Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04790

Experiment: planktonic; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM;
1,016,728	+		LRK54_RS04780	0.39	-0.9
1,016,728	+		LRK54_RS04780	0.39	+0.2
1,016,728	+		LRK54_RS04780	0.39	+1.3
1,016,728	+		LRK54_RS04780	0.39	+0.6
1,016,729	-		LRK54_RS04780	0.39	-1.1
1,016,729	-		LRK54_RS04780	0.39	+1.3
1,016,729	-		LRK54_RS04780	0.39	-1.6
1,016,783	-		LRK54_RS04780	0.49	+2.0
1,017,118	+				-0.5
1,017,118	+				+0.4
1,017,118	+				+0.4
1,017,118	+				+0.0
1,017,118	+				-1.0
1,017,118	+				+0.1
1,017,118	+				-2.8
1,017,119	-				-1.2
1,017,119	-				-1.8
1,017,119	-				-0.1
1,017,119	-				+0.7
1,017,119	-				-0.4
1,017,119	-				+0.2
1,017,178	+		LRK54_RS04785	0.16	-0.9
1,017,178	+		LRK54_RS04785	0.16	-0.5
1,017,179	-		LRK54_RS04785	0.16	-1.3
1,017,179	-		LRK54_RS04785	0.16	-1.4
1,017,193	+		LRK54_RS04785	0.18	+1.0
1,017,193	+		LRK54_RS04785	0.18	+0.3
1,017,193	+		LRK54_RS04785	0.18	-0.2
1,017,194	-		LRK54_RS04785	0.18	+1.5
1,017,303	+		LRK54_RS04785	0.36	+0.4
1,017,303	+		LRK54_RS04785	0.36	-0.5
1,017,303	+		LRK54_RS04785	0.36	-2.5
1,017,303	+		LRK54_RS04785	0.36	-0.2
1,017,304	-		LRK54_RS04785	0.37	+0.0
1,017,304	-		LRK54_RS04785	0.37	+1.6
1,017,304	-		LRK54_RS04785	0.37	-1.0
1,017,304	-		LRK54_RS04785	0.37	+0.6
1,017,304	-		LRK54_RS04785	0.37	-0.7
1,017,417	+		LRK54_RS04785	0.56	-0.7
1,017,417	+		LRK54_RS04785	0.56	+0.4
1,017,417	+		LRK54_RS04785	0.56	+0.1
1,017,417	+		LRK54_RS04785	0.56	+0.3
1,017,417	+		LRK54_RS04785	0.56	+0.1
1,017,417	+		LRK54_RS04785	0.56	+1.0
1,017,417	+		LRK54_RS04785	0.56	-0.5
1,017,417	+		LRK54_RS04785	0.56	+0.9
1,017,417	+		LRK54_RS04785	0.56	-0.2
1,017,417	+		LRK54_RS04785	0.56	-0.9
1,017,417	+		LRK54_RS04785	0.56	+0.1
1,017,418	-		LRK54_RS04785	0.56	+0.7
1,017,418	-		LRK54_RS04785	0.56	+1.4
1,017,418	-		LRK54_RS04785	0.56	+1.2
1,017,418	-		LRK54_RS04785	0.56	+0.3
1,017,418	-		LRK54_RS04785	0.56	-0.8
1,017,418	-		LRK54_RS04785	0.56	+0.7
1,017,418	-		LRK54_RS04785	0.56	-1.0
1,017,418	-		LRK54_RS04785	0.56	+1.7
1,017,418	-		LRK54_RS04785	0.56	-1.4
1,017,418	-		LRK54_RS04785	0.56	-0.0
1,017,418	-		LRK54_RS04785	0.56	+0.8
1,017,418	-		LRK54_RS04785	0.56	-1.0
1,017,418	-		LRK54_RS04785	0.56	+2.5
1,017,418	-		LRK54_RS04785	0.56	-0.4
1,017,418	-		LRK54_RS04785	0.56	-0.8
1,017,418	-		LRK54_RS04785	0.56	-0.1
1,017,418	-		LRK54_RS04785	0.56	-0.3
1,017,418	-		LRK54_RS04785	0.56	-1.3
1,017,418	-		LRK54_RS04785	0.56	+1.0
1,017,420	+		LRK54_RS04785	0.56	+0.4
1,017,420	+		LRK54_RS04785	0.56	-0.8
1,017,420	+		LRK54_RS04785	0.56	-0.8
1,017,420	+		LRK54_RS04785	0.56	-0.7
1,017,420	+		LRK54_RS04785	0.56	+0.6
1,017,420	+		LRK54_RS04785	0.56	-1.2
1,017,421	-		LRK54_RS04785	0.56	+0.7
1,017,421	-		LRK54_RS04785	0.56	+1.1
1,017,421	-		LRK54_RS04785	0.56	+0.6
1,017,421	-		LRK54_RS04785	0.56	-0.6
1,017,421	-		LRK54_RS04785	0.56	-0.1
1,017,421	-		LRK54_RS04785	0.56	+0.1
1,017,651	+				+1.0
1,017,651	+				-1.4
1,017,651	+				+1.4
1,017,651	+				-0.8
1,017,651	+				-0.4
1,017,651	+				-0.9
1,017,651	+				-2.0
1,017,651	+				-0.6
1,017,651	+				+0.1
1,017,651	+				-1.9
1,017,652	-				-0.4
1,017,652	-				-1.1
1,017,652	-				-0.1
1,017,652	-				+0.9
1,017,652	-				-0.2
1,017,652	-				+2.3
1,017,652	-				+0.2
1,017,718	-				-0.6
1,017,942	+		LRK54_RS04790	0.44	-0.3
1,017,942	+		LRK54_RS04790	0.44	-1.5
1,017,942	+		LRK54_RS04790	0.44	-0.5
1,017,943	-		LRK54_RS04790	0.44	+0.0
1,017,943	-		LRK54_RS04790	0.44	-0.5
1,017,943	-		LRK54_RS04790	0.44	+0.3
1,017,954	+		LRK54_RS04790	0.46	-1.0
1,017,954	+		LRK54_RS04790	0.46	-1.9
1,017,954	+		LRK54_RS04790	0.46	-0.3
1,017,954	+		LRK54_RS04790	0.46	-0.7
1,017,955	-		LRK54_RS04790	0.47	-0.7
1,018,395	+		LRK54_RS04795	0.50	+1.4
1,018,395	+		LRK54_RS04795	0.50	-0.5
1,018,395	+		LRK54_RS04795	0.50	-1.4
1,018,395	+		LRK54_RS04795	0.50	+1.0
1,018,395	+		LRK54_RS04795	0.50	-0.1
1,018,395	+		LRK54_RS04795	0.50	-0.6
1,018,395	+		LRK54_RS04795	0.50	-0.4
1,018,395	+		LRK54_RS04795	0.50	+0.4
1,018,395	+		LRK54_RS04795	0.50	-0.8
1,018,395	+		LRK54_RS04795	0.50	-1.8
1,018,395	+		LRK54_RS04795	0.50	+0.5
1,018,395	+		LRK54_RS04795	0.50	-1.7
1,018,395	+		LRK54_RS04795	0.50	-0.3
1,018,395	+		LRK54_RS04795	0.50	-0.3
1,018,395	+		LRK54_RS04795	0.50	+1.0
1,018,395	+		LRK54_RS04795	0.50	-1.6
1,018,395	+		LRK54_RS04795	0.50	-1.3
1,018,395	+		LRK54_RS04795	0.50	+1.2
1,018,395	+		LRK54_RS04795	0.50	-1.6
1,018,395	+		LRK54_RS04795	0.50	-0.3
1,018,395	+		LRK54_RS04795	0.50	-0.5
1,018,395	+		LRK54_RS04795	0.50	-0.7
1,018,395	+		LRK54_RS04795	0.50	-1.7
1,018,396	-		LRK54_RS04795	0.50	+1.0
1,018,396	-		LRK54_RS04795	0.50	+0.3
1,018,396	-		LRK54_RS04795	0.50	-0.2
1,018,396	-		LRK54_RS04795	0.50	+0.3
1,018,396	-		LRK54_RS04795	0.50	+0.2
1,018,396	-		LRK54_RS04795	0.50	-2.0
1,018,396	-		LRK54_RS04795	0.50	-0.6
1,018,396	-		LRK54_RS04795	0.50	+0.1
1,018,396	-		LRK54_RS04795	0.50	+0.5
1,018,396	-		LRK54_RS04795	0.50	+0.1
1,018,396	-		LRK54_RS04795	0.50	+0.4
1,018,396	-		LRK54_RS04795	0.50	+0.5
1,018,396	-		LRK54_RS04795	0.50	-0.5
1,018,396	-		LRK54_RS04795	0.50	-0.7
1,018,396	-		LRK54_RS04795	0.50	+0.8
1,018,396	-		LRK54_RS04795	0.50	+1.2
1,018,396	-		LRK54_RS04795	0.50	+0.6
1,018,396	-		LRK54_RS04795	0.50	-1.1
1,018,396	-		LRK54_RS04795	0.50	+0.0
1,018,396	-		LRK54_RS04795	0.50	-2.0
1,018,396	-		LRK54_RS04795	0.50	+0.3
1,018,396	-		LRK54_RS04795	0.50	-0.5
1,018,396	-		LRK54_RS04795	0.50	-0.1
1,018,396	-		LRK54_RS04795	0.50	-0.2
1,018,396	-		LRK54_RS04795	0.50	-1.9
1,018,434	+		LRK54_RS04795	0.64	-2.3
1,018,434	+		LRK54_RS04795	0.64	+0.8
1,018,434	+		LRK54_RS04795	0.64	-0.6
1,018,434	+		LRK54_RS04795	0.64	-1.3
1,018,435	-		LRK54_RS04795	0.64	-0.5
1,018,435	-		LRK54_RS04795	0.64	-0.3
1,018,435	-		LRK54_RS04795	0.64	-0.3
1,018,518	+				-2.4
1,018,596	+				-0.3
1,018,596	+				+0.2
1,018,596	+				-0.2
1,018,596	+				-1.6
1,018,596	+				-0.2
1,018,597	-				-1.2
1,018,597	-				-0.6
1,018,597	-				+1.0
1,018,597	-				-0.2
1,018,597	-				+0.9