Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08220

Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day2; NLDM; Aluminum chloride 1mM
1,796,295	+		LRK54_RS08210	0.36	+0.3
1,796,295	+		LRK54_RS08210	0.36	-0.3
1,796,295	+		LRK54_RS08210	0.36	-0.2
1,796,295	+		LRK54_RS08210	0.36	+1.3
1,796,295	+		LRK54_RS08210	0.36	+0.2
1,796,295	+		LRK54_RS08210	0.36	-0.9
1,796,295	+		LRK54_RS08210	0.36	-0.3
1,796,295	+		LRK54_RS08210	0.36	-0.1
1,796,295	+		LRK54_RS08210	0.36	-0.3
1,796,295	+		LRK54_RS08210	0.36	+1.4
1,796,295	+		LRK54_RS08210	0.36	+1.2
1,796,296	-		LRK54_RS08210	0.36	-1.3
1,796,296	-		LRK54_RS08210	0.36	-0.2
1,796,296	-		LRK54_RS08210	0.36	-0.2
1,796,296	-		LRK54_RS08210	0.36	-0.5
1,796,296	-		LRK54_RS08210	0.36	-0.6
1,796,296	-		LRK54_RS08210	0.36	-0.2
1,796,296	-		LRK54_RS08210	0.36	+1.1
1,796,296	-		LRK54_RS08210	0.36	+1.3
1,796,296	-		LRK54_RS08210	0.36	-0.0
1,796,296	-		LRK54_RS08210	0.36	+0.3
1,796,296	-		LRK54_RS08210	0.36	-0.7
1,796,296	-		LRK54_RS08210	0.36	-0.8
1,796,296	-		LRK54_RS08210	0.36	-0.2
1,796,328	+		LRK54_RS08210	0.40	-1.1
1,796,328	+		LRK54_RS08210	0.40	-3.2
1,796,328	+		LRK54_RS08210	0.40	+0.3
1,796,329	-		LRK54_RS08210	0.40	-0.6
1,796,329	-		LRK54_RS08210	0.40	-0.5
1,796,329	-		LRK54_RS08210	0.40	-0.6
1,796,329	-		LRK54_RS08210	0.40	-0.5
1,796,329	-		LRK54_RS08210	0.40	-0.8
1,796,329	-		LRK54_RS08210	0.40	-0.7
1,796,329	-		LRK54_RS08210	0.40	-2.0
1,796,329	-		LRK54_RS08210	0.40	+1.6
1,796,329	-		LRK54_RS08210	0.40	-0.9
1,796,329	-		LRK54_RS08210	0.40	-1.6
1,796,364	+		LRK54_RS08210	0.44	+0.3
1,796,365	-		LRK54_RS08210	0.44	+0.2
1,796,365	-		LRK54_RS08210	0.44	+0.4
1,796,365	-		LRK54_RS08210	0.44	-1.3
1,796,373	+		LRK54_RS08210	0.45	+0.0
1,796,373	+		LRK54_RS08210	0.45	-0.2
1,796,373	+		LRK54_RS08210	0.45	-1.5
1,796,373	+		LRK54_RS08210	0.45	-0.5
1,796,373	+		LRK54_RS08210	0.45	-0.1
1,796,373	+		LRK54_RS08210	0.45	-2.9
1,796,373	+		LRK54_RS08210	0.45	-1.9
1,796,373	+		LRK54_RS08210	0.45	-1.6
1,796,373	+		LRK54_RS08210	0.45	+0.2
1,796,374	-		LRK54_RS08210	0.45	-1.2
1,796,374	-		LRK54_RS08210	0.45	-1.0
1,796,374	-		LRK54_RS08210	0.45	+1.7
1,796,374	-		LRK54_RS08210	0.45	+0.8
1,796,374	-		LRK54_RS08210	0.45	+0.9
1,796,374	-		LRK54_RS08210	0.45	+0.1
1,796,374	-		LRK54_RS08210	0.45	-0.8
1,796,374	-		LRK54_RS08210	0.45	+0.2
1,796,374	-		LRK54_RS08210	0.45	+0.0
1,796,374	-		LRK54_RS08210	0.45	-2.1
1,796,374	-		LRK54_RS08210	0.45	+0.0
1,796,374	-		LRK54_RS08210	0.45	-0.4
1,796,374	-		LRK54_RS08210	0.45	-0.3
1,796,394	+		LRK54_RS08210	0.48	+0.6
1,796,394	+		LRK54_RS08210	0.48	+1.3
1,796,394	+		LRK54_RS08210	0.48	+0.2
1,796,395	-		LRK54_RS08210	0.48	+1.7
1,796,482	-		LRK54_RS08210	0.58	-0.8
1,796,482	-		LRK54_RS08210	0.58	-0.7
1,796,523	+		LRK54_RS08210	0.62	+1.4
1,796,523	+		LRK54_RS08210	0.62	-1.2
1,796,523	+		LRK54_RS08210	0.62	-0.5
1,796,523	+		LRK54_RS08210	0.62	-2.3
1,796,523	+		LRK54_RS08210	0.62	+0.6
1,796,523	+		LRK54_RS08210	0.62	-0.3
1,796,523	+		LRK54_RS08210	0.62	-0.5
1,796,523	+		LRK54_RS08210	0.62	+0.4
1,796,523	+		LRK54_RS08210	0.62	-0.4
1,796,523	+		LRK54_RS08210	0.62	+2.2
1,796,523	+		LRK54_RS08210	0.62	-0.4
1,796,523	+		LRK54_RS08210	0.62	-0.6
1,796,523	+		LRK54_RS08210	0.62	-1.7
1,796,523	+		LRK54_RS08210	0.62	-1.1
1,796,523	+		LRK54_RS08210	0.62	-0.3
1,796,523	+		LRK54_RS08210	0.62	+0.1
1,796,523	+		LRK54_RS08210	0.62	-0.8
1,796,523	+		LRK54_RS08210	0.62	-0.1
1,796,523	+		LRK54_RS08210	0.62	+0.7
1,796,523	+		LRK54_RS08210	0.62	-0.5
1,796,523	+		LRK54_RS08210	0.62	+0.6
1,796,523	+		LRK54_RS08210	0.62	+1.4
1,796,523	+		LRK54_RS08210	0.62	+0.5
1,796,523	+		LRK54_RS08210	0.62	-0.6
1,796,523	+		LRK54_RS08210	0.62	-0.9
1,796,523	+		LRK54_RS08210	0.62	-1.7
1,796,523	+		LRK54_RS08210	0.62	+0.5
1,796,523	+		LRK54_RS08210	0.62	-0.4
1,796,523	+		LRK54_RS08210	0.62	-0.9
1,796,523	+		LRK54_RS08210	0.62	-1.6
1,796,524	-		LRK54_RS08210	0.63	-1.6
1,796,524	-		LRK54_RS08210	0.63	-0.9
1,796,524	-		LRK54_RS08210	0.63	-0.9
1,796,524	-		LRK54_RS08210	0.63	+0.1
1,796,524	-		LRK54_RS08210	0.63	+0.0
1,796,524	-		LRK54_RS08210	0.63	-1.4
1,796,524	-		LRK54_RS08210	0.63	-0.5
1,796,524	-		LRK54_RS08210	0.63	+1.6
1,796,524	-		LRK54_RS08210	0.63	+0.3
1,796,524	-		LRK54_RS08210	0.63	-1.3
1,796,524	-		LRK54_RS08210	0.63	+0.7
1,796,524	-		LRK54_RS08210	0.63	-1.4
1,796,524	-		LRK54_RS08210	0.63	-1.5
1,796,524	-		LRK54_RS08210	0.63	-1.4
1,796,524	-		LRK54_RS08210	0.63	+0.6
1,796,524	-		LRK54_RS08210	0.63	-0.1
1,796,524	-		LRK54_RS08210	0.63	+0.7
1,796,524	-		LRK54_RS08210	0.63	-0.0
1,796,524	-		LRK54_RS08210	0.63	-2.5
1,796,524	-		LRK54_RS08210	0.63	+0.5
1,796,524	-		LRK54_RS08210	0.63	+0.0
1,796,524	-		LRK54_RS08210	0.63	+0.1
1,796,524	-		LRK54_RS08210	0.63	+0.9
1,796,524	-		LRK54_RS08210	0.63	+0.6
1,796,524	-		LRK54_RS08210	0.63	-0.9
1,796,524	-		LRK54_RS08210	0.63	-1.6
1,796,524	-		LRK54_RS08210	0.63	-0.6
1,796,524	-		LRK54_RS08210	0.63	-0.9
1,796,524	-		LRK54_RS08210	0.63	-1.0
1,796,524	-		LRK54_RS08210	0.63	-0.5
1,796,524	-		LRK54_RS08210	0.63	-0.5
1,796,524	-		LRK54_RS08210	0.63	-0.2
1,796,524	-		LRK54_RS08210	0.63	-0.5
1,796,524	-		LRK54_RS08210	0.63	-1.9
1,796,640	+		LRK54_RS08210	0.76	-1.0
1,796,640	+		LRK54_RS08210	0.76	-0.2
1,796,640	+		LRK54_RS08210	0.76	-0.5
1,796,640	+		LRK54_RS08210	0.76	-1.9
1,796,640	+		LRK54_RS08210	0.76	+3.3
1,796,640	+		LRK54_RS08210	0.76	-1.4
1,796,640	+		LRK54_RS08210	0.76	+0.2
1,796,640	+		LRK54_RS08210	0.76	-0.3
1,796,640	+		LRK54_RS08210	0.76	-0.7
1,796,641	-		LRK54_RS08210	0.76	+1.2
1,796,641	-		LRK54_RS08210	0.76	+0.4
1,796,641	-		LRK54_RS08210	0.76	-0.7
1,796,641	-		LRK54_RS08210	0.76	-1.8
1,796,641	-		LRK54_RS08210	0.76	-1.9
1,796,641	-		LRK54_RS08210	0.76	+3.3
1,796,641	-		LRK54_RS08210	0.76	+0.6
1,796,641	-		LRK54_RS08210	0.76	-1.7
1,796,641	-		LRK54_RS08210	0.76	-2.4
1,796,644	+		LRK54_RS08210	0.77	-1.3
1,796,644	+		LRK54_RS08210	0.77	-0.2
1,796,645	-		LRK54_RS08210	0.77	-1.5
1,796,645	-		LRK54_RS08210	0.77	-1.4
1,796,645	-		LRK54_RS08210	0.77	-0.6
1,796,848	+				-0.2
1,796,880	+				+1.0
1,796,880	+				-1.6
1,796,880	+				-0.7
1,796,880	+				-0.9
1,796,880	+				+1.5
1,796,881	-				-0.6
1,796,881	-				+0.5
1,796,881	-				+1.2
1,796,881	-				-2.6
1,796,905	+				+1.6
1,796,905	+				+1.8
1,796,906	-				-0.0
1,796,906	-				-1.2
1,796,906	-				-0.1
1,796,907	+				-0.4
1,796,907	+				-0.1
1,796,907	+				-2.0
1,796,907	+				-0.8
1,796,907	+				-0.5
1,796,907	+				-0.2
1,796,907	+				+1.8
1,796,907	+				-0.5
1,796,907	+				-0.2
1,796,908	-				-1.1
1,796,908	-				+1.6
1,796,908	-				-0.6
1,796,908	-				-2.3
1,796,908	-				-1.1
1,796,908	-				-1.4
1,796,908	-				+1.5
1,796,908	-				+1.4
1,796,908	-				+2.0
1,797,015	+		LRK54_RS08215	0.36	-1.5
1,797,015	+		LRK54_RS08215	0.36	-0.7
1,797,015	+		LRK54_RS08215	0.36	+0.3
1,797,015	+		LRK54_RS08215	0.36	+0.5
1,797,015	+		LRK54_RS08215	0.36	-0.5
1,797,015	+		LRK54_RS08215	0.36	-0.4
1,797,015	+		LRK54_RS08215	0.36	-0.2
1,797,015	+		LRK54_RS08215	0.36	-0.2
1,797,015	+		LRK54_RS08215	0.36	+1.3
1,797,015	+		LRK54_RS08215	0.36	-0.7
1,797,015	+		LRK54_RS08215	0.36	+0.3
1,797,015	+		LRK54_RS08215	0.36	+0.8
1,797,015	+		LRK54_RS08215	0.36	+0.3
1,797,015	+		LRK54_RS08215	0.36	+0.5
1,797,015	+		LRK54_RS08215	0.36	-0.4
1,797,015	+		LRK54_RS08215	0.36	+0.9
1,797,015	+		LRK54_RS08215	0.36	+2.3
1,797,015	+		LRK54_RS08215	0.36	-1.2
1,797,015	+		LRK54_RS08215	0.36	-1.4
1,797,015	+		LRK54_RS08215	0.36	+0.1
1,797,015	+		LRK54_RS08215	0.36	-0.5
1,797,015	+		LRK54_RS08215	0.36	+0.6
1,797,015	+		LRK54_RS08215	0.36	-0.3
1,797,016	-		LRK54_RS08215	0.36	-1.0
1,797,016	-		LRK54_RS08215	0.36	-2.3
1,797,016	-		LRK54_RS08215	0.36	+0.8
1,797,016	-		LRK54_RS08215	0.36	+0.5
1,797,016	-		LRK54_RS08215	0.36	-3.1
1,797,016	-		LRK54_RS08215	0.36	-0.8
1,797,016	-		LRK54_RS08215	0.36	+0.5
1,797,016	-		LRK54_RS08215	0.36	-2.8
1,797,016	-		LRK54_RS08215	0.36	-0.6
1,797,016	-		LRK54_RS08215	0.36	-1.9
1,797,156	+		LRK54_RS08215	0.73	-1.2
1,797,156	+		LRK54_RS08215	0.73	-2.4
1,797,157	-		LRK54_RS08215	0.73	+0.2
1,797,157	-		LRK54_RS08215	0.73	-1.9
1,797,275	+				+0.5
1,797,275	+				-0.0
1,797,275	+				+0.2
1,797,275	+				-0.5
1,797,275	+				-0.2
1,797,275	+				+2.4
1,797,275	+				-0.1
1,797,275	+				-0.6
1,797,275	+				-1.2
1,797,275	+				-0.5
1,797,276	-				+1.1
1,797,276	-				+0.3
1,797,276	-				-0.9
1,797,276	-				-0.4
1,797,276	-				+2.0
1,797,276	-				-0.9
1,797,276	-				-0.1
1,797,338	+		LRK54_RS08220	0.27	+0.0
1,797,338	+		LRK54_RS08220	0.27	-2.4
1,797,338	+		LRK54_RS08220	0.27	+1.7
1,797,339	-		LRK54_RS08220	0.27	+1.6
1,797,339	-		LRK54_RS08220	0.27	-0.1
1,797,339	-		LRK54_RS08220	0.27	+1.6
1,797,339	-		LRK54_RS08220	0.27	-0.7
1,797,431	+		LRK54_RS08220	0.58	+1.2
1,797,431	+		LRK54_RS08220	0.58	-0.1
1,797,432	-		LRK54_RS08220	0.58	-1.0
1,797,432	-		LRK54_RS08220	0.58	-0.4
1,797,437	+		LRK54_RS08220	0.60	+1.0
1,797,437	+		LRK54_RS08220	0.60	+0.1
1,797,437	+		LRK54_RS08220	0.60	-0.9
1,797,437	+		LRK54_RS08220	0.60	+0.2
1,797,437	+		LRK54_RS08220	0.60	-0.2
1,797,437	+		LRK54_RS08220	0.60	+1.9
1,797,437	+		LRK54_RS08220	0.60	-1.0
1,797,437	+		LRK54_RS08220	0.60	+0.5
1,797,437	+		LRK54_RS08220	0.60	+0.5
1,797,437	+		LRK54_RS08220	0.60	-0.1
1,797,437	+		LRK54_RS08220	0.60	+0.3
1,797,437	+		LRK54_RS08220	0.60	+1.8
1,797,437	+		LRK54_RS08220	0.60	-0.4
1,797,438	-		LRK54_RS08220	0.60	-0.1
1,797,438	-		LRK54_RS08220	0.60	-2.0
1,797,438	-		LRK54_RS08220	0.60	+3.3
1,797,438	-		LRK54_RS08220	0.60	-2.2
1,797,438	-		LRK54_RS08220	0.60	-0.4
1,797,438	-		LRK54_RS08220	0.60	-1.9
1,797,438	-		LRK54_RS08220	0.60	+0.9
1,797,438	-		LRK54_RS08220	0.60	-0.5
1,797,438	-		LRK54_RS08220	0.60	-2.8
1,797,438	-		LRK54_RS08220	0.60	+1.3
1,797,438	-		LRK54_RS08220	0.60	-0.9
1,797,438	-		LRK54_RS08220	0.60	-2.3
1,797,438	-		LRK54_RS08220	0.60	+0.6
1,797,438	-		LRK54_RS08220	0.60	+0.1
1,797,438	-		LRK54_RS08220	0.60	-0.7
1,797,438	-		LRK54_RS08220	0.60	+0.1
1,797,440	+		LRK54_RS08220	0.61	+0.2
1,797,440	+		LRK54_RS08220	0.61	-0.2
1,797,440	+		LRK54_RS08220	0.61	+0.4
1,797,440	+		LRK54_RS08220	0.61	-0.7
1,797,440	+		LRK54_RS08220	0.61	-0.1
1,797,440	+		LRK54_RS08220	0.61	-0.2
1,797,440	+		LRK54_RS08220	0.61	-0.9
1,797,440	+		LRK54_RS08220	0.61	-0.8
1,797,440	+		LRK54_RS08220	0.61	+0.6
1,797,440	+		LRK54_RS08220	0.61	-1.4
1,797,440	+		LRK54_RS08220	0.61	-2.6
1,797,440	+		LRK54_RS08220	0.61	-2.4
1,797,441	-		LRK54_RS08220	0.61	+0.5
1,797,441	-		LRK54_RS08220	0.61	+0.7
1,797,441	-		LRK54_RS08220	0.61	+0.7
1,797,441	-		LRK54_RS08220	0.61	+1.8
1,797,441	-		LRK54_RS08220	0.61	+1.8
1,797,441	-		LRK54_RS08220	0.61	+2.2
1,797,441	-		LRK54_RS08220	0.61	-0.7
1,797,441	-		LRK54_RS08220	0.61	-0.7
1,797,441	-		LRK54_RS08220	0.61	-0.2
1,797,441	-		LRK54_RS08220	0.61	-0.1
1,797,441	-		LRK54_RS08220	0.61	+0.6
1,797,441	-		LRK54_RS08220	0.61	+0.3
1,797,441	-		LRK54_RS08220	0.61	-0.9
1,797,441	-		LRK54_RS08220	0.61	+0.5
1,797,467	+		LRK54_RS08220	0.70	+1.5
1,797,467	+		LRK54_RS08220	0.70	+0.0
1,797,468	-		LRK54_RS08220	0.70	-1.0
1,797,468	-		LRK54_RS08220	0.70	+0.8
1,797,468	-		LRK54_RS08220	0.70	-0.7
1,797,468	-		LRK54_RS08220	0.70	+3.3
1,797,468	-		LRK54_RS08220	0.70	-0.2
1,797,468	-		LRK54_RS08220	0.70	-0.3
1,797,468	-		LRK54_RS08220	0.70	+0.4
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