Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03955 and LRK54_RS03960 are separated by 14 nucleotides LRK54_RS03960 and LRK54_RS03965 overlap by 4 nucleotides LRK54_RS03965 and LRK54_RS03970 are separated by 136 nucleotides LRK54_RS03970 and LRK54_RS03975 overlap by 1 nucleotides
LRK54_RS03955: LRK54_RS03955 - endonuclease domain-containing protein, at 834,495 to 834,893
_RS03955
LRK54_RS03960: LRK54_RS03960 - A24 family peptidase, at 834,908 to 835,765
_RS03960
LRK54_RS03965: LRK54_RS03965 - dephospho-CoA kinase, at 835,762 to 836,382
_RS03965
LRK54_RS03970: LRK54_RS03970 - NUDIX domain-containing protein, at 836,519 to 836,935
_RS03970
LRK54_RS03975: LRK54_RS03975 - dihydrofolate reductase, at 836,935 to 837,423
_RS03975
Position (kb) 835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 834.790 kb on + strand, within LRK54_RS03955 at 834.790 kb on + strand, within LRK54_RS03955 at 834.790 kb on + strand, within LRK54_RS03955 at 834.790 kb on + strand, within LRK54_RS03955 at 834.790 kb on + strand, within LRK54_RS03955 at 834.791 kb on - strand, within LRK54_RS03955 at 834.791 kb on - strand, within LRK54_RS03955 at 834.891 kb on + strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.892 kb on - strand at 835.187 kb on + strand, within LRK54_RS03960 at 835.215 kb on - strand, within LRK54_RS03960 at 835.215 kb on - strand, within LRK54_RS03960 at 835.460 kb on + strand, within LRK54_RS03960 at 835.460 kb on + strand, within LRK54_RS03960 at 835.481 kb on + strand, within LRK54_RS03960 at 835.481 kb on + strand, within LRK54_RS03960 at 835.481 kb on + strand, within LRK54_RS03960 at 835.482 kb on - strand, within LRK54_RS03960 at 835.482 kb on - strand, within LRK54_RS03960 at 835.482 kb on - strand, within LRK54_RS03960 at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.739 kb on + strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 835.740 kb on - strand at 836.381 kb on - strand at 836.512 kb on + strand at 836.512 kb on + strand at 836.512 kb on + strand at 836.512 kb on + strand at 836.512 kb on + strand at 836.512 kb on + strand at 836.512 kb on + strand at 836.512 kb on + strand at 836.513 kb on - strand at 836.513 kb on - strand at 836.513 kb on - strand at 836.513 kb on - strand at 836.513 kb on - strand at 836.513 kb on - strand at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.694 kb on + strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970 at 836.695 kb on - strand, within LRK54_RS03970
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 834,790 + LRK54_RS03955 0.74 -1.3 834,790 + LRK54_RS03955 0.74 -2.5 834,790 + LRK54_RS03955 0.74 +0.7 834,790 + LRK54_RS03955 0.74 -0.5 834,790 + LRK54_RS03955 0.74 +1.6 834,791 - LRK54_RS03955 0.74 +0.7 834,791 - LRK54_RS03955 0.74 -0.7 834,891 + -0.0 834,891 + -1.2 834,891 + -0.1 834,892 - -0.4 835,187 + LRK54_RS03960 0.33 +0.0 835,215 - LRK54_RS03960 0.36 +0.5 835,215 - LRK54_RS03960 0.36 +3.6 835,460 + LRK54_RS03960 0.64 -0.1 835,460 + LRK54_RS03960 0.64 +0.4 835,481 + LRK54_RS03960 0.67 -1.2 835,481 + LRK54_RS03960 0.67 +0.6 835,481 + LRK54_RS03960 0.67 +1.8 835,482 - LRK54_RS03960 0.67 +0.8 835,482 - LRK54_RS03960 0.67 -1.5 835,482 - LRK54_RS03960 0.67 +2.5 835,739 + +1.1 835,739 + -1.7 835,739 + +0.7 835,739 + +0.8 835,739 + +0.9 835,739 + -1.6 835,739 + +0.1 835,739 + -0.0 835,739 + +0.0 835,739 + -1.4 835,739 + +0.3 835,739 + +2.9 835,740 - -0.2 835,740 - -0.7 835,740 - -0.0 835,740 - -0.5 835,740 - +1.7 835,740 - -1.4 835,740 - -1.1 835,740 - +3.9 835,740 - +0.2 835,740 - +0.7 835,740 - -1.1 835,740 - -2.1 835,740 - +0.2 835,740 - +0.2 835,740 - -1.7 835,740 - -0.5 835,740 - -0.1 835,740 - +0.2 835,740 - +0.5 835,740 - -0.4 836,381 - -0.1 836,512 + -0.4 836,512 + +0.1 836,512 + -0.5 836,512 + +0.2 836,512 + +0.3 836,512 + +0.3 836,512 + -1.3 836,512 + -0.1 836,513 - -2.0 836,513 - -0.7 836,513 - +0.6 836,513 - +0.7 836,513 - -0.5 836,513 - +0.2 836,694 + LRK54_RS03970 0.42 +1.0 836,694 + LRK54_RS03970 0.42 +1.4 836,694 + LRK54_RS03970 0.42 -1.5 836,694 + LRK54_RS03970 0.42 -1.8 836,694 + LRK54_RS03970 0.42 -0.8 836,694 + LRK54_RS03970 0.42 +0.3 836,694 + LRK54_RS03970 0.42 +2.5 836,694 + LRK54_RS03970 0.42 -0.3 836,694 + LRK54_RS03970 0.42 -0.7 836,694 + LRK54_RS03970 0.42 -0.3 836,694 + LRK54_RS03970 0.42 -0.0 836,694 + LRK54_RS03970 0.42 +0.9 836,694 + LRK54_RS03970 0.42 -0.0 836,695 - LRK54_RS03970 0.42 +0.3 836,695 - LRK54_RS03970 0.42 -0.5 836,695 - LRK54_RS03970 0.42 -2.8 836,695 - LRK54_RS03970 0.42 +0.6 836,695 - LRK54_RS03970 0.42 -0.4 836,695 - LRK54_RS03970 0.42 -0.2 836,695 - LRK54_RS03970 0.42 +2.6 836,695 - LRK54_RS03970 0.42 -1.1 836,695 - LRK54_RS03970 0.42 -1.8 836,695 - LRK54_RS03970 0.42 +1.0 836,695 - LRK54_RS03970 0.42 -0.2 836,695 - LRK54_RS03970 0.42 -1.3 836,695 - LRK54_RS03970 0.42 -1.4 836,695 - LRK54_RS03970 0.42 -2.2 836,695 - LRK54_RS03970 0.42 +1.1 836,695 - LRK54_RS03970 0.42 -0.3 836,695 - LRK54_RS03970 0.42 -1.7 836,695 - LRK54_RS03970 0.42 -1.1 836,695 - LRK54_RS03970 0.42 +1.1
Or see this region's nucleotide sequence