1,227,971	+		LRK54_RS05685	0.39	+0.3
1,227,971	+		LRK54_RS05685	0.39	-1.2
1,227,971	+		LRK54_RS05685	0.39	+0.7
1,227,971	+		LRK54_RS05685	0.39	-1.3
1,227,971	+		LRK54_RS05685	0.39	-0.1
1,227,971	+		LRK54_RS05685	0.39	+0.2
1,227,971	+		LRK54_RS05685	0.39	-0.6
1,227,971	+		LRK54_RS05685	0.39	-0.9
1,227,972	-		LRK54_RS05685	0.39	-1.0
1,227,972	-		LRK54_RS05685	0.39	-1.0
1,227,972	-		LRK54_RS05685	0.39	-1.4
1,227,972	-		LRK54_RS05685	0.39	-2.5
1,227,972	-		LRK54_RS05685	0.39	-0.3
1,227,989	+		LRK54_RS05685	0.40	-3.8
1,228,031	+		LRK54_RS05685	0.43	-2.1
1,228,031	+		LRK54_RS05685	0.43	-1.8
1,228,032	-		LRK54_RS05685	0.43	-2.4
1,228,032	-		LRK54_RS05685	0.43	-1.5
1,228,032	-		LRK54_RS05685	0.43	-1.8
1,228,032	-		LRK54_RS05685	0.43	+1.7
1,228,169	+		LRK54_RS05685	0.53	-0.5
1,228,170	-		LRK54_RS05685	0.53	-1.3
1,228,170	-		LRK54_RS05685	0.53	-0.1
1,228,170	-		LRK54_RS05685	0.53	-2.1
1,228,505	+		LRK54_RS05685	0.77	-1.3
1,228,505	+		LRK54_RS05685	0.77	-0.9
1,228,506	-		LRK54_RS05685	0.77	+0.4
1,228,506	-		LRK54_RS05685	0.77	+0.6
1,228,506	-		LRK54_RS05685	0.77	-0.5
1,228,523	+		LRK54_RS05685	0.78	-0.5
1,228,523	+		LRK54_RS05685	0.78	+0.7
1,228,523	+		LRK54_RS05685	0.78	-0.9
1,228,523	+		LRK54_RS05685	0.78	-2.6
1,228,523	+		LRK54_RS05685	0.78	-1.4
1,228,523	+		LRK54_RS05685	0.78	-1.9
1,228,523	+		LRK54_RS05685	0.78	+0.2
1,228,523	+		LRK54_RS05685	0.78	-0.9
1,228,523	+		LRK54_RS05685	0.78	-1.1
1,228,523	+		LRK54_RS05685	0.78	-1.0
1,228,523	+		LRK54_RS05685	0.78	-1.3
1,228,523	+		LRK54_RS05685	0.78	-0.9
1,228,523	+		LRK54_RS05685	0.78	-2.2
1,228,523	+		LRK54_RS05685	0.78	-0.1
1,228,523	+		LRK54_RS05685	0.78	-1.7
1,228,523	+		LRK54_RS05685	0.78	-0.0
1,228,524	-		LRK54_RS05685	0.78	-1.0
1,228,524	-		LRK54_RS05685	0.78	-2.3
1,228,524	-		LRK54_RS05685	0.78	-1.9
1,228,524	-		LRK54_RS05685	0.78	-0.7
1,228,524	-		LRK54_RS05685	0.78	-3.3
1,228,524	-		LRK54_RS05685	0.78	-1.9
1,228,524	-		LRK54_RS05685	0.78	-1.5
1,228,524	-		LRK54_RS05685	0.78	+0.1
1,228,524	-		LRK54_RS05685	0.78	+0.7
1,228,524	-		LRK54_RS05685	0.78	-1.0
1,228,524	-		LRK54_RS05685	0.78	-1.3
1,228,524	-		LRK54_RS05685	0.78	+1.6
1,228,524	-		LRK54_RS05685	0.78	-0.1
1,228,524	-		LRK54_RS05685	0.78	-0.6
1,228,524	-		LRK54_RS05685	0.78	-1.2
1,228,524	-		LRK54_RS05685	0.78	-1.7
1,228,700	+				-1.2
1,228,700	+				+1.1
1,228,700	+				+2.2
1,228,700	+				+0.1
1,228,700	+				-0.5
1,228,700	+				-1.5
1,228,700	+				-1.2
1,228,700	+				+0.1
1,228,700	+				-1.8
1,228,700	+				+0.2
1,228,700	+				+0.3
1,228,700	+				-1.0
1,228,700	+				-1.8
1,228,700	+				+0.6
1,228,700	+				-0.5
1,228,700	+				-0.9
1,228,700	+				+0.1
1,228,700	+				-1.3
1,228,700	+				-0.4
1,228,700	+				-1.0
1,228,700	+				-2.6
1,228,700	+				-1.4
1,228,700	+				-0.7
1,228,700	+				-0.8
1,228,700	+				-0.5
1,228,700	+				-1.9
1,228,700	+				-1.9
1,228,700	+				-0.3
1,228,700	+				-0.9
1,228,700	+				-1.3
1,228,700	+				-1.4
1,228,700	+				-1.3
1,228,700	+				-0.1
1,228,700	+				-1.9
1,228,700	+				-0.1
1,228,700	+				-1.9
1,228,700	+				-0.4
1,228,701	-				+0.5
1,228,701	-				-1.2
1,228,701	-				-0.7
1,228,701	-				+0.2
1,228,701	-				-0.9
1,228,701	-				-1.6
1,228,701	-				-1.9
1,228,701	-				+1.1
1,228,701	-				-0.9
1,228,701	-				-0.5
1,228,701	-				+0.2
1,228,701	-				-2.2
1,228,701	-				-1.3
1,228,701	-				-0.8
1,228,701	-				-1.8
1,228,701	-				-0.6
1,228,701	-				-0.3
1,228,701	-				+0.2
1,228,701	-				-1.0
1,228,701	-				-0.0
1,228,701	-				-0.9
1,228,701	-				-0.9
1,228,701	-				+1.5
1,228,701	-				-2.8
1,228,701	-				-2.0
1,228,701	-				-1.4
1,228,701	-				-1.9
1,228,701	-				+3.1
1,228,701	-				+0.8
1,228,701	-				+0.3
1,228,701	-				-0.9
1,228,701	-				+0.9
1,228,701	-				+0.7
1,228,701	-				-1.3
1,228,701	-				-0.9
1,228,701	-				-1.4
1,228,701	-				-0.4
1,228,701	-				-1.8
1,228,701	-				-3.4
1,228,701	-				-1.8
1,228,701	-				+0.3
1,228,701	-				-0.4
1,228,781	+				-0.5
1,228,781	+				-1.2
1,228,781	+				-1.3
1,228,781	+				+0.6
1,228,781	+				-1.5
1,228,781	+				-0.1
1,228,781	+				-0.5
1,228,781	+				+1.8
1,228,781	+				-1.4
1,228,781	+				-0.7
1,228,781	+				-1.9
1,228,781	+				-0.1
1,228,781	+				-1.2
1,228,781	+				-0.4
1,228,781	+				-0.5
1,228,781	+				-1.5
1,228,781	+				-1.0
1,228,781	+				-1.1
1,228,781	+				-0.6
1,228,781	+				-0.2
1,228,782	-				+2.6
1,228,782	-				-0.8
1,228,782	-				+1.5
1,228,782	-				-0.3
1,228,782	-				+1.7
1,228,782	-				+2.5
1,228,782	-				-0.5
1,228,782	-				-1.3
1,228,782	-				-1.5
1,228,782	-				-0.3
1,228,782	-				-0.4
1,228,782	-				-0.8
1,228,782	-				-1.6
1,228,782	-				-2.7
1,228,782	-				-0.9
1,228,782	-				-0.2
1,228,782	-				-0.5
1,228,808	+				+0.5
1,228,809	-				-1.9
1,228,809	-				-1.2
1,228,820	+				-1.0
1,228,820	+				+0.2
1,228,821	-				+0.3
1,228,821	-				-0.6
1,228,821	-				-2.4
1,228,821	-				-1.0
1,229,287	+		LRK54_RS05690	0.13	-2.0
1,229,288	-		LRK54_RS05690	0.13	-1.4
1,229,288	-		LRK54_RS05690	0.13	-1.2
1,229,288	-		LRK54_RS05690	0.13	+1.0
1,229,582	+		LRK54_RS05690	0.24	+0.5
1,229,582	+		LRK54_RS05690	0.24	-1.3
1,229,608	+		LRK54_RS05690	0.25	-0.8
1,229,608	+		LRK54_RS05690	0.25	+0.5
1,229,608	+		LRK54_RS05690	0.25	-0.6
1,229,608	+		LRK54_RS05690	0.25	+1.2
1,229,608	+		LRK54_RS05690	0.25	-2.6
1,229,608	+		LRK54_RS05690	0.25	+0.1
1,229,608	+		LRK54_RS05690	0.25	+0.4
1,229,608	+		LRK54_RS05690	0.25	+0.9
1,229,608	+		LRK54_RS05690	0.25	-0.4
1,229,608	+		LRK54_RS05690	0.25	-0.3
1,229,609	-		LRK54_RS05690	0.25	+1.6
1,229,609	-		LRK54_RS05690	0.25	+0.1
1,229,609	-		LRK54_RS05690	0.25	+1.6
1,229,609	-		LRK54_RS05690	0.25	-2.7
1,229,609	-		LRK54_RS05690	0.25	+0.6
1,229,609	-		LRK54_RS05690	0.25	+0.3
1,229,609	-		LRK54_RS05690	0.25	+0.2
1,229,609	-		LRK54_RS05690	0.25	+1.1
1,229,609	-		LRK54_RS05690	0.25	-0.9
1,230,262	+		LRK54_RS05690	0.51	-1.0
1,230,262	+		LRK54_RS05690	0.51	+0.3
1,230,262	+		LRK54_RS05690	0.51	+0.1
1,230,262	+		LRK54_RS05690	0.51	+0.3
1,230,262	+		LRK54_RS05690	0.51	-0.6
1,230,262	+		LRK54_RS05690	0.51	+1.8
1,230,262	+		LRK54_RS05690	0.51	-0.4
1,230,262	+		LRK54_RS05690	0.51	-1.3
1,230,262	+		LRK54_RS05690	0.51	-1.2
1,230,262	+		LRK54_RS05690	0.51	-0.5
1,230,262	+		LRK54_RS05690	0.51	+1.5
1,230,262	+		LRK54_RS05690	0.51	+1.1
1,230,262	+		LRK54_RS05690	0.51	-0.9
1,230,262	+		LRK54_RS05690	0.51	+0.7
1,230,262	+		LRK54_RS05690	0.51	-0.2
1,230,262	+		LRK54_RS05690	0.51	-0.2
1,230,262	+		LRK54_RS05690	0.51	-0.3
1,230,263	-		LRK54_RS05690	0.51	-0.4
1,230,263	-		LRK54_RS05690	0.51	-0.3
1,230,263	-		LRK54_RS05690	0.51	-0.8
1,230,263	-		LRK54_RS05690	0.51	+0.1
1,230,263	-		LRK54_RS05690	0.51	+0.3
1,230,263	-		LRK54_RS05690	0.51	+0.5
1,230,263	-		LRK54_RS05690	0.51	-1.5
1,230,263	-		LRK54_RS05690	0.51	+0.2
1,230,263	-		LRK54_RS05690	0.51	+0.2
1,230,263	-		LRK54_RS05690	0.51	+1.3
1,230,263	-		LRK54_RS05690	0.51	+1.1
1,230,263	-		LRK54_RS05690	0.51	+0.1
1,230,263	-		LRK54_RS05690	0.51	-1.5
1,230,263	-		LRK54_RS05690	0.51	-0.6
1,230,264	-		LRK54_RS05690	0.51	-0.1
1,230,325	+		LRK54_RS05690	0.53	+0.1
1,230,325	+		LRK54_RS05690	0.53	-0.9
1,230,325	+		LRK54_RS05690	0.53	-0.1
1,230,325	+		LRK54_RS05690	0.53	+0.3
1,230,325	+		LRK54_RS05690	0.53	+0.4
1,230,325	+		LRK54_RS05690	0.53	-0.8
1,230,326	-		LRK54_RS05690	0.54	-0.3
1,230,326	-		LRK54_RS05690	0.54	-0.1
1,230,326	-		LRK54_RS05690	0.54	-0.2
1,230,326	-		LRK54_RS05690	0.54	+0.7
1,230,397	+		LRK54_RS05690	0.56	+0.7
1,230,397	+		LRK54_RS05690	0.56	-0.3
1,230,398	-		LRK54_RS05690	0.56	-1.1
1,230,398	-		LRK54_RS05690	0.56	+0.4
1,230,554	+		LRK54_RS05690	0.62	-1.6
1,230,554	+		LRK54_RS05690	0.62	-0.3
1,230,554	+		LRK54_RS05690	0.62	+0.4
1,230,554	+		LRK54_RS05690	0.62	-1.1
1,230,554	+		LRK54_RS05690	0.62	+0.4
1,230,554	+		LRK54_RS05690	0.62	+0.2
1,230,554	+		LRK54_RS05690	0.62	-0.9
1,230,554	+		LRK54_RS05690	0.62	+0.0
1,230,554	+		LRK54_RS05690	0.62	+0.1
1,230,554	+		LRK54_RS05690	0.62	-2.1
1,230,554	+		LRK54_RS05690	0.62	+0.9
1,230,554	+		LRK54_RS05690	0.62	-0.9
1,230,554	+		LRK54_RS05690	0.62	+0.6
1,230,554	+		LRK54_RS05690	0.62	+2.1
1,230,554	+		LRK54_RS05690	0.62	-0.4
1,230,554	+		LRK54_RS05690	0.62	+0.2
1,230,554	+		LRK54_RS05690	0.62	+0.2
1,230,554	+		LRK54_RS05690	0.62	+0.4
1,230,554	+		LRK54_RS05690	0.62	+1.2
1,230,555	-		LRK54_RS05690	0.63	-1.2
1,230,555	-		LRK54_RS05690	0.63	-1.5
1,230,555	-		LRK54_RS05690	0.63	-0.0
1,230,555	-		LRK54_RS05690	0.63	-1.5
1,230,555	-		LRK54_RS05690	0.63	+0.2
1,230,555	-		LRK54_RS05690	0.63	+0.5
1,230,555	-		LRK54_RS05690	0.63	+0.3
1,230,555	-		LRK54_RS05690	0.63	-1.1
1,230,555	-		LRK54_RS05690	0.63	-1.4
1,230,555	-		LRK54_RS05690	0.63	-0.2
1,230,555	-		LRK54_RS05690	0.63	-1.1
1,230,555	-		LRK54_RS05690	0.63	-0.1
1,230,555	-		LRK54_RS05690	0.63	+0.3
1,230,555	-		LRK54_RS05690	0.63	-0.4
1,230,555	-		LRK54_RS05690	0.63	+0.6
1,230,555	-		LRK54_RS05690	0.63	+0.2
1,230,555	-		LRK54_RS05690	0.63	-1.2
1,230,555	-		LRK54_RS05690	0.63	-2.3
1,230,555	-		LRK54_RS05690	0.63	+0.4
1,230,555	-		LRK54_RS05690	0.63	-2.8
1,230,910	+		LRK54_RS05690	0.76	+0.1
1,230,910	+		LRK54_RS05690	0.76	+0.9
1,230,910	+		LRK54_RS05690	0.76	+0.1
1,230,910	+		LRK54_RS05690	0.76	-0.6
1,230,910	+		LRK54_RS05690	0.76	+0.3
1,230,910	+		LRK54_RS05690	0.76	+1.3
1,230,910	+		LRK54_RS05690	0.76	-0.3
1,230,910	+		LRK54_RS05690	0.76	-0.9
1,230,910	+		LRK54_RS05690	0.76	-1.3
1,230,910	+		LRK54_RS05690	0.76	+0.8
1,230,910	+		LRK54_RS05690	0.76	+0.5
1,230,911	-		LRK54_RS05690	0.76	-0.4
1,230,911	-		LRK54_RS05690	0.76	-0.3
1,230,911	-		LRK54_RS05690	0.76	-0.9
1,230,911	-		LRK54_RS05690	0.76	-1.0
1,230,911	-		LRK54_RS05690	0.76	+0.4
1,230,911	-		LRK54_RS05690	0.76	+0.7
1,230,911	-		LRK54_RS05690	0.76	+4.4
1,231,027	+		LRK54_RS05690	0.81	-0.2
1,231,027	+		LRK54_RS05690	0.81	-2.2
1,231,028	-		LRK54_RS05690	0.81	+0.6
1,231,028	-		LRK54_RS05690	0.81	+3.1
1,231,028	-		LRK54_RS05690	0.81	-0.0
1,231,028	-		LRK54_RS05690	0.81	-0.1
1,231,153	+		LRK54_RS05690	0.86	+0.3
1,231,153	+		LRK54_RS05690	0.86	+1.0
1,231,153	+		LRK54_RS05690	0.86	+0.0
1,231,153	+		LRK54_RS05690	0.86	+0.8
1,231,154	-		LRK54_RS05690	0.86	-0.5
1,231,154	-		LRK54_RS05690	0.86	+3.1
1,231,154	-		LRK54_RS05690	0.86	+0.6
1,231,154	-		LRK54_RS05690	0.86	+0.5
1,231,154	-		LRK54_RS05690	0.86	+0.2
1,231,154	-		LRK54_RS05690	0.86	+0.5
1,231,154	-		LRK54_RS05690	0.86	+0.3
1,231,154	-		LRK54_RS05690	0.86	+0.3
1,231,171	+		LRK54_RS05690	0.87	-0.9
1,231,171	+		LRK54_RS05690	0.87	+0.2
1,231,171	+		LRK54_RS05690	0.87	-1.0
1,231,171	+		LRK54_RS05690	0.87	+0.1
1,231,171	+		LRK54_RS05690	0.87	+0.4
1,231,171	+		LRK54_RS05690	0.87	-0.2
1,231,171	+		LRK54_RS05690	0.87	+0.0
1,231,171	+		LRK54_RS05690	0.87	+1.1
1,231,171	+		LRK54_RS05690	0.87	+1.5
1,231,171	+		LRK54_RS05690	0.87	-0.1
1,231,171	+		LRK54_RS05690	0.87	+1.6
1,231,171	+		LRK54_RS05690	0.87	+0.8
1,231,171	+		LRK54_RS05690	0.87	+0.1
1,231,171	+		LRK54_RS05690	0.87	+0.6
1,231,171	+		LRK54_RS05690	0.87	-0.4
1,231,171	+		LRK54_RS05690	0.87	+1.6
1,231,172	-		LRK54_RS05690	0.87	-1.5
1,231,172	-		LRK54_RS05690	0.87	+1.1
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1,231,349	+				+5.1
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