Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15680

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,455,308	+		LRK54_RS15670	0.80	+0.1
3,455,308	+		LRK54_RS15670	0.80	+0.0
3,455,308	+		LRK54_RS15670	0.80	-0.2
3,455,308	+		LRK54_RS15670	0.80	+0.1
3,455,308	+		LRK54_RS15670	0.80	-0.5
3,455,308	+		LRK54_RS15670	0.80	+1.0
3,455,308	+		LRK54_RS15670	0.80	-1.1
3,455,308	+		LRK54_RS15670	0.80	+0.5
3,455,308	+		LRK54_RS15670	0.80	-0.1
3,455,308	+		LRK54_RS15670	0.80	+1.1
3,455,308	+		LRK54_RS15670	0.80	-0.3
3,455,308	+		LRK54_RS15670	0.80	-0.7
3,455,308	+		LRK54_RS15670	0.80	-0.5
3,455,308	+		LRK54_RS15670	0.80	+0.4
3,455,308	+		LRK54_RS15670	0.80	-0.6
3,455,308	+		LRK54_RS15670	0.80	+0.2
3,455,308	+		LRK54_RS15670	0.80	+0.6
3,455,308	+		LRK54_RS15670	0.80	-0.3
3,455,308	+		LRK54_RS15670	0.80	+1.1
3,455,309	-		LRK54_RS15670	0.80	-1.3
3,455,309	-		LRK54_RS15670	0.80	-2.3
3,455,309	-		LRK54_RS15670	0.80	+2.2
3,455,309	-		LRK54_RS15670	0.80	+0.4
3,455,309	-		LRK54_RS15670	0.80	-0.0
3,455,309	-		LRK54_RS15670	0.80	+0.0
3,455,309	-		LRK54_RS15670	0.80	-0.6
3,455,309	-		LRK54_RS15670	0.80	+0.2
3,455,309	-		LRK54_RS15670	0.80	-1.9
3,455,309	-		LRK54_RS15670	0.80	-1.5
3,455,309	-		LRK54_RS15670	0.80	+0.4
3,455,309	-		LRK54_RS15670	0.80	-0.8
3,455,309	-		LRK54_RS15670	0.80	+1.3
3,455,309	-		LRK54_RS15670	0.80	-1.7
3,455,309	-		LRK54_RS15670	0.80	-0.3
3,455,309	-		LRK54_RS15670	0.80	-1.8
3,455,309	-		LRK54_RS15670	0.80	-1.5
3,455,309	-		LRK54_RS15670	0.80	+0.1
3,455,309	-		LRK54_RS15670	0.80	+0.3
3,455,344	+		LRK54_RS15670	0.83	-1.2
3,455,344	+		LRK54_RS15670	0.83	-0.1
3,455,344	+		LRK54_RS15670	0.83	-2.2
3,455,344	+		LRK54_RS15670	0.83	+0.0
3,455,344	+		LRK54_RS15670	0.83	-0.7
3,455,344	+		LRK54_RS15670	0.83	+0.8
3,455,344	+		LRK54_RS15670	0.83	+0.7
3,455,344	+		LRK54_RS15670	0.83	-1.2
3,455,344	+		LRK54_RS15670	0.83	-0.7
3,455,344	+		LRK54_RS15670	0.83	+0.2
3,455,344	+		LRK54_RS15670	0.83	+0.7
3,455,344	+		LRK54_RS15670	0.83	-2.3
3,455,344	+		LRK54_RS15670	0.83	+0.3
3,455,345	-		LRK54_RS15670	0.83	-0.1
3,455,345	-		LRK54_RS15670	0.83	+0.7
3,455,345	-		LRK54_RS15670	0.83	-0.8
3,455,345	-		LRK54_RS15670	0.83	-0.3
3,455,345	-		LRK54_RS15670	0.83	+0.2
3,455,345	-		LRK54_RS15670	0.83	+0.6
3,455,345	-		LRK54_RS15670	0.83	-2.2
3,455,345	-		LRK54_RS15670	0.83	+1.0
3,455,345	-		LRK54_RS15670	0.83	+1.0
3,455,345	-		LRK54_RS15670	0.83	+0.9
3,455,345	-		LRK54_RS15670	0.83	-1.6
3,455,345	-		LRK54_RS15670	0.83	+0.9
3,455,345	-		LRK54_RS15670	0.83	+2.1
3,455,345	-		LRK54_RS15670	0.83	-0.6
3,455,345	-		LRK54_RS15670	0.83	-2.1
3,455,345	-		LRK54_RS15670	0.83	-1.8
3,455,431	+		LRK54_RS15670	0.88	-2.3
3,455,431	+		LRK54_RS15670	0.88	-1.2
3,455,431	+		LRK54_RS15670	0.88	+0.4
3,455,432	-		LRK54_RS15670	0.88	-1.3
3,455,432	-		LRK54_RS15670	0.88	-0.6
3,455,432	-		LRK54_RS15670	0.88	-2.4
3,455,432	-		LRK54_RS15670	0.88	-1.6
3,455,432	-		LRK54_RS15670	0.88	+0.9
3,455,432	-		LRK54_RS15670	0.88	+1.0
3,455,432	-		LRK54_RS15670	0.88	-1.3
3,455,533	+				-3.3
3,455,533	+				+0.3
3,455,533	+				+0.4
3,455,533	+				+0.0
3,455,533	+				+1.8
3,455,533	+				-1.7
3,455,533	+				-0.5
3,455,533	+				-0.8
3,455,533	+				-1.8
3,455,533	+				+1.0
3,455,533	+				+0.8
3,455,533	+				+1.0
3,455,534	-				-0.5
3,455,534	-				+2.2
3,455,534	-				-0.5
3,455,534	-				-0.2
3,455,534	-				-0.5
3,455,534	-				-3.2
3,455,534	-				+0.2
3,455,534	-				+1.2
3,455,534	-				-1.0
3,455,534	-				-0.4
3,455,534	-				+0.6
3,455,534	-				-2.0
3,455,534	-				+0.6
3,455,534	-				-0.3
3,455,534	-				-1.7
3,455,534	-				-1.4
3,455,534	-				+2.1
3,455,534	-				+0.0
3,455,534	-				-2.3
3,455,534	-				-0.7
3,455,584	+				+0.2
3,455,584	+				+1.4
3,455,667	+		LRK54_RS15675	0.12	+0.1
3,455,667	+		LRK54_RS15675	0.12	+0.4
3,455,667	+		LRK54_RS15675	0.12	-0.5
3,455,667	+		LRK54_RS15675	0.12	-1.0
3,455,667	+		LRK54_RS15675	0.12	+0.6
3,455,668	-		LRK54_RS15675	0.12	-0.8
3,455,668	-		LRK54_RS15675	0.12	-0.5
3,455,688	+		LRK54_RS15675	0.16	+1.2
3,455,688	+		LRK54_RS15675	0.16	-0.2
3,455,688	+		LRK54_RS15675	0.16	-0.6
3,455,688	+		LRK54_RS15675	0.16	+0.3
3,455,688	+		LRK54_RS15675	0.16	-0.1
3,455,688	+		LRK54_RS15675	0.16	+0.4
3,455,688	+		LRK54_RS15675	0.16	+2.2
3,455,688	+		LRK54_RS15675	0.16	+1.2
3,455,688	+		LRK54_RS15675	0.16	+0.0
3,455,688	+		LRK54_RS15675	0.16	+0.3
3,455,688	+		LRK54_RS15675	0.16	+0.8
3,455,689	-		LRK54_RS15675	0.16	-1.4
3,455,689	-		LRK54_RS15675	0.16	+2.1
3,455,689	-		LRK54_RS15675	0.16	-1.9
3,455,689	-		LRK54_RS15675	0.16	-0.5
3,455,689	-		LRK54_RS15675	0.16	-0.2
3,455,689	-		LRK54_RS15675	0.16	+1.1
3,455,689	-		LRK54_RS15675	0.16	-1.5
3,455,689	-		LRK54_RS15675	0.16	-1.0
3,455,689	-		LRK54_RS15675	0.16	-0.7
3,455,689	-		LRK54_RS15675	0.16	-1.8
3,455,689	-		LRK54_RS15675	0.16	-0.1
3,455,689	-		LRK54_RS15675	0.16	-0.6
3,455,689	-		LRK54_RS15675	0.16	-1.0
3,455,689	-		LRK54_RS15675	0.16	-0.4
3,455,689	-		LRK54_RS15675	0.16	+0.9
3,455,689	-		LRK54_RS15675	0.16	-2.3
3,455,689	-		LRK54_RS15675	0.16	-0.1
3,455,689	-		LRK54_RS15675	0.16	-1.6
3,455,689	-		LRK54_RS15675	0.16	-0.4
3,455,712	+		LRK54_RS15675	0.20	+1.4
3,455,712	+		LRK54_RS15675	0.20	+0.7
3,455,712	+		LRK54_RS15675	0.20	+1.0
3,455,712	+		LRK54_RS15675	0.20	+0.0
3,455,712	+		LRK54_RS15675	0.20	-2.0
3,455,713	-		LRK54_RS15675	0.21	-1.0
3,455,713	-		LRK54_RS15675	0.21	-0.9
3,455,713	-		LRK54_RS15675	0.21	+0.0
3,455,713	-		LRK54_RS15675	0.21	-0.1
3,455,713	-		LRK54_RS15675	0.21	-1.1
3,455,778	+		LRK54_RS15675	0.32	-0.2
3,455,778	+		LRK54_RS15675	0.32	-0.7
3,455,778	+		LRK54_RS15675	0.32	-1.1
3,455,778	+		LRK54_RS15675	0.32	+2.0
3,455,778	+		LRK54_RS15675	0.32	+0.9
3,455,778	+		LRK54_RS15675	0.32	+3.4
3,455,778	+		LRK54_RS15675	0.32	-0.7
3,455,778	+		LRK54_RS15675	0.32	+3.8
3,455,778	+		LRK54_RS15675	0.32	+0.5
3,455,778	+		LRK54_RS15675	0.32	-1.1
3,455,778	+		LRK54_RS15675	0.32	+0.4
3,455,778	+		LRK54_RS15675	0.32	-1.5
3,455,778	+		LRK54_RS15675	0.32	+0.2
3,455,778	+		LRK54_RS15675	0.32	+0.4
3,455,778	+		LRK54_RS15675	0.32	+4.0
3,455,779	-		LRK54_RS15675	0.33	+0.3
3,455,779	-		LRK54_RS15675	0.33	+1.0
3,455,779	-		LRK54_RS15675	0.33	+0.7
3,455,779	-		LRK54_RS15675	0.33	+1.2
3,455,779	-		LRK54_RS15675	0.33	+0.7
3,455,779	-		LRK54_RS15675	0.33	-0.6
3,455,779	-		LRK54_RS15675	0.33	-0.6
3,455,779	-		LRK54_RS15675	0.33	-0.9
3,455,779	-		LRK54_RS15675	0.33	-1.5
3,455,779	-		LRK54_RS15675	0.33	+0.2
3,455,779	-		LRK54_RS15675	0.33	+0.2
3,455,779	-		LRK54_RS15675	0.33	-0.7
3,455,779	-		LRK54_RS15675	0.33	-0.2
3,455,779	-		LRK54_RS15675	0.33	-1.3
3,456,078	+		LRK54_RS15675	0.87	+1.2
3,456,078	+		LRK54_RS15675	0.87	+0.2
3,456,079	-		LRK54_RS15675	0.87	-0.5
3,456,079	-		LRK54_RS15675	0.87	+2.2
3,456,079	-		LRK54_RS15675	0.87	-0.8
3,456,079	-		LRK54_RS15675	0.87	-1.6
3,456,079	-		LRK54_RS15675	0.87	+1.1
3,456,079	-		LRK54_RS15675	0.87	-0.3
3,456,188	+				-1.1
3,456,188	+				-1.0
3,456,188	+				-0.1
3,456,188	+				-2.0
3,456,188	+				+0.6
3,456,188	+				-0.5
3,456,188	+				+0.6
3,456,188	+				-1.1
3,456,188	+				-2.7
3,456,188	+				-1.0
3,456,189	-				-1.9
3,456,189	-				-1.6
3,456,189	-				-0.8
3,456,189	-				+0.6
3,456,535	+		LRK54_RS15680	0.55	-1.0
3,456,535	+		LRK54_RS15680	0.55	-0.2
3,456,535	+		LRK54_RS15680	0.55	+3.1
3,456,535	+		LRK54_RS15680	0.55	-0.5
3,456,535	+		LRK54_RS15680	0.55	+0.0
3,456,535	+		LRK54_RS15680	0.55	+0.0
3,456,535	+		LRK54_RS15680	0.55	-0.8
3,456,536	-		LRK54_RS15680	0.55	+0.1
3,456,536	-		LRK54_RS15680	0.55	-0.2
3,456,536	-		LRK54_RS15680	0.55	+0.2
3,456,536	-		LRK54_RS15680	0.55	-0.8
3,456,536	-		LRK54_RS15680	0.55	+0.2
3,456,536	-		LRK54_RS15680	0.55	-0.1
3,456,536	-		LRK54_RS15680	0.55	+1.0
3,456,536	-		LRK54_RS15680	0.55	-1.6
3,456,536	-		LRK54_RS15680	0.55	-1.5
3,456,536	-		LRK54_RS15680	0.55	+3.1
3,456,536	-		LRK54_RS15680	0.55	+0.5
3,456,536	-		LRK54_RS15680	0.55	+0.5
3,456,536	-		LRK54_RS15680	0.55	-0.6
3,456,536	-		LRK54_RS15680	0.55	+0.2
3,456,536	-		LRK54_RS15680	0.55	-1.7
3,456,536	-		LRK54_RS15680	0.55	-2.2
3,456,680	-		LRK54_RS15680	0.90	-0.6
3,456,680	-		LRK54_RS15680	0.90	-0.1
3,456,765	+				-0.9
3,456,765	+				-1.6
3,456,765	+				-0.5
3,456,765	+				+0.4
3,456,765	+				+0.4
3,456,765	+				+0.1
3,456,765	+				-2.9
3,456,765	+				-1.7
3,456,765	+				-1.6
3,456,765	+				+0.2
3,456,765	+				-1.1
3,456,765	+				-0.6
3,456,765	+				-1.2
3,456,766	-				+1.0
3,456,766	-				+0.4
3,456,766	-				-0.4
3,456,766	-				+0.1
3,456,766	-				-1.0
3,456,766	-				-0.2
3,456,766	-				+3.8
3,457,074	+		LRK54_RS15685	0.19	-0.4
3,457,074	+		LRK54_RS15685	0.19	-0.7
3,457,074	+		LRK54_RS15685	0.19	-0.2
3,457,074	+		LRK54_RS15685	0.19	+0.4
3,457,074	+		LRK54_RS15685	0.19	+0.1
3,457,074	+		LRK54_RS15685	0.19	-1.0
3,457,074	+		LRK54_RS15685	0.19	+1.0
3,457,075	-		LRK54_RS15685	0.19	-1.2
3,457,075	-		LRK54_RS15685	0.19	-3.4
3,457,075	-		LRK54_RS15685	0.19	-0.4
3,457,075	-		LRK54_RS15685	0.19	-1.0
3,457,075	-		LRK54_RS15685	0.19	+0.4
3,457,075	-		LRK54_RS15685	0.19	+1.2
3,457,075	-		LRK54_RS15685	0.19	-0.0
3,457,075	-		LRK54_RS15685	0.19	+0.1
3,457,075	-		LRK54_RS15685	0.19	+0.1
3,457,075	-		LRK54_RS15685	0.19	-0.1
3,457,075	-		LRK54_RS15685	0.19	-1.5
3,457,075	-		LRK54_RS15685	0.19	-0.6
3,457,075	-		LRK54_RS15685	0.19	+2.1
3,457,075	-		LRK54_RS15685	0.19	-1.4
3,457,075	-		LRK54_RS15685	0.19	-0.3
3,457,083	+		LRK54_RS15685	0.19	-1.2
3,457,083	+		LRK54_RS15685	0.19	-1.7
3,457,083	+		LRK54_RS15685	0.19	-0.4
3,457,083	+		LRK54_RS15685	0.19	-1.5
3,457,083	+		LRK54_RS15685	0.19	+0.5
3,457,083	+		LRK54_RS15685	0.19	+0.2
3,457,083	+		LRK54_RS15685	0.19	+0.4
3,457,083	+		LRK54_RS15685	0.19	-0.4
3,457,084	-		LRK54_RS15685	0.19	+0.3
3,457,084	-		LRK54_RS15685	0.19	-0.7
3,457,084	-		LRK54_RS15685	0.19	-0.2
3,457,084	-		LRK54_RS15685	0.19	-0.6
3,457,084	-		LRK54_RS15685	0.19	+1.5
3,457,176	+		LRK54_RS15685	0.24	-0.8
3,457,176	+		LRK54_RS15685	0.24	-2.0
3,457,176	+		LRK54_RS15685	0.24	-1.8
3,457,176	+		LRK54_RS15685	0.24	+0.4
3,457,176	+		LRK54_RS15685	0.24	-1.1
3,457,176	+		LRK54_RS15685	0.24	+2.2
3,457,176	+		LRK54_RS15685	0.24	-0.4
3,457,177	-		LRK54_RS15685	0.24	-0.4
3,457,177	-		LRK54_RS15685	0.24	+0.3
3,457,177	-		LRK54_RS15685	0.24	-2.4
3,457,177	-		LRK54_RS15685	0.24	-1.4
3,457,177	-		LRK54_RS15685	0.24	-1.4
3,457,177	-		LRK54_RS15685	0.24	-1.7
3,457,177	-		LRK54_RS15685	0.24	+0.1
3,457,287	+		LRK54_RS15685	0.31	-0.9
3,457,287	+		LRK54_RS15685	0.31	-3.6
3,457,287	+		LRK54_RS15685	0.31	+1.8
3,457,287	+		LRK54_RS15685	0.31	-0.3
3,457,287	+		LRK54_RS15685	0.31	-1.4
3,457,287	+		LRK54_RS15685	0.31	-0.5
3,457,287	+		LRK54_RS15685	0.31	-0.1
3,457,288	-		LRK54_RS15685	0.31	-1.9
3,457,288	-		LRK54_RS15685	0.31	-0.2
3,457,288	-		LRK54_RS15685	0.31	+0.5
3,457,288	-		LRK54_RS15685	0.31	+0.4
3,457,288	-		LRK54_RS15685	0.31	+1.0
3,457,288	-		LRK54_RS15685	0.31	-0.9
3,457,288	-		LRK54_RS15685	0.31	-2.1
3,457,288	-		LRK54_RS15685	0.31	-1.3
3,457,288	-		LRK54_RS15685	0.31	+0.6
3,457,288	-		LRK54_RS15685	0.31	-1.2
3,457,356	+		LRK54_RS15685	0.34	-0.5
3,457,356	+		LRK54_RS15685	0.34	-1.2
3,457,407	+		LRK54_RS15685	0.37	-1.1
3,457,407	+		LRK54_RS15685	0.37	-1.7
3,457,407	+		LRK54_RS15685	0.37	+0.4
3,457,407	+		LRK54_RS15685	0.37	-0.2
3,457,408	-		LRK54_RS15685	0.37	-1.9
3,457,408	-		LRK54_RS15685	0.37	-0.6
3,457,408	-		LRK54_RS15685	0.37	-0.8
3,457,408	-		LRK54_RS15685	0.37	-1.6
3,457,408	-		LRK54_RS15685	0.37	+0.7
3,457,408	-		LRK54_RS15685	0.37	+2.2
3,457,408	-		LRK54_RS15685	0.37	+2.2
3,457,408	-		LRK54_RS15685	0.37	-1.0
3,457,467	+		LRK54_RS15685	0.41	+2.0
3,457,468	-		LRK54_RS15685	0.41	-1.0
3,457,468	-		LRK54_RS15685	0.41	-1.6