Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13415

Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Aluminum chloride 1mM
3,004,941	+				+1.7
3,004,941	+				+1.5
3,004,941	+				+1.5
3,004,941	+				+1.7
3,004,941	+				+2.7
3,004,941	+				+1.6
3,004,941	+				+1.1
3,004,941	+				+2.3
3,004,941	+				+0.5
3,004,941	+				+0.9
3,004,941	+				+1.9
3,004,941	+				+1.3
3,004,941	+				+2.3
3,004,941	+				+1.8
3,004,941	+				+1.3
3,004,941	+				+1.9
3,004,941	+				+1.1
3,004,941	+				+3.1
3,004,941	+				+1.6
3,004,941	+				+1.3
3,004,941	+				+1.1
3,004,941	+				-0.0
3,004,941	+				+0.9
3,004,941	+				+1.2
3,004,941	+				+1.7
3,004,941	+				+3.2
3,004,941	+				-0.1
3,004,941	+				+1.3
3,004,942	-				+1.2
3,004,942	-				+0.9
3,004,942	-				+1.3
3,004,942	-				+0.3
3,004,942	-				+0.6
3,004,942	-				+2.4
3,004,942	-				-0.2
3,004,942	-				+0.4
3,004,942	-				+1.6
3,004,942	-				+0.6
3,004,942	-				+1.9
3,004,942	-				+1.2
3,004,942	-				+2.7
3,004,942	-				+0.7
3,004,942	-				+1.4
3,004,942	-				+2.4
3,004,942	-				+1.1
3,004,942	-				+0.7
3,004,942	-				+2.9
3,004,942	-				+0.5
3,004,942	-				+0.7
3,004,942	-				+0.8
3,004,942	-				+1.7
3,004,942	-				+0.6
3,004,942	-				+2.0
3,004,942	-				-0.1
3,004,942	-				+2.7
3,004,942	-				+0.9
3,004,942	-				+0.9
3,004,942	-				+0.9
3,004,942	-				-0.8
3,004,945	+				-0.7
3,004,945	+				+1.1
3,004,945	+				+1.8
3,004,945	+				+1.6
3,004,945	+				+1.4
3,004,945	+				+1.4
3,004,945	+				+0.3
3,004,945	+				-0.5
3,004,945	+				+0.3
3,004,945	+				+0.7
3,004,945	+				-0.7
3,004,945	+				+1.1
3,004,945	+				+2.4
3,004,945	+				+0.5
3,004,945	+				+1.0
3,004,945	+				+0.8
3,004,945	+				+1.0
3,004,945	+				+0.5
3,004,945	+				+1.5
3,004,945	+				-0.5
3,004,945	+				+3.4
3,004,945	+				+0.4
3,004,945	+				+1.3
3,004,945	+				+1.4
3,004,945	-				+1.5
3,004,946	-				+1.7
3,004,946	-				+2.3
3,004,946	-				+1.5
3,004,946	-				+2.5
3,004,946	-				+1.5
3,004,946	-				-0.5
3,004,946	-				+0.0
3,004,946	-				+1.4
3,004,946	-				+0.4
3,004,946	-				+0.6
3,004,946	-				+1.7
3,004,946	-				+1.0
3,004,946	-				+0.7
3,004,946	-				-1.5
3,004,946	-				+0.6
3,004,946	-				+1.7
3,004,946	-				+0.8
3,004,946	-				+2.3
3,004,946	-				+3.5
3,004,946	-				-0.6
3,004,946	-				+0.9
3,004,946	-				+0.6
3,004,946	-				+0.9
3,004,946	-				+3.1
3,004,946	-				-1.5
3,004,946	-				+2.3
3,004,946	-				-0.5
3,004,946	-				+1.6
3,004,946	-				+1.7
3,004,946	-				+1.2
3,004,946	-				+2.8
3,005,012	-		LRK54_RS13405	0.25	+2.3
3,005,012	-		LRK54_RS13405	0.25	-1.5
3,005,021	+		LRK54_RS13405	0.27	+1.8
3,005,021	+		LRK54_RS13405	0.27	+1.3
3,005,022	-		LRK54_RS13405	0.28	+3.1
3,005,153	+		LRK54_RS13405	0.60	+2.8
3,005,153	+		LRK54_RS13405	0.60	+0.2
3,005,240	+		LRK54_RS13405	0.81	+1.0
3,005,240	+		LRK54_RS13405	0.81	+2.4
3,005,240	+		LRK54_RS13405	0.81	+0.5
3,005,241	-		LRK54_RS13405	0.82	+1.5
3,005,241	-		LRK54_RS13405	0.82	+1.2
3,005,385	-		LRK54_RS13410	0.17	-0.2
3,005,437	+		LRK54_RS13410	0.29	+1.5
3,005,437	+		LRK54_RS13410	0.29	+0.9
3,005,437	+		LRK54_RS13410	0.29	+0.9
3,005,557	+		LRK54_RS13410	0.58	-0.3
3,005,558	-		LRK54_RS13410	0.59	+1.4
3,005,593	+		LRK54_RS13410	0.67	+1.3
3,005,593	+		LRK54_RS13410	0.67	+1.1
3,005,593	+		LRK54_RS13410	0.67	+2.4
3,005,593	+		LRK54_RS13410	0.67	+0.3
3,005,594	-		LRK54_RS13410	0.67	+1.4
3,005,594	-		LRK54_RS13410	0.67	+1.2
3,005,594	-		LRK54_RS13410	0.67	+1.3
3,005,594	-		LRK54_RS13410	0.67	+1.1
3,005,594	-		LRK54_RS13410	0.67	+0.1
3,005,599	+		LRK54_RS13410	0.68	+2.1
3,005,599	+		LRK54_RS13410	0.68	-0.7
3,005,599	+		LRK54_RS13410	0.68	+1.4
3,005,599	+		LRK54_RS13410	0.68	-0.0
3,005,599	+		LRK54_RS13410	0.68	+0.5
3,005,599	+		LRK54_RS13410	0.68	+2.1
3,005,599	+		LRK54_RS13410	0.68	+0.8
3,005,600	-		LRK54_RS13410	0.69	+0.6
3,005,600	-		LRK54_RS13410	0.69	+1.5
3,005,600	-		LRK54_RS13410	0.69	-2.6
3,005,600	-		LRK54_RS13410	0.69	+1.3
3,005,600	-		LRK54_RS13410	0.69	+0.6
3,005,600	-		LRK54_RS13410	0.69	+0.8
3,005,600	-		LRK54_RS13410	0.69	+1.0
3,005,600	-		LRK54_RS13410	0.69	+2.2
3,005,600	-		LRK54_RS13410	0.69	+1.4
3,005,600	-		LRK54_RS13410	0.69	+1.1
3,005,659	+		LRK54_RS13410	0.83	-0.6
3,005,660	-		LRK54_RS13410	0.83	+1.7
3,006,251	+		LRK54_RS13415	0.76	-0.9
3,006,251	+		LRK54_RS13415	0.76	-0.5
3,006,251	+		LRK54_RS13415	0.76	-0.7
3,006,251	+		LRK54_RS13415	0.76	-2.3
3,006,251	+		LRK54_RS13415	0.76	-2.5
3,006,251	+		LRK54_RS13415	0.76	+0.5
3,006,251	+		LRK54_RS13415	0.76	+1.2
3,006,251	+		LRK54_RS13415	0.76	-0.9
3,006,251	+		LRK54_RS13415	0.76	-0.7
3,006,252	-		LRK54_RS13415	0.76	+2.1
3,006,252	-		LRK54_RS13415	0.76	+0.2
3,006,252	-		LRK54_RS13415	0.76	+1.8
3,006,252	-		LRK54_RS13415	0.76	+0.7
3,006,252	-		LRK54_RS13415	0.76	+0.6
3,006,252	-		LRK54_RS13415	0.76	+1.5
3,006,277	+		LRK54_RS13415	0.80	-0.4
3,006,278	-		LRK54_RS13415	0.80	+1.6
3,006,293	+		LRK54_RS13415	0.83	-0.0
3,006,293	+		LRK54_RS13415	0.83	+0.7
3,006,293	+		LRK54_RS13415	0.83	+0.2
3,006,293	+		LRK54_RS13415	0.83	-1.1
3,006,293	+		LRK54_RS13415	0.83	+0.3
3,006,294	-		LRK54_RS13415	0.83	+0.8
3,006,294	-		LRK54_RS13415	0.83	+1.5
3,006,294	-		LRK54_RS13415	0.83	+0.8
3,006,294	-		LRK54_RS13415	0.83	+2.4
3,006,294	-		LRK54_RS13415	0.83	+2.4
3,006,294	-		LRK54_RS13415	0.83	+1.3
3,006,294	-		LRK54_RS13415	0.83	+1.4
3,006,294	-		LRK54_RS13415	0.83	+0.5
3,006,344	+				+0.1
3,006,344	+				+1.5
3,006,344	+				+1.8
3,006,344	+				-0.5
3,006,344	+				-0.1
3,006,345	-				+1.3
3,006,345	-				+1.3
3,006,345	-				+1.6
3,006,345	-				+0.8
3,006,435	+				+0.6
3,006,435	+				+2.3
3,006,435	+				+1.4
3,006,435	+				+1.5
3,006,671	+		LRK54_RS13420	0.19	+1.1
3,006,672	-		LRK54_RS13420	0.19	-0.6
3,006,672	-		LRK54_RS13420	0.19	+1.6
3,006,732	+		LRK54_RS13420	0.24	+1.8
3,006,732	+		LRK54_RS13420	0.24	+1.8
3,006,738	+		LRK54_RS13420	0.24	+2.4
3,006,738	+		LRK54_RS13420	0.24	+0.7
3,006,738	+		LRK54_RS13420	0.24	+1.7
3,006,738	+		LRK54_RS13420	0.24	+0.5
3,006,738	+		LRK54_RS13420	0.24	+1.0
3,006,738	+		LRK54_RS13420	0.24	+1.7
3,006,738	+		LRK54_RS13420	0.24	+0.6
3,006,738	+		LRK54_RS13420	0.24	+1.6
3,006,738	+		LRK54_RS13420	0.24	+2.0
3,006,739	-		LRK54_RS13420	0.24	+1.0
3,006,739	-		LRK54_RS13420	0.24	+0.4
3,006,739	-		LRK54_RS13420	0.24	+1.4
3,006,739	-		LRK54_RS13420	0.24	+2.1
3,006,739	-		LRK54_RS13420	0.24	+2.4
3,006,739	-		LRK54_RS13420	0.24	+1.8
3,006,739	-		LRK54_RS13420	0.24	+1.2
3,006,739	-		LRK54_RS13420	0.24	+1.2
3,006,739	-		LRK54_RS13420	0.24	+1.5
3,006,778	-		LRK54_RS13420	0.28	+0.2
3,006,778	-		LRK54_RS13420	0.28	+4.9
3,006,984	+		LRK54_RS13420	0.44	+0.9
3,006,984	+		LRK54_RS13420	0.44	-0.1
3,006,984	+		LRK54_RS13420	0.44	+1.1
3,006,984	+		LRK54_RS13420	0.44	+0.2
3,006,984	+		LRK54_RS13420	0.44	+1.6
3,006,984	+		LRK54_RS13420	0.44	+0.4
3,006,984	+		LRK54_RS13420	0.44	+3.6
3,006,985	-		LRK54_RS13420	0.44	+1.7
3,006,985	-		LRK54_RS13420	0.44	-0.0
3,006,985	-		LRK54_RS13420	0.44	+2.7
3,006,985	-		LRK54_RS13420	0.44	+1.1
3,006,985	-		LRK54_RS13420	0.44	+1.8
3,006,985	-		LRK54_RS13420	0.44	+1.2
3,006,985	-		LRK54_RS13420	0.44	+1.3
3,006,985	-		LRK54_RS13420	0.44	+1.3
3,006,985	-		LRK54_RS13420	0.44	+0.8
3,007,011	+		LRK54_RS13420	0.47	+0.7
3,007,012	-		LRK54_RS13420	0.47	+1.0
3,007,012	-		LRK54_RS13420	0.47	+2.0
3,007,012	-		LRK54_RS13420	0.47	+1.6
3,007,012	-		LRK54_RS13420	0.47	+1.6
3,007,012	-		LRK54_RS13420	0.47	-0.2
3,007,012	-		LRK54_RS13420	0.47	+3.1
3,007,012	-		LRK54_RS13420	0.47	+1.5
3,007,047	+		LRK54_RS13420	0.50	+0.8
3,007,047	+		LRK54_RS13420	0.50	+1.8
3,007,048	-		LRK54_RS13420	0.50	+1.1
3,007,048	-		LRK54_RS13420	0.50	+0.7
3,007,048	-		LRK54_RS13420	0.50	+1.7
3,007,048	-		LRK54_RS13420	0.50	+2.2
3,007,048	-		LRK54_RS13420	0.50	+2.1
3,007,048	-		LRK54_RS13420	0.50	+1.0
3,007,092	+		LRK54_RS13420	0.53	+1.6
3,007,092	+		LRK54_RS13420	0.53	+1.0
3,007,092	+		LRK54_RS13420	0.53	+1.5
3,007,092	+		LRK54_RS13420	0.53	+1.0
3,007,092	+		LRK54_RS13420	0.53	+0.6
3,007,092	+		LRK54_RS13420	0.53	+2.7
3,007,092	+		LRK54_RS13420	0.53	+1.6
3,007,092	+		LRK54_RS13420	0.53	+0.8
3,007,092	+		LRK54_RS13420	0.53	+1.4
3,007,092	+		LRK54_RS13420	0.53	+0.4
3,007,093	-		LRK54_RS13420	0.53	+1.1
3,007,093	-		LRK54_RS13420	0.53	+1.5
3,007,093	-		LRK54_RS13420	0.53	+1.4
3,007,093	-		LRK54_RS13420	0.53	+0.2
3,007,093	-		LRK54_RS13420	0.53	-1.3
3,007,093	-		LRK54_RS13420	0.53	+0.8
3,007,093	-		LRK54_RS13420	0.53	+1.2
3,007,093	-		LRK54_RS13420	0.53	+0.3
3,007,093	-		LRK54_RS13420	0.53	+1.3
3,007,093	-		LRK54_RS13420	0.53	+0.7
3,007,093	-		LRK54_RS13420	0.53	-0.1
3,007,093	-		LRK54_RS13420	0.53	+1.9
3,007,094	+		LRK54_RS13420	0.53	-0.2
3,007,267	-		LRK54_RS13420	0.67	+1.3
3,007,267	-		LRK54_RS13420	0.67	+3.0
3,007,356	+		LRK54_RS13420	0.75	-0.5
3,007,356	+		LRK54_RS13420	0.75	+0.5
3,007,356	+		LRK54_RS13420	0.75	+0.3
3,007,356	+		LRK54_RS13420	0.75	+1.6
3,007,356	+		LRK54_RS13420	0.75	+1.1
3,007,356	+		LRK54_RS13420	0.75	+0.0
3,007,356	+		LRK54_RS13420	0.75	+0.9
3,007,357	-		LRK54_RS13420	0.75	+1.7
3,007,357	-		LRK54_RS13420	0.75	+1.8
3,007,357	-		LRK54_RS13420	0.75	+1.4
3,007,357	-		LRK54_RS13420	0.75	+0.7
3,007,357	-		LRK54_RS13420	0.75	-0.0