Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13610

Experiment: planktonic; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM;
3,044,085	+				+0.9
3,044,085	+				-2.5
3,044,086	-				-1.2
3,044,130	+				-0.6
3,044,130	+				+1.1
3,044,130	+				+1.3
3,044,130	+				+0.1
3,044,130	+				-2.9
3,044,130	+				+0.3
3,044,130	+				+0.3
3,044,130	+				-1.7
3,044,130	+				-0.7
3,044,130	+				+0.9
3,044,130	+				-0.5
3,044,130	+				+0.3
3,044,130	+				-2.4
3,044,130	+				+0.3
3,044,130	+				-0.1
3,044,130	+				-0.3
3,044,130	+				+1.2
3,044,131	-				+0.9
3,044,131	-				-1.6
3,044,131	-				+2.3
3,044,131	-				-0.7
3,044,131	-				+0.9
3,044,131	-				-0.1
3,044,131	-				+1.2
3,044,131	-				-0.5
3,044,131	-				-1.0
3,044,131	-				-0.6
3,044,131	-				-0.5
3,044,131	-				-0.1
3,044,131	-				-0.9
3,044,131	-				-0.2
3,044,131	-				+0.1
3,044,131	-				+0.4
3,044,131	-				+0.2
3,044,131	-				+2.4
3,044,616	-		LRK54_RS13605	0.58	+0.6
3,044,616	-		LRK54_RS13605	0.58	+0.1
3,044,646	+		LRK54_RS13605	0.61	+0.9
3,044,646	+		LRK54_RS13605	0.61	+0.7
3,044,646	+		LRK54_RS13605	0.61	+0.5
3,044,647	-		LRK54_RS13605	0.61	+0.8
3,044,647	-		LRK54_RS13605	0.61	-0.1
3,044,647	-		LRK54_RS13605	0.61	+0.8
3,044,918	+		LRK54_RS13605	0.88	+0.5
3,044,918	+		LRK54_RS13605	0.88	-0.9
3,044,918	+		LRK54_RS13605	0.88	-2.8
3,044,918	+		LRK54_RS13605	0.88	+0.2
3,044,918	+		LRK54_RS13605	0.88	-2.1
3,044,918	+		LRK54_RS13605	0.88	-0.0
3,044,919	-		LRK54_RS13605	0.88	-0.9
3,044,919	-		LRK54_RS13605	0.88	-2.0
3,044,919	-		LRK54_RS13605	0.88	-1.6
3,044,919	-		LRK54_RS13605	0.88	-1.4
3,044,919	-		LRK54_RS13605	0.88	-1.5
3,044,919	-		LRK54_RS13605	0.88	-0.1
3,044,920	+		LRK54_RS13605	0.88	+2.4
3,044,920	+		LRK54_RS13605	0.88	-0.9
3,044,920	+		LRK54_RS13605	0.88	+0.3
3,044,920	+		LRK54_RS13605	0.88	-0.6
3,044,920	+		LRK54_RS13605	0.88	+0.3
3,044,920	+		LRK54_RS13605	0.88	-1.1
3,044,920	+		LRK54_RS13605	0.88	-0.3
3,044,920	+		LRK54_RS13605	0.88	+1.1
3,044,920	+		LRK54_RS13605	0.88	+0.4
3,044,920	+		LRK54_RS13605	0.88	+0.2
3,044,920	+		LRK54_RS13605	0.88	-0.3
3,044,920	+		LRK54_RS13605	0.88	-0.0
3,044,920	+		LRK54_RS13605	0.88	+0.2
3,044,920	+		LRK54_RS13605	0.88	-0.1
3,044,920	+		LRK54_RS13605	0.88	+1.7
3,044,920	+		LRK54_RS13605	0.88	-1.1
3,044,920	+		LRK54_RS13605	0.88	-0.2
3,044,920	+		LRK54_RS13605	0.88	-0.0
3,044,921	-		LRK54_RS13605	0.88	-0.6
3,044,921	-		LRK54_RS13605	0.88	-1.5
3,044,921	-		LRK54_RS13605	0.88	-0.4
3,044,921	-		LRK54_RS13605	0.88	+0.8
3,044,921	-		LRK54_RS13605	0.88	+0.1
3,044,921	-		LRK54_RS13605	0.88	-0.9
3,044,921	-		LRK54_RS13605	0.88	+0.7
3,044,921	-		LRK54_RS13605	0.88	-1.0
3,044,921	-		LRK54_RS13605	0.88	-1.5
3,044,921	-		LRK54_RS13605	0.88	+0.3
3,044,921	-		LRK54_RS13605	0.88	-0.6
3,044,921	-		LRK54_RS13605	0.88	+0.3
3,044,921	-		LRK54_RS13605	0.88	-0.3
3,044,921	-		LRK54_RS13605	0.88	-1.1
3,044,921	-		LRK54_RS13605	0.88	-0.6
3,044,921	-		LRK54_RS13605	0.88	-0.5
3,044,921	-		LRK54_RS13605	0.88	-1.6
3,044,921	-		LRK54_RS13605	0.88	-0.8
3,044,921	-		LRK54_RS13605	0.88	-1.5
3,044,921	-		LRK54_RS13605	0.88	-1.1
3,044,921	-		LRK54_RS13605	0.88	+0.4
3,044,921	-		LRK54_RS13605	0.88	-0.3
3,044,921	-		LRK54_RS13605	0.88	-0.3
3,044,921	-		LRK54_RS13605	0.88	-0.9
3,045,069	+				+0.1
3,045,069	+				-0.8
3,045,069	+				+1.1
3,045,069	+				-1.8
3,045,069	+				+0.4
3,045,069	+				-1.4
3,045,069	+				+0.5
3,045,070	-				+1.3
3,045,070	-				-0.8
3,045,070	-				-0.6
3,045,070	-				+0.1
3,045,070	-				-1.6
3,045,070	-				-1.7
3,045,070	-				-0.4
3,045,070	-				+1.0
3,045,148	+		LRK54_RS13610	0.15	-1.1
3,045,148	+		LRK54_RS13610	0.15	-1.7
3,045,148	+		LRK54_RS13610	0.15	-1.0
3,045,148	+		LRK54_RS13610	0.15	-0.8
3,045,148	+		LRK54_RS13610	0.15	-1.8
3,045,148	+		LRK54_RS13610	0.15	-0.1
3,045,148	+		LRK54_RS13610	0.15	-0.6
3,045,148	+		LRK54_RS13610	0.15	-0.3
3,045,148	+		LRK54_RS13610	0.15	-0.7
3,045,148	+		LRK54_RS13610	0.15	-1.4
3,045,149	-		LRK54_RS13610	0.15	+0.3
3,045,149	-		LRK54_RS13610	0.15	-0.4
3,045,149	-		LRK54_RS13610	0.15	-2.0
3,045,149	-		LRK54_RS13610	0.15	-1.0
3,045,149	-		LRK54_RS13610	0.15	+0.1
3,045,149	-		LRK54_RS13610	0.15	-1.0
3,045,149	-		LRK54_RS13610	0.15	-0.1
3,045,149	-		LRK54_RS13610	0.15	-0.8
3,045,149	-		LRK54_RS13610	0.15	-0.9
3,045,149	-		LRK54_RS13610	0.15	-2.2
3,045,149	-		LRK54_RS13610	0.15	-2.4
3,045,149	-		LRK54_RS13610	0.15	-0.5
3,045,674	+		LRK54_RS13615	0.36	+0.1
3,045,674	+		LRK54_RS13615	0.36	+0.0
3,045,674	+		LRK54_RS13615	0.36	-1.3
3,045,674	+		LRK54_RS13615	0.36	-0.5
3,045,675	-		LRK54_RS13615	0.37	+0.1
3,045,675	-		LRK54_RS13615	0.37	-1.1
3,045,675	-		LRK54_RS13615	0.37	-1.3
3,045,675	-		LRK54_RS13615	0.37	-0.3
3,045,682	+		LRK54_RS13615	0.39	+0.8
3,045,682	+		LRK54_RS13615	0.39	-1.5
3,045,682	+		LRK54_RS13615	0.39	+0.1
3,045,683	-		LRK54_RS13615	0.39	+0.0
3,045,683	-		LRK54_RS13615	0.39	-0.1
3,045,683	-		LRK54_RS13615	0.39	+1.1
3,045,779	+		LRK54_RS13615	0.66	+0.3
3,045,779	+		LRK54_RS13615	0.66	-0.6
3,045,779	+		LRK54_RS13615	0.66	+0.5
3,045,779	+		LRK54_RS13615	0.66	-2.1
3,045,780	-		LRK54_RS13615	0.66	+0.9
3,045,780	-		LRK54_RS13615	0.66	+0.6
3,045,780	-		LRK54_RS13615	0.66	+0.3
3,045,780	-		LRK54_RS13615	0.66	-1.4
3,045,780	-		LRK54_RS13615	0.66	-0.5
3,045,780	-		LRK54_RS13615	0.66	+0.5
3,045,954	+				+2.0
3,045,955	-				+0.5
3,045,987	+		LRK54_RS13620	0.20	-0.6
3,045,988	-		LRK54_RS13620	0.21	+0.1
3,045,988	-		LRK54_RS13620	0.21	+0.3
3,045,988	-		LRK54_RS13620	0.21	-0.8
3,045,988	-		LRK54_RS13620	0.21	-1.4