Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15745

Experiment: planktonic; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM;
3,467,226	+				-0.1
3,467,227	-				+0.1
3,467,227	-				-0.2
3,467,480	+				+1.3
3,467,480	+				+0.5
3,467,480	+				+1.5
3,467,480	+				-0.5
3,467,480	+				-1.0
3,467,481	-				+1.8
3,467,481	-				+1.0
3,467,537	+				-0.6
3,467,538	-				+0.0
3,467,538	-				-1.1
3,467,538	-				-1.8
3,467,538	-				+0.8
3,467,538	-				+0.4
3,467,538	-				-2.1
3,467,589	+				-1.1
3,467,589	+				+0.1
3,467,589	+				+0.7
3,467,589	+				-1.0
3,467,590	-				-1.2
3,467,590	-				+2.1
3,467,590	-				+1.0
3,467,590	-				+2.0
3,467,590	-				+0.7
3,467,590	-				+0.7
3,467,590	-				+1.0
3,467,590	-				-1.7
3,467,590	-				-0.3
3,467,756	+		LRK54_RS15740	0.52	-1.9
3,467,756	+		LRK54_RS15740	0.52	-0.7
3,467,757	-		LRK54_RS15740	0.52	-1.9
3,467,757	-		LRK54_RS15740	0.52	-1.2
3,467,757	-		LRK54_RS15740	0.52	-0.3
3,467,892	+				+0.6
3,467,892	+				-0.2
3,467,892	+				-0.5
3,467,892	+				-0.7
3,467,892	+				-1.0
3,467,892	+				+0.2
3,467,892	+				-0.7
3,467,892	+				-0.2
3,467,893	-				+0.2
3,467,893	-				-0.6
3,467,893	-				+0.2
3,467,893	-				+1.3
3,467,893	-				+0.4
3,467,893	-				-1.0
3,467,893	-				+0.8
3,467,893	-				-0.6
3,467,893	-				-1.0
3,468,105	-				-2.4
3,468,105	-				+0.1
3,468,175	+		LRK54_RS15745	0.21	-0.7
3,468,175	+		LRK54_RS15745	0.21	+0.5
3,468,175	+		LRK54_RS15745	0.21	-0.8
3,468,175	+		LRK54_RS15745	0.21	+0.1
3,468,176	-		LRK54_RS15745	0.21	-0.8
3,468,176	-		LRK54_RS15745	0.21	-2.7
3,468,176	-		LRK54_RS15745	0.21	-1.0
3,468,176	-		LRK54_RS15745	0.21	-0.2
3,468,176	-		LRK54_RS15745	0.21	-1.1
3,468,176	-		LRK54_RS15745	0.21	-0.3
3,468,176	-		LRK54_RS15745	0.21	-0.3
3,468,248	+		LRK54_RS15745	0.34	-0.9
3,468,248	+		LRK54_RS15745	0.34	-0.8
3,468,248	+		LRK54_RS15745	0.34	-1.5
3,468,248	+		LRK54_RS15745	0.34	+0.1
3,468,248	+		LRK54_RS15745	0.34	+1.6
3,468,248	+		LRK54_RS15745	0.34	+0.1
3,468,248	+		LRK54_RS15745	0.34	-1.0
3,468,248	+		LRK54_RS15745	0.34	+0.8
3,468,248	+		LRK54_RS15745	0.34	-0.7
3,468,248	+		LRK54_RS15745	0.34	+0.5
3,468,249	-		LRK54_RS15745	0.34	-0.1
3,468,249	-		LRK54_RS15745	0.34	-1.7
3,468,416	+		LRK54_RS15745	0.65	-0.1
3,468,416	+		LRK54_RS15745	0.65	-0.2
3,468,416	+		LRK54_RS15745	0.65	-1.4
3,468,416	+		LRK54_RS15745	0.65	+0.2
3,468,416	+		LRK54_RS15745	0.65	-1.9
3,468,416	+		LRK54_RS15745	0.65	+0.9
3,468,416	+		LRK54_RS15745	0.65	+1.0
3,468,416	+		LRK54_RS15745	0.65	+0.4
3,468,416	+		LRK54_RS15745	0.65	-1.4
3,468,416	+		LRK54_RS15745	0.65	-0.3
3,468,416	+		LRK54_RS15745	0.65	-0.3
3,468,416	+		LRK54_RS15745	0.65	-0.5
3,468,416	+		LRK54_RS15745	0.65	+0.6
3,468,417	-		LRK54_RS15745	0.65	-1.9
3,468,417	-		LRK54_RS15745	0.65	+0.3
3,468,417	-		LRK54_RS15745	0.65	+0.4
3,468,417	-		LRK54_RS15745	0.65	-0.3
3,468,417	-		LRK54_RS15745	0.65	-2.1
3,468,417	-		LRK54_RS15745	0.65	-0.3
3,468,417	-		LRK54_RS15745	0.65	-0.3
3,468,417	-		LRK54_RS15745	0.65	+4.5
3,468,417	-		LRK54_RS15745	0.65	+0.4
3,468,417	-		LRK54_RS15745	0.65	-0.5
3,468,417	-		LRK54_RS15745	0.65	+1.0
3,468,417	-		LRK54_RS15745	0.65	-0.7
3,468,417	-		LRK54_RS15745	0.65	+0.6
3,468,417	-		LRK54_RS15745	0.65	+1.0
3,468,417	-		LRK54_RS15745	0.65	+1.0
3,468,417	-		LRK54_RS15745	0.65	-2.4
3,468,455	+		LRK54_RS15745	0.72	+0.6
3,468,455	+		LRK54_RS15745	0.72	+0.3
3,468,455	+		LRK54_RS15745	0.72	-0.8
3,468,455	+		LRK54_RS15745	0.72	-0.5
3,468,455	+		LRK54_RS15745	0.72	-0.6
3,468,455	+		LRK54_RS15745	0.72	-0.7
3,468,455	+		LRK54_RS15745	0.72	+0.9
3,468,455	+		LRK54_RS15745	0.72	+0.2
3,468,455	+		LRK54_RS15745	0.72	+0.5
3,468,455	+		LRK54_RS15745	0.72	-2.1
3,468,455	+		LRK54_RS15745	0.72	+1.4
3,468,455	+		LRK54_RS15745	0.72	+0.2
3,468,455	+		LRK54_RS15745	0.72	+0.4
3,468,455	+		LRK54_RS15745	0.72	+2.7
3,468,455	+		LRK54_RS15745	0.72	-2.9
3,468,456	-		LRK54_RS15745	0.73	-0.9
3,468,456	-		LRK54_RS15745	0.73	+0.7
3,468,456	-		LRK54_RS15745	0.73	+0.5
3,468,456	-		LRK54_RS15745	0.73	-0.2
3,468,456	-		LRK54_RS15745	0.73	+1.0
3,468,456	-		LRK54_RS15745	0.73	+1.3
3,468,456	-		LRK54_RS15745	0.73	-0.1
3,468,456	-		LRK54_RS15745	0.73	-0.9
3,468,456	-		LRK54_RS15745	0.73	+2.4
3,468,456	-		LRK54_RS15745	0.73	-0.6
3,468,456	-		LRK54_RS15745	0.73	+0.8
3,468,456	-		LRK54_RS15745	0.73	-0.1
3,468,456	-		LRK54_RS15745	0.73	-0.8
3,468,456	-		LRK54_RS15745	0.73	-1.2
3,468,456	-		LRK54_RS15745	0.73	-0.6
3,468,456	-		LRK54_RS15745	0.73	+0.1
3,468,456	-		LRK54_RS15745	0.73	+0.7
3,468,494	+		LRK54_RS15745	0.80	+1.9
3,468,494	+		LRK54_RS15745	0.80	-1.0
3,468,495	-		LRK54_RS15745	0.80	+0.3
3,468,495	-		LRK54_RS15745	0.80	+0.3
3,468,671	+				-0.5
3,468,671	+				-2.0
3,468,671	+				+1.3
3,468,671	+				-0.2
3,468,740	+				-2.0
3,468,741	-				+0.4
3,468,741	-				+0.7
3,468,741	-				-0.8
3,468,878	+		LRK54_RS15750	0.13	+1.3
3,468,878	+		LRK54_RS15750	0.13	+0.3
3,468,878	+		LRK54_RS15750	0.13	-1.1
3,468,878	+		LRK54_RS15750	0.13	+1.8
3,468,878	+		LRK54_RS15750	0.13	-0.5
3,468,878	+		LRK54_RS15750	0.13	+0.3
3,468,878	+		LRK54_RS15750	0.13	-0.3
3,468,878	+		LRK54_RS15750	0.13	+2.5
3,468,879	-		LRK54_RS15750	0.13	+0.3
3,468,879	-		LRK54_RS15750	0.13	-2.5
3,468,879	-		LRK54_RS15750	0.13	-0.6
3,468,879	-		LRK54_RS15750	0.13	-0.3
3,468,879	-		LRK54_RS15750	0.13	+0.7
3,468,879	-		LRK54_RS15750	0.13	-0.4
3,468,879	-		LRK54_RS15750	0.13	-0.1
3,468,879	-		LRK54_RS15750	0.13	-1.3
3,468,879	-		LRK54_RS15750	0.13	+0.1
3,468,911	+		LRK54_RS15750	0.15	-0.3
3,468,911	+		LRK54_RS15750	0.15	+0.1
3,468,911	+		LRK54_RS15750	0.15	+0.2
3,468,911	+		LRK54_RS15750	0.15	-1.5
3,468,911	+		LRK54_RS15750	0.15	-0.2
3,468,911	+		LRK54_RS15750	0.15	-0.0
3,468,911	+		LRK54_RS15750	0.15	-1.3
3,468,911	+		LRK54_RS15750	0.15	-0.7
3,468,911	+		LRK54_RS15750	0.15	+0.2
3,468,911	+		LRK54_RS15750	0.15	-0.5
3,468,911	+		LRK54_RS15750	0.15	-0.6
3,468,911	+		LRK54_RS15750	0.15	-0.0
3,468,911	+		LRK54_RS15750	0.15	+2.1
3,468,911	+		LRK54_RS15750	0.15	+0.2
3,468,911	+		LRK54_RS15750	0.15	-0.4
3,468,911	+		LRK54_RS15750	0.15	+0.4
3,468,911	+		LRK54_RS15750	0.15	+3.3
3,468,911	+		LRK54_RS15750	0.15	+1.8
3,468,911	+		LRK54_RS15750	0.15	+2.7
3,468,911	+		LRK54_RS15750	0.15	-0.8
3,468,911	+		LRK54_RS15750	0.15	+0.3
3,468,912	-		LRK54_RS15750	0.15	-1.4
3,468,912	-		LRK54_RS15750	0.15	+0.1
3,468,912	-		LRK54_RS15750	0.15	-0.8
3,468,912	-		LRK54_RS15750	0.15	+1.2
3,468,912	-		LRK54_RS15750	0.15	+3.3
3,468,912	-		LRK54_RS15750	0.15	+0.2
3,468,912	-		LRK54_RS15750	0.15	-0.0
3,468,912	-		LRK54_RS15750	0.15	-1.2
3,468,912	-		LRK54_RS15750	0.15	+0.1
3,468,912	-		LRK54_RS15750	0.15	-1.1
3,468,912	-		LRK54_RS15750	0.15	+0.6
3,468,912	-		LRK54_RS15750	0.15	+0.6
3,468,912	-		LRK54_RS15750	0.15	-1.8
3,469,361	+		LRK54_RS15750	0.42	+0.5
3,469,361	+		LRK54_RS15750	0.42	-1.4
3,469,361	+		LRK54_RS15750	0.42	+0.5
3,469,361	+		LRK54_RS15750	0.42	-1.0
3,469,361	+		LRK54_RS15750	0.42	-1.3
3,469,361	+		LRK54_RS15750	0.42	-1.2
3,469,362	-		LRK54_RS15750	0.42	-1.4
3,469,362	-		LRK54_RS15750	0.42	+0.9
3,469,362	-		LRK54_RS15750	0.42	+0.0
3,469,362	-		LRK54_RS15750	0.42	-0.2
3,469,362	-		LRK54_RS15750	0.42	-0.7
3,469,362	-		LRK54_RS15750	0.42	-1.2
3,469,362	-		LRK54_RS15750	0.42	+0.6
3,469,362	-		LRK54_RS15750	0.42	-1.4
3,469,362	-		LRK54_RS15750	0.42	+0.1
3,469,362	-		LRK54_RS15750	0.42	+1.5
3,469,435	+		LRK54_RS15750	0.47	-0.1
3,469,435	+		LRK54_RS15750	0.47	-1.3
3,469,436	-		LRK54_RS15750	0.47	-0.7
3,469,436	-		LRK54_RS15750	0.47	+0.4
3,469,436	-		LRK54_RS15750	0.47	-0.5
3,469,436	-		LRK54_RS15750	0.47	-0.7
3,469,436	-		LRK54_RS15750	0.47	+1.2
3,469,550	+		LRK54_RS15750	0.54	-2.8
3,469,550	+		LRK54_RS15750	0.54	-0.3
3,469,550	+		LRK54_RS15750	0.54	+0.3
3,469,550	+		LRK54_RS15750	0.54	+0.9
3,469,550	+		LRK54_RS15750	0.54	-0.4
3,469,550	+		LRK54_RS15750	0.54	+0.3
3,469,550	+		LRK54_RS15750	0.54	-0.0
3,469,550	+		LRK54_RS15750	0.54	+0.3
3,469,550	+		LRK54_RS15750	0.54	+3.3
3,469,550	+		LRK54_RS15750	0.54	+0.5
3,469,550	+		LRK54_RS15750	0.54	+0.4
3,469,550	+		LRK54_RS15750	0.54	-0.3
3,469,550	+		LRK54_RS15750	0.54	+1.0
3,469,550	+		LRK54_RS15750	0.54	+0.0
3,469,550	+		LRK54_RS15750	0.54	-2.1
3,469,550	+		LRK54_RS15750	0.54	+2.1
3,469,550	+		LRK54_RS15750	0.54	+4.0
3,469,550	+		LRK54_RS15750	0.54	-1.4
3,469,550	+		LRK54_RS15750	0.54	+2.3
3,469,550	+		LRK54_RS15750	0.54	+0.1
3,469,550	+		LRK54_RS15750	0.54	-1.1
3,469,550	+		LRK54_RS15750	0.54	-2.2
3,469,550	+		LRK54_RS15750	0.54	-1.4
3,469,550	+		LRK54_RS15750	0.54	-2.6
3,469,551	-		LRK54_RS15750	0.54	-2.6
3,469,551	-		LRK54_RS15750	0.54	+0.2
3,469,551	-		LRK54_RS15750	0.54	-0.5
3,469,551	-		LRK54_RS15750	0.54	-1.5
3,469,551	-		LRK54_RS15750	0.54	-1.5
3,469,551	-		LRK54_RS15750	0.54	-1.0
3,469,551	-		LRK54_RS15750	0.54	-2.4
3,469,551	-		LRK54_RS15750	0.54	-0.9
3,469,551	-		LRK54_RS15750	0.54	-0.5
3,469,551	-		LRK54_RS15750	0.54	+0.5
3,469,551	-		LRK54_RS15750	0.54	+1.0
3,469,551	-		LRK54_RS15750	0.54	-0.4
3,469,551	-		LRK54_RS15750	0.54	+0.6
3,469,551	-		LRK54_RS15750	0.54	-0.2
3,469,551	-		LRK54_RS15750	0.54	+0.4
3,469,551	-		LRK54_RS15750	0.54	+0.6
3,469,551	-		LRK54_RS15750	0.54	-1.0
3,469,551	-		LRK54_RS15750	0.54	-0.6
3,469,551	-		LRK54_RS15750	0.54	-0.1
3,469,551	-		LRK54_RS15750	0.54	-1.3
3,469,551	-		LRK54_RS15750	0.54	-0.1
3,469,551	-		LRK54_RS15750	0.54	-0.7
3,469,551	-		LRK54_RS15750	0.54	-0.2
3,469,551	-		LRK54_RS15750	0.54	+0.0